Experiment: Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1692 and Pf6N2E2_1693 are separated by 16 nucleotides Pf6N2E2_1693 and Pf6N2E2_1694 are separated by 139 nucleotides Pf6N2E2_1694 and Pf6N2E2_1695 are separated by 59 nucleotides
Pf6N2E2_1692 - transporter, LysE family, at 2,001,577 to 2,002,218
_1692
Pf6N2E2_1693 - hypothetical protein, at 2,002,235 to 2,002,354
_1693
Pf6N2E2_1694 - FMN reductase (EC 1.5.1.29), at 2,002,494 to 2,003,057
_1694
Pf6N2E2_1695 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 2,003,117 to 2,004,304
_1695
Position (kb)
2002
2003
2004 Strain fitness (log2 ratio)
-1
0
1 at 2001.512 kb on + strand at 2001.603 kb on + strand at 2001.924 kb on - strand, within Pf6N2E2_1692 at 2001.924 kb on - strand, within Pf6N2E2_1692 at 2001.924 kb on - strand, within Pf6N2E2_1692 at 2001.925 kb on + strand, within Pf6N2E2_1692 at 2001.926 kb on - strand, within Pf6N2E2_1692 at 2002.084 kb on + strand, within Pf6N2E2_1692 at 2002.085 kb on - strand, within Pf6N2E2_1692 at 2002.460 kb on + strand at 2002.460 kb on + strand at 2002.460 kb on + strand at 2002.461 kb on - strand at 2002.461 kb on - strand at 2002.490 kb on + strand at 2002.490 kb on + strand at 2002.490 kb on + strand at 2002.491 kb on - strand at 2002.491 kb on - strand at 2002.491 kb on - strand at 2002.491 kb on - strand at 2002.491 kb on - strand at 2002.756 kb on - strand, within Pf6N2E2_1694 at 2003.687 kb on - strand, within Pf6N2E2_1695 at 2003.687 kb on - strand, within Pf6N2E2_1695 at 2003.740 kb on - strand, within Pf6N2E2_1695 at 2003.755 kb on - strand, within Pf6N2E2_1695 at 2003.876 kb on + strand, within Pf6N2E2_1695 at 2003.939 kb on + strand, within Pf6N2E2_1695 at 2003.939 kb on + strand, within Pf6N2E2_1695 at 2003.940 kb on - strand, within Pf6N2E2_1695 at 2003.940 kb on - strand, within Pf6N2E2_1695 at 2003.940 kb on - strand, within Pf6N2E2_1695
Per-strain Table
Position Strand Gene LocusTag Fraction Urea (N) remove 2,001,512 + +0.8 2,001,603 + +1.5 2,001,924 - Pf6N2E2_1692 0.54 +0.5 2,001,924 - Pf6N2E2_1692 0.54 -1.5 2,001,924 - Pf6N2E2_1692 0.54 -0.9 2,001,925 + Pf6N2E2_1692 0.54 +0.5 2,001,926 - Pf6N2E2_1692 0.54 -1.2 2,002,084 + Pf6N2E2_1692 0.79 +0.2 2,002,085 - Pf6N2E2_1692 0.79 -0.5 2,002,460 + +0.8 2,002,460 + +0.1 2,002,460 + +0.2 2,002,461 - -0.2 2,002,461 - -0.0 2,002,490 + -0.1 2,002,490 + -0.1 2,002,490 + -0.2 2,002,491 - -0.1 2,002,491 - +0.2 2,002,491 - -0.2 2,002,491 - -0.6 2,002,491 - -0.6 2,002,756 - Pf6N2E2_1694 0.46 -0.9 2,003,687 - Pf6N2E2_1695 0.48 -0.6 2,003,687 - Pf6N2E2_1695 0.48 +0.4 2,003,740 - Pf6N2E2_1695 0.52 +0.3 2,003,755 - Pf6N2E2_1695 0.54 +0.2 2,003,876 + Pf6N2E2_1695 0.64 +1.3 2,003,939 + Pf6N2E2_1695 0.69 +0.2 2,003,939 + Pf6N2E2_1695 0.69 -0.3 2,003,940 - Pf6N2E2_1695 0.69 +0.7 2,003,940 - Pf6N2E2_1695 0.69 -0.5 2,003,940 - Pf6N2E2_1695 0.69 +0.7
Or see this region's nucleotide sequence