Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_724 and Pf6N2E2_725 are separated by 229 nucleotides Pf6N2E2_725 and Pf6N2E2_726 overlap by 4 nucleotides
Pf6N2E2_724 - Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family), at 827,836 to 828,513
_724
Pf6N2E2_725 - Nitrate/nitrite response regulator protein, at 828,743 to 829,390
_725
Pf6N2E2_726 - Nitrate/nitrite sensor protein (EC 2.7.3.-), at 829,387 to 831,186
_726
Position (kb) 828
829
830 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 828.193 kb on + strand, within Pf6N2E2_724 at 828.248 kb on - strand, within Pf6N2E2_724 at 828.488 kb on - strand at 828.539 kb on + strand at 828.540 kb on - strand at 828.563 kb on - strand at 828.563 kb on - strand at 828.711 kb on + strand at 828.712 kb on - strand at 828.712 kb on - strand at 828.712 kb on - strand at 828.712 kb on - strand at 828.712 kb on - strand at 828.731 kb on + strand at 828.732 kb on - strand at 828.732 kb on - strand at 829.035 kb on + strand, within Pf6N2E2_725 at 829.035 kb on + strand, within Pf6N2E2_725 at 829.036 kb on - strand, within Pf6N2E2_725 at 829.155 kb on + strand, within Pf6N2E2_725 at 829.156 kb on - strand, within Pf6N2E2_725 at 829.156 kb on - strand, within Pf6N2E2_725 at 829.156 kb on - strand, within Pf6N2E2_725 at 829.156 kb on - strand, within Pf6N2E2_725 at 829.361 kb on + strand at 829.362 kb on - strand at 829.856 kb on + strand, within Pf6N2E2_726 at 829.965 kb on - strand, within Pf6N2E2_726 at 830.076 kb on + strand, within Pf6N2E2_726 at 830.076 kb on + strand, within Pf6N2E2_726 at 830.220 kb on + strand, within Pf6N2E2_726
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 828,193 + Pf6N2E2_724 0.53 +0.1 828,248 - Pf6N2E2_724 0.61 +0.7 828,488 - -1.1 828,539 + +0.3 828,540 - -1.1 828,563 - -0.4 828,563 - +0.7 828,711 + -3.3 828,712 - -1.2 828,712 - +0.6 828,712 - +0.2 828,712 - +0.5 828,712 - +0.0 828,731 + +0.0 828,732 - -0.0 828,732 - +0.7 829,035 + Pf6N2E2_725 0.45 +0.7 829,035 + Pf6N2E2_725 0.45 +0.6 829,036 - Pf6N2E2_725 0.45 -0.4 829,155 + Pf6N2E2_725 0.64 +1.3 829,156 - Pf6N2E2_725 0.64 +0.6 829,156 - Pf6N2E2_725 0.64 +1.2 829,156 - Pf6N2E2_725 0.64 +0.3 829,156 - Pf6N2E2_725 0.64 +0.4 829,361 + -0.1 829,362 - +1.7 829,856 + Pf6N2E2_726 0.26 -0.0 829,965 - Pf6N2E2_726 0.32 -1.8 830,076 + Pf6N2E2_726 0.38 +0.1 830,076 + Pf6N2E2_726 0.38 +1.0 830,220 + Pf6N2E2_726 0.46 -0.1
Or see this region's nucleotide sequence