Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_98

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_96 and Pf6N2E2_97 are separated by 93 nucleotidesPf6N2E2_97 and Pf6N2E2_98 overlap by 4 nucleotidesPf6N2E2_98 and Pf6N2E2_99 are separated by 53 nucleotidesPf6N2E2_99 and Pf6N2E2_100 are separated by 298 nucleotides Pf6N2E2_96 - FIG011065: hypothetical protein, at 141,787 to 142,551 _96 Pf6N2E2_97 - putataive branched-chain amino acid transport protein AzlC, at 142,645 to 143,355 _97 Pf6N2E2_98 - putative transmembrane protein, at 143,352 to 143,660 _98 Pf6N2E2_99 - hypothetical protein, at 143,714 to 143,854 _99 Pf6N2E2_100 - membrane protein, putative, at 144,153 to 145,364 _100 Position (kb) 143 144Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 142.390 kb on + strand, within Pf6N2E2_96at 142.390 kb on + strand, within Pf6N2E2_96at 142.390 kb on + strand, within Pf6N2E2_96at 142.391 kb on - strand, within Pf6N2E2_96at 142.528 kb on + strandat 142.528 kb on + strandat 142.528 kb on + strandat 142.528 kb on + strandat 142.529 kb on - strandat 142.560 kb on + strandat 142.602 kb on - strandat 142.602 kb on - strandat 142.602 kb on - strandat 142.621 kb on + strandat 142.621 kb on + strandat 142.621 kb on + strandat 142.621 kb on + strandat 142.622 kb on - strandat 142.622 kb on - strandat 142.622 kb on - strandat 142.622 kb on - strandat 142.622 kb on - strandat 142.622 kb on - strandat 142.622 kb on - strandat 142.693 kb on + strandat 142.693 kb on + strandat 142.693 kb on + strandat 142.693 kb on + strandat 142.693 kb on + strandat 142.693 kb on + strandat 142.694 kb on - strandat 142.694 kb on - strandat 142.694 kb on - strandat 142.694 kb on - strandat 142.788 kb on + strand, within Pf6N2E2_97at 142.788 kb on + strand, within Pf6N2E2_97at 142.788 kb on + strand, within Pf6N2E2_97at 142.788 kb on + strand, within Pf6N2E2_97at 142.789 kb on - strand, within Pf6N2E2_97at 142.800 kb on - strand, within Pf6N2E2_97at 143.230 kb on - strand, within Pf6N2E2_97at 143.392 kb on + strand, within Pf6N2E2_98at 143.393 kb on - strand, within Pf6N2E2_98at 143.629 kb on + strand, within Pf6N2E2_98at 143.630 kb on - strandat 143.757 kb on - strand, within Pf6N2E2_99at 143.757 kb on - strand, within Pf6N2E2_99at 143.757 kb on - strand, within Pf6N2E2_99at 143.768 kb on - strand, within Pf6N2E2_99at 143.870 kb on + strandat 143.923 kb on + strandat 143.923 kb on + strandat 143.923 kb on + strandat 143.923 kb on + strandat 143.923 kb on + strandat 143.923 kb on + strandat 143.924 kb on - strandat 143.924 kb on - strandat 143.954 kb on - strandat 143.954 kb on - strandat 143.976 kb on - strandat 144.117 kb on + strandat 144.117 kb on + strandat 144.118 kb on - strandat 144.118 kb on - strandat 144.118 kb on - strandat 144.118 kb on - strandat 144.128 kb on + strandat 144.129 kb on - strandat 144.129 kb on - strandat 144.129 kb on - strandat 144.129 kb on - strandat 144.132 kb on - strandat 144.132 kb on - strandat 144.132 kb on - strandat 144.132 kb on - strandat 144.132 kb on - strandat 144.172 kb on + strandat 144.172 kb on + strandat 144.172 kb on + strandat 144.173 kb on - strandat 144.173 kb on - strandat 144.196 kb on + strandat 144.196 kb on + strandat 144.196 kb on + strandat 144.197 kb on - strandat 144.197 kb on - strandat 144.197 kb on - strandat 144.276 kb on - strand, within Pf6N2E2_100at 144.300 kb on + strand, within Pf6N2E2_100at 144.403 kb on + strand, within Pf6N2E2_100at 144.404 kb on - strand, within Pf6N2E2_100at 144.511 kb on + strand, within Pf6N2E2_100at 144.511 kb on + strand, within Pf6N2E2_100at 144.512 kb on - strand, within Pf6N2E2_100at 144.512 kb on - strand, within Pf6N2E2_100at 144.600 kb on + strand, within Pf6N2E2_100at 144.610 kb on + strand, within Pf6N2E2_100at 144.610 kb on + strand, within Pf6N2E2_100at 144.610 kb on + strand, within Pf6N2E2_100at 144.631 kb on + strand, within Pf6N2E2_100

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
142,390 + Pf6N2E2_96 0.79 +0.1
142,390 + Pf6N2E2_96 0.79 -1.1
142,390 + Pf6N2E2_96 0.79 +0.7
142,391 - Pf6N2E2_96 0.79 -0.2
142,528 + +0.6
142,528 + -0.4
142,528 + -0.1
142,528 + +0.5
142,529 - +0.1
142,560 + +0.1
142,602 - +2.7
142,602 - +0.7
142,602 - -3.6
142,621 + -0.0
142,621 + -0.8
142,621 + +0.7
142,621 + -1.3
142,622 - +2.1
142,622 - -2.5
142,622 - +1.9
142,622 - +0.3
142,622 - -0.3
142,622 - +2.0
142,622 - +1.2
142,693 + +1.5
142,693 + -0.4
142,693 + -1.2
142,693 + +0.3
142,693 + -2.5
142,693 + +1.5
142,694 - -1.9
142,694 - -2.1
142,694 - -2.7
142,694 - +1.3
142,788 + Pf6N2E2_97 0.20 -1.8
142,788 + Pf6N2E2_97 0.20 -0.1
142,788 + Pf6N2E2_97 0.20 -1.0
142,788 + Pf6N2E2_97 0.20 +0.5
142,789 - Pf6N2E2_97 0.20 +0.8
142,800 - Pf6N2E2_97 0.22 -2.5
143,230 - Pf6N2E2_97 0.82 +1.1
143,392 + Pf6N2E2_98 0.13 -1.1
143,393 - Pf6N2E2_98 0.13 -0.2
143,629 + Pf6N2E2_98 0.90 -1.3
143,630 - -0.3
143,757 - Pf6N2E2_99 0.30 -0.1
143,757 - Pf6N2E2_99 0.30 -0.5
143,757 - Pf6N2E2_99 0.30 +0.1
143,768 - Pf6N2E2_99 0.38 +0.3
143,870 + -0.9
143,923 + +1.3
143,923 + -1.1
143,923 + -2.9
143,923 + +0.3
143,923 + -2.8
143,923 + -1.5
143,924 - -3.1
143,924 - -3.2
143,954 - -1.8
143,954 - +0.6
143,976 - +0.2
144,117 + -0.1
144,117 + +0.8
144,118 - -1.3
144,118 - +1.8
144,118 - +1.1
144,118 - +1.1
144,128 + +0.7
144,129 - -0.7
144,129 - +1.9
144,129 - -0.6
144,129 - -1.6
144,132 - +1.1
144,132 - -1.3
144,132 - -2.3
144,132 - -0.9
144,132 - +0.4
144,172 + +0.3
144,172 + +1.4
144,172 + +0.6
144,173 - -0.7
144,173 - +0.5
144,196 + -0.8
144,196 + -3.1
144,196 + -0.9
144,197 - +0.4
144,197 - -0.1
144,197 - -1.4
144,276 - Pf6N2E2_100 0.10 -1.5
144,300 + Pf6N2E2_100 0.12 +1.0
144,403 + Pf6N2E2_100 0.21 +0.9
144,404 - Pf6N2E2_100 0.21 -2.8
144,511 + Pf6N2E2_100 0.30 +0.8
144,511 + Pf6N2E2_100 0.30 +0.6
144,512 - Pf6N2E2_100 0.30 -1.6
144,512 - Pf6N2E2_100 0.30 +0.5
144,600 + Pf6N2E2_100 0.37 +0.0
144,610 + Pf6N2E2_100 0.38 -0.4
144,610 + Pf6N2E2_100 0.38 -1.5
144,610 + Pf6N2E2_100 0.38 +0.8
144,631 + Pf6N2E2_100 0.39 -1.9

Or see this region's nucleotide sequence