Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_932 and Pf6N2E2_933 are separated by 440 nucleotides Pf6N2E2_933 and Pf6N2E2_934 are separated by 942 nucleotides
Pf6N2E2_932 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 1,097,854 to 1,099,071
_932
Pf6N2E2_933 - Glutathione S-transferase (EC 2.5.1.18), at 1,099,512 to 1,100,132
_933
Pf6N2E2_934 - Arabinose 5-phosphate isomerase (EC 5.3.1.13), at 1,101,075 to 1,101,671
_934
Position (kb)
1099
1100
1101 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1098.516 kb on - strand, within Pf6N2E2_932 at 1098.516 kb on - strand, within Pf6N2E2_932 at 1098.516 kb on - strand, within Pf6N2E2_932 at 1098.560 kb on - strand, within Pf6N2E2_932 at 1098.560 kb on - strand, within Pf6N2E2_932 at 1098.608 kb on + strand at 1098.609 kb on - strand, within Pf6N2E2_932 at 1098.665 kb on - strand, within Pf6N2E2_932 at 1098.746 kb on + strand, within Pf6N2E2_932 at 1098.747 kb on - strand, within Pf6N2E2_932 at 1098.747 kb on - strand, within Pf6N2E2_932 at 1098.989 kb on + strand at 1098.993 kb on + strand at 1099.109 kb on + strand at 1099.110 kb on - strand at 1099.169 kb on + strand at 1099.259 kb on - strand at 1099.260 kb on + strand at 1099.261 kb on - strand at 1099.261 kb on - strand at 1099.261 kb on - strand at 1099.261 kb on - strand at 1099.277 kb on + strand at 1099.396 kb on + strand at 1099.397 kb on - strand at 1099.534 kb on - strand at 1099.534 kb on - strand at 1099.545 kb on + strand at 1099.556 kb on + strand at 1099.557 kb on - strand at 1099.620 kb on + strand, within Pf6N2E2_933 at 1099.620 kb on + strand, within Pf6N2E2_933 at 1099.621 kb on - strand, within Pf6N2E2_933 at 1099.621 kb on - strand, within Pf6N2E2_933 at 1099.650 kb on - strand, within Pf6N2E2_933 at 1099.825 kb on + strand, within Pf6N2E2_933 at 1099.889 kb on + strand, within Pf6N2E2_933 at 1099.889 kb on + strand, within Pf6N2E2_933 at 1100.118 kb on + strand at 1100.119 kb on - strand at 1100.119 kb on - strand at 1100.119 kb on - strand at 1100.119 kb on - strand at 1100.119 kb on - strand at 1100.288 kb on + strand at 1100.289 kb on - strand at 1100.289 kb on - strand at 1100.427 kb on - strand at 1100.469 kb on - strand at 1100.648 kb on - strand at 1100.704 kb on + strand at 1100.830 kb on + strand at 1100.830 kb on + strand at 1100.830 kb on + strand at 1100.830 kb on + strand at 1100.831 kb on - strand at 1100.831 kb on - strand at 1100.831 kb on - strand at 1100.831 kb on - strand at 1100.831 kb on - strand at 1100.831 kb on - strand at 1100.831 kb on - strand at 1100.831 kb on - strand at 1100.880 kb on + strand at 1101.044 kb on - strand at 1101.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 1,098,516 - Pf6N2E2_932 0.54 +0.9 1,098,516 - Pf6N2E2_932 0.54 -1.1 1,098,516 - Pf6N2E2_932 0.54 +1.2 1,098,560 - Pf6N2E2_932 0.58 +1.9 1,098,560 - Pf6N2E2_932 0.58 -0.9 1,098,608 + +0.3 1,098,609 - Pf6N2E2_932 0.62 +0.5 1,098,665 - Pf6N2E2_932 0.67 -3.3 1,098,746 + Pf6N2E2_932 0.73 -0.4 1,098,747 - Pf6N2E2_932 0.73 +1.0 1,098,747 - Pf6N2E2_932 0.73 +0.8 1,098,989 + -0.7 1,098,993 + +0.9 1,099,109 + +2.3 1,099,110 - +0.6 1,099,169 + +1.2 1,099,259 - -2.0 1,099,260 + +0.8 1,099,261 - -0.1 1,099,261 - +0.5 1,099,261 - -0.3 1,099,261 - +1.4 1,099,277 + +0.2 1,099,396 + -2.5 1,099,397 - +1.2 1,099,534 - -1.3 1,099,534 - +1.3 1,099,545 + -0.3 1,099,556 + -3.1 1,099,557 - -0.4 1,099,620 + Pf6N2E2_933 0.17 -1.6 1,099,620 + Pf6N2E2_933 0.17 +1.2 1,099,621 - Pf6N2E2_933 0.18 -2.3 1,099,621 - Pf6N2E2_933 0.18 -1.5 1,099,650 - Pf6N2E2_933 0.22 -1.5 1,099,825 + Pf6N2E2_933 0.50 -0.7 1,099,889 + Pf6N2E2_933 0.61 +0.2 1,099,889 + Pf6N2E2_933 0.61 -0.9 1,100,118 + -0.8 1,100,119 - +0.7 1,100,119 - +1.0 1,100,119 - +0.5 1,100,119 - +0.7 1,100,119 - -1.1 1,100,288 + +3.0 1,100,289 - +0.9 1,100,289 - +1.7 1,100,427 - +0.5 1,100,469 - -2.7 1,100,648 - -1.6 1,100,704 + +1.6 1,100,830 + -1.3 1,100,830 + +1.6 1,100,830 + +1.3 1,100,830 + -2.0 1,100,831 - +2.2 1,100,831 - +0.3 1,100,831 - +0.6 1,100,831 - +0.7 1,100,831 - +0.1 1,100,831 - -0.4 1,100,831 - +2.1 1,100,831 - +0.2 1,100,880 + -2.7 1,101,044 - +1.0 1,101,106 - -0.8
Or see this region's nucleotide sequence