Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_933

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_932 and Pf6N2E2_933 are separated by 440 nucleotidesPf6N2E2_933 and Pf6N2E2_934 are separated by 942 nucleotides Pf6N2E2_932 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 1,097,854 to 1,099,071 _932 Pf6N2E2_933 - Glutathione S-transferase (EC 2.5.1.18), at 1,099,512 to 1,100,132 _933 Pf6N2E2_934 - Arabinose 5-phosphate isomerase (EC 5.3.1.13), at 1,101,075 to 1,101,671 _934 Position (kb) 1099 1100 1101Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1098.516 kb on - strand, within Pf6N2E2_932at 1098.516 kb on - strand, within Pf6N2E2_932at 1098.516 kb on - strand, within Pf6N2E2_932at 1098.560 kb on - strand, within Pf6N2E2_932at 1098.560 kb on - strand, within Pf6N2E2_932at 1098.608 kb on + strandat 1098.609 kb on - strand, within Pf6N2E2_932at 1098.665 kb on - strand, within Pf6N2E2_932at 1098.746 kb on + strand, within Pf6N2E2_932at 1098.747 kb on - strand, within Pf6N2E2_932at 1098.747 kb on - strand, within Pf6N2E2_932at 1098.989 kb on + strandat 1098.993 kb on + strandat 1099.109 kb on + strandat 1099.110 kb on - strandat 1099.169 kb on + strandat 1099.259 kb on - strandat 1099.260 kb on + strandat 1099.261 kb on - strandat 1099.261 kb on - strandat 1099.261 kb on - strandat 1099.261 kb on - strandat 1099.277 kb on + strandat 1099.396 kb on + strandat 1099.397 kb on - strandat 1099.534 kb on - strandat 1099.534 kb on - strandat 1099.545 kb on + strandat 1099.556 kb on + strandat 1099.557 kb on - strandat 1099.620 kb on + strand, within Pf6N2E2_933at 1099.620 kb on + strand, within Pf6N2E2_933at 1099.621 kb on - strand, within Pf6N2E2_933at 1099.621 kb on - strand, within Pf6N2E2_933at 1099.650 kb on - strand, within Pf6N2E2_933at 1099.825 kb on + strand, within Pf6N2E2_933at 1099.889 kb on + strand, within Pf6N2E2_933at 1099.889 kb on + strand, within Pf6N2E2_933at 1100.118 kb on + strandat 1100.119 kb on - strandat 1100.119 kb on - strandat 1100.119 kb on - strandat 1100.119 kb on - strandat 1100.119 kb on - strandat 1100.288 kb on + strandat 1100.289 kb on - strandat 1100.289 kb on - strandat 1100.427 kb on - strandat 1100.469 kb on - strandat 1100.648 kb on - strandat 1100.704 kb on + strandat 1100.830 kb on + strandat 1100.830 kb on + strandat 1100.830 kb on + strandat 1100.830 kb on + strandat 1100.831 kb on - strandat 1100.831 kb on - strandat 1100.831 kb on - strandat 1100.831 kb on - strandat 1100.831 kb on - strandat 1100.831 kb on - strandat 1100.831 kb on - strandat 1100.831 kb on - strandat 1100.880 kb on + strandat 1101.044 kb on - strandat 1101.106 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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1,098,516 - Pf6N2E2_932 0.54 +0.9
1,098,516 - Pf6N2E2_932 0.54 -1.1
1,098,516 - Pf6N2E2_932 0.54 +1.2
1,098,560 - Pf6N2E2_932 0.58 +1.9
1,098,560 - Pf6N2E2_932 0.58 -0.9
1,098,608 + +0.3
1,098,609 - Pf6N2E2_932 0.62 +0.5
1,098,665 - Pf6N2E2_932 0.67 -3.3
1,098,746 + Pf6N2E2_932 0.73 -0.4
1,098,747 - Pf6N2E2_932 0.73 +1.0
1,098,747 - Pf6N2E2_932 0.73 +0.8
1,098,989 + -0.7
1,098,993 + +0.9
1,099,109 + +2.3
1,099,110 - +0.6
1,099,169 + +1.2
1,099,259 - -2.0
1,099,260 + +0.8
1,099,261 - -0.1
1,099,261 - +0.5
1,099,261 - -0.3
1,099,261 - +1.4
1,099,277 + +0.2
1,099,396 + -2.5
1,099,397 - +1.2
1,099,534 - -1.3
1,099,534 - +1.3
1,099,545 + -0.3
1,099,556 + -3.1
1,099,557 - -0.4
1,099,620 + Pf6N2E2_933 0.17 -1.6
1,099,620 + Pf6N2E2_933 0.17 +1.2
1,099,621 - Pf6N2E2_933 0.18 -2.3
1,099,621 - Pf6N2E2_933 0.18 -1.5
1,099,650 - Pf6N2E2_933 0.22 -1.5
1,099,825 + Pf6N2E2_933 0.50 -0.7
1,099,889 + Pf6N2E2_933 0.61 +0.2
1,099,889 + Pf6N2E2_933 0.61 -0.9
1,100,118 + -0.8
1,100,119 - +0.7
1,100,119 - +1.0
1,100,119 - +0.5
1,100,119 - +0.7
1,100,119 - -1.1
1,100,288 + +3.0
1,100,289 - +0.9
1,100,289 - +1.7
1,100,427 - +0.5
1,100,469 - -2.7
1,100,648 - -1.6
1,100,704 + +1.6
1,100,830 + -1.3
1,100,830 + +1.6
1,100,830 + +1.3
1,100,830 + -2.0
1,100,831 - +2.2
1,100,831 - +0.3
1,100,831 - +0.6
1,100,831 - +0.7
1,100,831 - +0.1
1,100,831 - -0.4
1,100,831 - +2.1
1,100,831 - +0.2
1,100,880 + -2.7
1,101,044 - +1.0
1,101,106 - -0.8

Or see this region's nucleotide sequence