Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_801

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_798 and Pf6N2E2_799 overlap by 48 nucleotidesPf6N2E2_799 and Pf6N2E2_800 are separated by 49 nucleotidesPf6N2E2_800 and Pf6N2E2_801 are separated by 47 nucleotidesPf6N2E2_801 and Pf6N2E2_802 are separated by 342 nucleotides Pf6N2E2_798 - Ku domain protein, at 930,292 to 931,182 _798 Pf6N2E2_799 - hypothetical protein, at 931,135 to 931,344 _799 Pf6N2E2_800 - FIG00962948: hypothetical protein, at 931,394 to 931,723 _800 Pf6N2E2_801 - Soluble aldose sugar dehydrogenase, PQQ-dependent (EC 1.1.5.-), at 931,771 to 932,919 _801 Pf6N2E2_802 - Threonine dehydratase biosynthetic (EC 4.3.1.19), at 933,262 to 934,269 _802 Position (kb) 931 932 933Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 930.815 kb on + strand, within Pf6N2E2_798at 930.816 kb on - strand, within Pf6N2E2_798at 930.816 kb on - strand, within Pf6N2E2_798at 930.816 kb on - strand, within Pf6N2E2_798at 930.816 kb on - strand, within Pf6N2E2_798at 930.968 kb on + strand, within Pf6N2E2_798at 930.968 kb on + strand, within Pf6N2E2_798at 931.295 kb on + strand, within Pf6N2E2_799at 931.295 kb on + strand, within Pf6N2E2_799at 931.320 kb on + strand, within Pf6N2E2_799at 931.414 kb on - strandat 931.414 kb on - strandat 931.414 kb on - strandat 931.416 kb on + strandat 931.416 kb on + strandat 931.416 kb on + strandat 931.417 kb on - strandat 931.417 kb on - strandat 931.499 kb on + strand, within Pf6N2E2_800at 931.499 kb on + strand, within Pf6N2E2_800at 931.499 kb on + strand, within Pf6N2E2_800at 931.500 kb on - strand, within Pf6N2E2_800at 931.500 kb on - strand, within Pf6N2E2_800at 931.501 kb on + strand, within Pf6N2E2_800at 931.502 kb on - strand, within Pf6N2E2_800at 931.502 kb on - strand, within Pf6N2E2_800at 931.566 kb on + strand, within Pf6N2E2_800at 931.566 kb on + strand, within Pf6N2E2_800at 931.566 kb on + strand, within Pf6N2E2_800at 931.566 kb on + strand, within Pf6N2E2_800at 931.566 kb on + strand, within Pf6N2E2_800at 931.567 kb on - strand, within Pf6N2E2_800at 931.567 kb on - strand, within Pf6N2E2_800at 931.570 kb on + strand, within Pf6N2E2_800at 931.570 kb on + strand, within Pf6N2E2_800at 931.570 kb on + strand, within Pf6N2E2_800at 931.570 kb on + strand, within Pf6N2E2_800at 931.570 kb on + strand, within Pf6N2E2_800at 931.570 kb on + strand, within Pf6N2E2_800at 931.570 kb on + strand, within Pf6N2E2_800at 931.571 kb on - strand, within Pf6N2E2_800at 931.571 kb on - strand, within Pf6N2E2_800at 931.571 kb on - strand, within Pf6N2E2_800at 931.571 kb on - strand, within Pf6N2E2_800at 931.571 kb on - strand, within Pf6N2E2_800at 931.571 kb on - strand, within Pf6N2E2_800at 931.571 kb on - strand, within Pf6N2E2_800at 931.779 kb on + strandat 931.779 kb on + strandat 931.780 kb on - strandat 931.780 kb on - strandat 931.780 kb on - strandat 932.107 kb on + strand, within Pf6N2E2_801at 932.108 kb on - strand, within Pf6N2E2_801at 932.108 kb on - strand, within Pf6N2E2_801at 932.108 kb on - strand, within Pf6N2E2_801at 932.117 kb on - strand, within Pf6N2E2_801at 932.117 kb on - strand, within Pf6N2E2_801at 932.281 kb on + strand, within Pf6N2E2_801at 932.282 kb on - strand, within Pf6N2E2_801at 932.292 kb on + strand, within Pf6N2E2_801at 932.292 kb on + strand, within Pf6N2E2_801at 932.293 kb on - strand, within Pf6N2E2_801at 932.293 kb on - strand, within Pf6N2E2_801at 932.293 kb on - strand, within Pf6N2E2_801at 932.365 kb on + strand, within Pf6N2E2_801at 932.429 kb on + strand, within Pf6N2E2_801at 932.429 kb on + strand, within Pf6N2E2_801at 932.429 kb on + strand, within Pf6N2E2_801at 932.429 kb on + strand, within Pf6N2E2_801at 932.429 kb on + strand, within Pf6N2E2_801at 932.429 kb on + strand, within Pf6N2E2_801at 932.430 kb on - strand, within Pf6N2E2_801at 932.430 kb on - strand, within Pf6N2E2_801at 932.430 kb on - strand, within Pf6N2E2_801at 932.430 kb on - strand, within Pf6N2E2_801at 932.554 kb on + strand, within Pf6N2E2_801at 932.554 kb on + strand, within Pf6N2E2_801at 932.554 kb on + strand, within Pf6N2E2_801at 932.555 kb on - strand, within Pf6N2E2_801at 932.587 kb on + strand, within Pf6N2E2_801at 932.587 kb on + strand, within Pf6N2E2_801at 932.588 kb on - strand, within Pf6N2E2_801at 932.692 kb on + strand, within Pf6N2E2_801at 932.692 kb on + strand, within Pf6N2E2_801at 932.692 kb on + strand, within Pf6N2E2_801at 932.860 kb on + strandat 932.860 kb on + strandat 932.861 kb on - strandat 932.866 kb on + strandat 932.866 kb on + strandat 932.866 kb on + strandat 932.866 kb on + strandat 932.866 kb on + strandat 932.866 kb on + strandat 932.867 kb on - strandat 932.867 kb on - strandat 932.867 kb on - strandat 932.867 kb on - strandat 932.867 kb on - strandat 932.867 kb on - strandat 932.867 kb on - strandat 932.867 kb on - strandat 932.867 kb on - strandat 932.867 kb on - strandat 932.899 kb on + strandat 932.899 kb on + strandat 932.899 kb on + strandat 932.917 kb on + strandat 932.958 kb on + strandat 932.978 kb on + strandat 932.978 kb on + strandat 933.072 kb on + strandat 933.073 kb on - strandat 933.152 kb on - strandat 933.152 kb on - strandat 933.152 kb on - strandat 933.152 kb on - strandat 933.167 kb on + strandat 933.167 kb on + strandat 933.168 kb on - strandat 933.168 kb on - strandat 933.180 kb on - strandat 933.301 kb on + strandat 933.301 kb on + strandat 933.301 kb on + strandat 933.301 kb on + strandat 933.302 kb on - strandat 933.302 kb on - strandat 933.302 kb on - strandat 933.302 kb on - strandat 933.302 kb on - strandat 933.302 kb on - strandat 933.306 kb on + strandat 933.306 kb on + strandat 933.306 kb on + strandat 933.307 kb on - strandat 933.331 kb on + strandat 933.331 kb on + strandat 933.332 kb on - strandat 933.332 kb on - strandat 933.454 kb on + strand, within Pf6N2E2_802at 933.455 kb on - strand, within Pf6N2E2_802at 933.455 kb on - strand, within Pf6N2E2_802at 933.455 kb on - strand, within Pf6N2E2_802at 933.561 kb on + strand, within Pf6N2E2_802at 933.562 kb on - strand, within Pf6N2E2_802at 933.853 kb on + strand, within Pf6N2E2_802at 933.854 kb on - strand, within Pf6N2E2_802at 933.854 kb on - strand, within Pf6N2E2_802at 933.862 kb on + strand, within Pf6N2E2_802at 933.863 kb on - strand, within Pf6N2E2_802at 933.878 kb on + strand, within Pf6N2E2_802at 933.879 kb on - strand, within Pf6N2E2_802at 933.879 kb on - strand, within Pf6N2E2_802at 933.879 kb on - strand, within Pf6N2E2_802

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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930,815 + Pf6N2E2_798 0.59 -1.1
930,816 - Pf6N2E2_798 0.59 +0.3
930,816 - Pf6N2E2_798 0.59 +1.7
930,816 - Pf6N2E2_798 0.59 -0.3
930,816 - Pf6N2E2_798 0.59 +0.7
930,968 + Pf6N2E2_798 0.76 -1.1
930,968 + Pf6N2E2_798 0.76 -1.3
931,295 + Pf6N2E2_799 0.76 -0.2
931,295 + Pf6N2E2_799 0.76 +1.5
931,320 + Pf6N2E2_799 0.88 -3.1
931,414 - -0.2
931,414 - +2.4
931,414 - +0.7
931,416 + +1.0
931,416 + +0.0
931,416 + -0.6
931,417 - -0.5
931,417 - -0.0
931,499 + Pf6N2E2_800 0.32 -0.6
931,499 + Pf6N2E2_800 0.32 +0.3
931,499 + Pf6N2E2_800 0.32 +0.3
931,500 - Pf6N2E2_800 0.32 +0.3
931,500 - Pf6N2E2_800 0.32 -0.2
931,501 + Pf6N2E2_800 0.32 -0.1
931,502 - Pf6N2E2_800 0.33 -1.4
931,502 - Pf6N2E2_800 0.33 -1.0
931,566 + Pf6N2E2_800 0.52 +0.8
931,566 + Pf6N2E2_800 0.52 -0.7
931,566 + Pf6N2E2_800 0.52 -0.5
931,566 + Pf6N2E2_800 0.52 -1.7
931,566 + Pf6N2E2_800 0.52 -0.3
931,567 - Pf6N2E2_800 0.52 +1.4
931,567 - Pf6N2E2_800 0.52 -0.8
931,570 + Pf6N2E2_800 0.53 +1.5
931,570 + Pf6N2E2_800 0.53 +0.2
931,570 + Pf6N2E2_800 0.53 +0.7
931,570 + Pf6N2E2_800 0.53 +1.0
931,570 + Pf6N2E2_800 0.53 -0.4
931,570 + Pf6N2E2_800 0.53 -4.0
931,570 + Pf6N2E2_800 0.53 -0.1
931,571 - Pf6N2E2_800 0.54 -0.3
931,571 - Pf6N2E2_800 0.54 +0.1
931,571 - Pf6N2E2_800 0.54 +0.1
931,571 - Pf6N2E2_800 0.54 +1.3
931,571 - Pf6N2E2_800 0.54 -0.8
931,571 - Pf6N2E2_800 0.54 +0.7
931,571 - Pf6N2E2_800 0.54 +2.4
931,779 + +0.6
931,779 + +0.1
931,780 - -0.9
931,780 - +1.3
931,780 - +0.6
932,107 + Pf6N2E2_801 0.29 +0.4
932,108 - Pf6N2E2_801 0.29 +1.1
932,108 - Pf6N2E2_801 0.29 -0.0
932,108 - Pf6N2E2_801 0.29 -0.1
932,117 - Pf6N2E2_801 0.30 -0.6
932,117 - Pf6N2E2_801 0.30 +0.9
932,281 + Pf6N2E2_801 0.44 -1.4
932,282 - Pf6N2E2_801 0.44 -0.8
932,292 + Pf6N2E2_801 0.45 -1.8
932,292 + Pf6N2E2_801 0.45 -1.2
932,293 - Pf6N2E2_801 0.45 -3.7
932,293 - Pf6N2E2_801 0.45 -2.0
932,293 - Pf6N2E2_801 0.45 +1.0
932,365 + Pf6N2E2_801 0.52 -2.3
932,429 + Pf6N2E2_801 0.57 -3.8
932,429 + Pf6N2E2_801 0.57 -0.9
932,429 + Pf6N2E2_801 0.57 +0.2
932,429 + Pf6N2E2_801 0.57 -1.3
932,429 + Pf6N2E2_801 0.57 +0.2
932,429 + Pf6N2E2_801 0.57 +0.5
932,430 - Pf6N2E2_801 0.57 -2.2
932,430 - Pf6N2E2_801 0.57 -0.1
932,430 - Pf6N2E2_801 0.57 +1.1
932,430 - Pf6N2E2_801 0.57 +0.8
932,554 + Pf6N2E2_801 0.68 +1.3
932,554 + Pf6N2E2_801 0.68 +0.0
932,554 + Pf6N2E2_801 0.68 +0.6
932,555 - Pf6N2E2_801 0.68 -0.2
932,587 + Pf6N2E2_801 0.71 -1.3
932,587 + Pf6N2E2_801 0.71 -0.3
932,588 - Pf6N2E2_801 0.71 -1.0
932,692 + Pf6N2E2_801 0.80 -0.9
932,692 + Pf6N2E2_801 0.80 -1.8
932,692 + Pf6N2E2_801 0.80 -0.9
932,860 + -1.3
932,860 + +1.0
932,861 - -0.3
932,866 + -2.7
932,866 + +1.2
932,866 + -2.7
932,866 + -0.2
932,866 + +3.1
932,866 + +0.7
932,867 - -0.2
932,867 - +0.3
932,867 - +0.7
932,867 - -2.1
932,867 - -0.9
932,867 - +0.4
932,867 - +1.1
932,867 - +1.9
932,867 - +0.7
932,867 - +0.0
932,899 + +0.7
932,899 + +0.2
932,899 + -0.5
932,917 + -2.5
932,958 + +0.2
932,978 + -1.7
932,978 + +0.1
933,072 + +0.2
933,073 - +1.2
933,152 - -0.0
933,152 - +0.4
933,152 - +0.6
933,152 - +0.2
933,167 + +0.6
933,167 + +1.2
933,168 - +0.2
933,168 - -0.2
933,180 - -0.2
933,301 + +0.2
933,301 + -0.1
933,301 + -0.0
933,301 + -0.7
933,302 - +0.3
933,302 - +1.3
933,302 - +0.9
933,302 - -0.4
933,302 - +0.8
933,302 - +0.1
933,306 + +0.4
933,306 + +1.3
933,306 + -1.1
933,307 - +0.2
933,331 + +0.8
933,331 + -0.1
933,332 - -2.3
933,332 - +1.7
933,454 + Pf6N2E2_802 0.19 +0.6
933,455 - Pf6N2E2_802 0.19 -0.3
933,455 - Pf6N2E2_802 0.19 -0.5
933,455 - Pf6N2E2_802 0.19 -0.6
933,561 + Pf6N2E2_802 0.30 +0.0
933,562 - Pf6N2E2_802 0.30 +0.5
933,853 + Pf6N2E2_802 0.59 +0.8
933,854 - Pf6N2E2_802 0.59 -0.3
933,854 - Pf6N2E2_802 0.59 +0.5
933,862 + Pf6N2E2_802 0.60 +1.5
933,863 - Pf6N2E2_802 0.60 +0.5
933,878 + Pf6N2E2_802 0.61 -3.3
933,879 - Pf6N2E2_802 0.61 +0.7
933,879 - Pf6N2E2_802 0.61 -0.3
933,879 - Pf6N2E2_802 0.61 +0.7

Or see this region's nucleotide sequence