Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_598 and Pf6N2E2_599 are separated by 93 nucleotides Pf6N2E2_599 and Pf6N2E2_600 overlap by 1 nucleotides Pf6N2E2_600 and Pf6N2E2_601 overlap by 4 nucleotides Pf6N2E2_601 and Pf6N2E2_602 are separated by 45 nucleotides
Pf6N2E2_598 - hypothetical protein, at 673,984 to 674,145
_598
Pf6N2E2_599 - NAD kinase (EC 2.7.1.23), at 674,239 to 675,129
_599
Pf6N2E2_600 - Diadenosine tetraphosphatase and related serine/threonine protein phosphatases, at 675,129 to 676,100
_600
Pf6N2E2_601 - GlpG protein (membrane protein of glp regulon), at 676,097 to 676,969
_601
Pf6N2E2_602 - FIG00954117: hypothetical protein, at 677,015 to 677,275
_602
Position (kb) 675
676
677 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 674.178 kb on + strand at 674.197 kb on + strand at 675.423 kb on + strand, within Pf6N2E2_600 at 675.423 kb on + strand, within Pf6N2E2_600 at 675.424 kb on - strand at 675.526 kb on - strand, within Pf6N2E2_600 at 675.933 kb on + strand, within Pf6N2E2_600 at 675.988 kb on - strand, within Pf6N2E2_600 at 676.256 kb on + strand, within Pf6N2E2_601 at 676.257 kb on - strand, within Pf6N2E2_601 at 676.257 kb on - strand, within Pf6N2E2_601 at 676.257 kb on - strand, within Pf6N2E2_601 at 676.475 kb on + strand, within Pf6N2E2_601 at 676.475 kb on + strand, within Pf6N2E2_601 at 676.476 kb on - strand, within Pf6N2E2_601 at 676.476 kb on - strand, within Pf6N2E2_601 at 676.760 kb on + strand, within Pf6N2E2_601 at 676.787 kb on + strand, within Pf6N2E2_601 at 676.954 kb on + strand at 677.060 kb on + strand, within Pf6N2E2_602
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 674,178 + -0.9 674,197 + +0.0 675,423 + Pf6N2E2_600 0.30 -2.1 675,423 + Pf6N2E2_600 0.30 -2.1 675,424 - -0.6 675,526 - Pf6N2E2_600 0.41 -1.2 675,933 + Pf6N2E2_600 0.83 -2.7 675,988 - Pf6N2E2_600 0.88 -1.2 676,256 + Pf6N2E2_601 0.18 +1.5 676,257 - Pf6N2E2_601 0.18 +0.7 676,257 - Pf6N2E2_601 0.18 +0.9 676,257 - Pf6N2E2_601 0.18 -1.4 676,475 + Pf6N2E2_601 0.43 -2.1 676,475 + Pf6N2E2_601 0.43 -2.9 676,476 - Pf6N2E2_601 0.43 -0.3 676,476 - Pf6N2E2_601 0.43 -3.1 676,760 + Pf6N2E2_601 0.76 -0.0 676,787 + Pf6N2E2_601 0.79 +0.1 676,954 + +0.7 677,060 + Pf6N2E2_602 0.17 +1.3
Or see this region's nucleotide sequence