Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5989 and Pf6N2E2_5990 are separated by 85 nucleotides Pf6N2E2_5990 and Pf6N2E2_5991 are separated by 148 nucleotides Pf6N2E2_5991 and Pf6N2E2_5992 are separated by 54 nucleotides Pf6N2E2_5992 and Pf6N2E2_5993 are separated by 141 nucleotides
Pf6N2E2_5989 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 6,806,444 to 6,807,886
_5989
Pf6N2E2_5990 - Translation initiation factor 2 (IF-2; GTPase), at 6,807,972 to 6,808,448
_5990
Pf6N2E2_5991 - proteinase inhibitor, at 6,808,597 to 6,808,851
_5991
Pf6N2E2_5992 - Collagenase and related proteases, at 6,808,906 to 6,809,514
_5992
Pf6N2E2_5993 - FIG00957412: hypothetical protein, at 6,809,656 to 6,809,892
_5993
Position (kb)
6808
6809 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6807.608 kb on + strand, within Pf6N2E2_5989 at 6807.608 kb on + strand, within Pf6N2E2_5989 at 6807.608 kb on + strand, within Pf6N2E2_5989 at 6807.608 kb on + strand, within Pf6N2E2_5989 at 6807.609 kb on - strand, within Pf6N2E2_5989 at 6807.609 kb on - strand, within Pf6N2E2_5989 at 6807.609 kb on - strand, within Pf6N2E2_5989 at 6807.609 kb on - strand, within Pf6N2E2_5989 at 6807.609 kb on - strand, within Pf6N2E2_5989 at 6807.884 kb on + strand at 6807.899 kb on + strand at 6807.927 kb on + strand at 6807.967 kb on + strand at 6807.968 kb on - strand at 6807.968 kb on - strand at 6807.968 kb on - strand at 6807.968 kb on - strand at 6807.968 kb on - strand at 6807.968 kb on - strand at 6807.968 kb on - strand at 6807.971 kb on + strand at 6807.971 kb on + strand at 6807.972 kb on - strand at 6808.040 kb on - strand, within Pf6N2E2_5990 at 6808.040 kb on - strand, within Pf6N2E2_5990 at 6808.446 kb on + strand at 6808.446 kb on + strand at 6808.446 kb on + strand at 6808.446 kb on + strand at 6808.447 kb on - strand at 6808.526 kb on + strand at 6808.526 kb on + strand at 6808.540 kb on + strand at 6808.541 kb on - strand at 6808.562 kb on + strand at 6808.563 kb on - strand at 6808.563 kb on - strand at 6808.566 kb on - strand at 6808.572 kb on + strand at 6808.573 kb on - strand at 6808.573 kb on - strand at 6808.573 kb on - strand at 6808.573 kb on - strand at 6808.653 kb on + strand, within Pf6N2E2_5991 at 6808.653 kb on + strand, within Pf6N2E2_5991 at 6808.654 kb on - strand, within Pf6N2E2_5991 at 6808.654 kb on - strand, within Pf6N2E2_5991 at 6808.849 kb on + strand at 6808.849 kb on + strand at 6808.850 kb on - strand at 6808.871 kb on + strand at 6808.871 kb on + strand at 6808.871 kb on + strand at 6808.872 kb on - strand at 6808.892 kb on + strand at 6808.893 kb on - strand at 6808.905 kb on + strand at 6808.905 kb on + strand at 6808.905 kb on + strand at 6808.905 kb on + strand at 6808.905 kb on + strand at 6808.923 kb on + strand at 6808.923 kb on + strand at 6808.924 kb on - strand at 6808.924 kb on - strand at 6808.924 kb on - strand at 6809.011 kb on - strand, within Pf6N2E2_5992 at 6809.047 kb on + strand, within Pf6N2E2_5992 at 6809.048 kb on - strand, within Pf6N2E2_5992 at 6809.048 kb on - strand, within Pf6N2E2_5992 at 6809.048 kb on - strand, within Pf6N2E2_5992 at 6809.048 kb on - strand, within Pf6N2E2_5992 at 6809.048 kb on - strand, within Pf6N2E2_5992 at 6809.194 kb on + strand, within Pf6N2E2_5992 at 6809.194 kb on + strand, within Pf6N2E2_5992 at 6809.194 kb on + strand, within Pf6N2E2_5992 at 6809.402 kb on - strand, within Pf6N2E2_5992 at 6809.432 kb on + strand, within Pf6N2E2_5992 at 6809.432 kb on + strand, within Pf6N2E2_5992 at 6809.433 kb on - strand at 6809.433 kb on - strand, within Pf6N2E2_5992 at 6809.616 kb on + strand at 6809.617 kb on - strand at 6809.617 kb on - strand at 6809.617 kb on - strand at 6809.617 kb on - strand at 6809.733 kb on + strand, within Pf6N2E2_5993 at 6809.734 kb on - strand, within Pf6N2E2_5993
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 6,807,608 + Pf6N2E2_5989 0.81 -2.9 6,807,608 + Pf6N2E2_5989 0.81 -0.9 6,807,608 + Pf6N2E2_5989 0.81 -0.6 6,807,608 + Pf6N2E2_5989 0.81 +1.0 6,807,609 - Pf6N2E2_5989 0.81 -0.5 6,807,609 - Pf6N2E2_5989 0.81 -0.4 6,807,609 - Pf6N2E2_5989 0.81 +0.2 6,807,609 - Pf6N2E2_5989 0.81 +0.5 6,807,609 - Pf6N2E2_5989 0.81 +0.3 6,807,884 + +0.4 6,807,899 + -0.1 6,807,927 + +1.0 6,807,967 + -0.1 6,807,968 - -0.9 6,807,968 - +0.8 6,807,968 - -0.2 6,807,968 - -1.1 6,807,968 - +0.1 6,807,968 - +0.6 6,807,968 - +0.5 6,807,971 + +0.9 6,807,971 + +0.5 6,807,972 - -0.3 6,808,040 - Pf6N2E2_5990 0.14 -0.1 6,808,040 - Pf6N2E2_5990 0.14 -0.1 6,808,446 + -3.2 6,808,446 + +0.2 6,808,446 + +1.5 6,808,446 + +0.3 6,808,447 - -0.7 6,808,526 + -0.4 6,808,526 + -1.8 6,808,540 + +1.2 6,808,541 - +1.1 6,808,562 + -0.2 6,808,563 - +0.2 6,808,563 - -1.0 6,808,566 - -0.6 6,808,572 + +0.6 6,808,573 - +1.5 6,808,573 - -0.4 6,808,573 - +0.4 6,808,573 - +1.3 6,808,653 + Pf6N2E2_5991 0.22 -2.1 6,808,653 + Pf6N2E2_5991 0.22 -2.5 6,808,654 - Pf6N2E2_5991 0.22 -1.4 6,808,654 - Pf6N2E2_5991 0.22 +0.4 6,808,849 + +0.4 6,808,849 + +0.5 6,808,850 - -1.8 6,808,871 + +0.2 6,808,871 + +1.7 6,808,871 + +0.2 6,808,872 - -0.1 6,808,892 + -0.5 6,808,893 - -2.1 6,808,905 + -1.0 6,808,905 + +0.6 6,808,905 + +0.9 6,808,905 + +0.1 6,808,905 + +0.2 6,808,923 + +1.7 6,808,923 + +0.5 6,808,924 - +1.2 6,808,924 - +1.9 6,808,924 - -2.7 6,809,011 - Pf6N2E2_5992 0.17 +0.8 6,809,047 + Pf6N2E2_5992 0.23 +0.0 6,809,048 - Pf6N2E2_5992 0.23 +1.6 6,809,048 - Pf6N2E2_5992 0.23 +1.1 6,809,048 - Pf6N2E2_5992 0.23 -0.1 6,809,048 - Pf6N2E2_5992 0.23 +1.2 6,809,048 - Pf6N2E2_5992 0.23 -2.8 6,809,194 + Pf6N2E2_5992 0.47 -0.9 6,809,194 + Pf6N2E2_5992 0.47 +1.9 6,809,194 + Pf6N2E2_5992 0.47 +0.2 6,809,402 - Pf6N2E2_5992 0.81 -0.4 6,809,432 + Pf6N2E2_5992 0.86 -0.3 6,809,432 + Pf6N2E2_5992 0.86 -0.5 6,809,433 - -0.1 6,809,433 - Pf6N2E2_5992 0.87 -0.3 6,809,616 + +0.1 6,809,617 - +0.1 6,809,617 - +0.0 6,809,617 - -0.6 6,809,617 - +0.9 6,809,733 + Pf6N2E2_5993 0.32 +0.6 6,809,734 - Pf6N2E2_5993 0.33 +1.5
Or see this region's nucleotide sequence