Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5991

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5989 and Pf6N2E2_5990 are separated by 85 nucleotidesPf6N2E2_5990 and Pf6N2E2_5991 are separated by 148 nucleotidesPf6N2E2_5991 and Pf6N2E2_5992 are separated by 54 nucleotidesPf6N2E2_5992 and Pf6N2E2_5993 are separated by 141 nucleotides Pf6N2E2_5989 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 6,806,444 to 6,807,886 _5989 Pf6N2E2_5990 - Translation initiation factor 2 (IF-2; GTPase), at 6,807,972 to 6,808,448 _5990 Pf6N2E2_5991 - proteinase inhibitor, at 6,808,597 to 6,808,851 _5991 Pf6N2E2_5992 - Collagenase and related proteases, at 6,808,906 to 6,809,514 _5992 Pf6N2E2_5993 - FIG00957412: hypothetical protein, at 6,809,656 to 6,809,892 _5993 Position (kb) 6808 6809Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6807.608 kb on + strand, within Pf6N2E2_5989at 6807.608 kb on + strand, within Pf6N2E2_5989at 6807.608 kb on + strand, within Pf6N2E2_5989at 6807.608 kb on + strand, within Pf6N2E2_5989at 6807.609 kb on - strand, within Pf6N2E2_5989at 6807.609 kb on - strand, within Pf6N2E2_5989at 6807.609 kb on - strand, within Pf6N2E2_5989at 6807.609 kb on - strand, within Pf6N2E2_5989at 6807.609 kb on - strand, within Pf6N2E2_5989at 6807.884 kb on + strandat 6807.899 kb on + strandat 6807.927 kb on + strandat 6807.967 kb on + strandat 6807.968 kb on - strandat 6807.968 kb on - strandat 6807.968 kb on - strandat 6807.968 kb on - strandat 6807.968 kb on - strandat 6807.968 kb on - strandat 6807.968 kb on - strandat 6807.971 kb on + strandat 6807.971 kb on + strandat 6807.972 kb on - strandat 6808.040 kb on - strand, within Pf6N2E2_5990at 6808.040 kb on - strand, within Pf6N2E2_5990at 6808.446 kb on + strandat 6808.446 kb on + strandat 6808.446 kb on + strandat 6808.446 kb on + strandat 6808.447 kb on - strandat 6808.526 kb on + strandat 6808.526 kb on + strandat 6808.540 kb on + strandat 6808.541 kb on - strandat 6808.562 kb on + strandat 6808.563 kb on - strandat 6808.563 kb on - strandat 6808.566 kb on - strandat 6808.572 kb on + strandat 6808.573 kb on - strandat 6808.573 kb on - strandat 6808.573 kb on - strandat 6808.573 kb on - strandat 6808.653 kb on + strand, within Pf6N2E2_5991at 6808.653 kb on + strand, within Pf6N2E2_5991at 6808.654 kb on - strand, within Pf6N2E2_5991at 6808.654 kb on - strand, within Pf6N2E2_5991at 6808.849 kb on + strandat 6808.849 kb on + strandat 6808.850 kb on - strandat 6808.871 kb on + strandat 6808.871 kb on + strandat 6808.871 kb on + strandat 6808.872 kb on - strandat 6808.892 kb on + strandat 6808.893 kb on - strandat 6808.905 kb on + strandat 6808.905 kb on + strandat 6808.905 kb on + strandat 6808.905 kb on + strandat 6808.905 kb on + strandat 6808.923 kb on + strandat 6808.923 kb on + strandat 6808.924 kb on - strandat 6808.924 kb on - strandat 6808.924 kb on - strandat 6809.011 kb on - strand, within Pf6N2E2_5992at 6809.047 kb on + strand, within Pf6N2E2_5992at 6809.048 kb on - strand, within Pf6N2E2_5992at 6809.048 kb on - strand, within Pf6N2E2_5992at 6809.048 kb on - strand, within Pf6N2E2_5992at 6809.048 kb on - strand, within Pf6N2E2_5992at 6809.048 kb on - strand, within Pf6N2E2_5992at 6809.194 kb on + strand, within Pf6N2E2_5992at 6809.194 kb on + strand, within Pf6N2E2_5992at 6809.194 kb on + strand, within Pf6N2E2_5992at 6809.402 kb on - strand, within Pf6N2E2_5992at 6809.432 kb on + strand, within Pf6N2E2_5992at 6809.432 kb on + strand, within Pf6N2E2_5992at 6809.433 kb on - strandat 6809.433 kb on - strand, within Pf6N2E2_5992at 6809.616 kb on + strandat 6809.617 kb on - strandat 6809.617 kb on - strandat 6809.617 kb on - strandat 6809.617 kb on - strandat 6809.733 kb on + strand, within Pf6N2E2_5993at 6809.734 kb on - strand, within Pf6N2E2_5993

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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6,807,608 + Pf6N2E2_5989 0.81 -2.9
6,807,608 + Pf6N2E2_5989 0.81 -0.9
6,807,608 + Pf6N2E2_5989 0.81 -0.6
6,807,608 + Pf6N2E2_5989 0.81 +1.0
6,807,609 - Pf6N2E2_5989 0.81 -0.5
6,807,609 - Pf6N2E2_5989 0.81 -0.4
6,807,609 - Pf6N2E2_5989 0.81 +0.2
6,807,609 - Pf6N2E2_5989 0.81 +0.5
6,807,609 - Pf6N2E2_5989 0.81 +0.3
6,807,884 + +0.4
6,807,899 + -0.1
6,807,927 + +1.0
6,807,967 + -0.1
6,807,968 - -0.9
6,807,968 - +0.8
6,807,968 - -0.2
6,807,968 - -1.1
6,807,968 - +0.1
6,807,968 - +0.6
6,807,968 - +0.5
6,807,971 + +0.9
6,807,971 + +0.5
6,807,972 - -0.3
6,808,040 - Pf6N2E2_5990 0.14 -0.1
6,808,040 - Pf6N2E2_5990 0.14 -0.1
6,808,446 + -3.2
6,808,446 + +0.2
6,808,446 + +1.5
6,808,446 + +0.3
6,808,447 - -0.7
6,808,526 + -0.4
6,808,526 + -1.8
6,808,540 + +1.2
6,808,541 - +1.1
6,808,562 + -0.2
6,808,563 - +0.2
6,808,563 - -1.0
6,808,566 - -0.6
6,808,572 + +0.6
6,808,573 - +1.5
6,808,573 - -0.4
6,808,573 - +0.4
6,808,573 - +1.3
6,808,653 + Pf6N2E2_5991 0.22 -2.1
6,808,653 + Pf6N2E2_5991 0.22 -2.5
6,808,654 - Pf6N2E2_5991 0.22 -1.4
6,808,654 - Pf6N2E2_5991 0.22 +0.4
6,808,849 + +0.4
6,808,849 + +0.5
6,808,850 - -1.8
6,808,871 + +0.2
6,808,871 + +1.7
6,808,871 + +0.2
6,808,872 - -0.1
6,808,892 + -0.5
6,808,893 - -2.1
6,808,905 + -1.0
6,808,905 + +0.6
6,808,905 + +0.9
6,808,905 + +0.1
6,808,905 + +0.2
6,808,923 + +1.7
6,808,923 + +0.5
6,808,924 - +1.2
6,808,924 - +1.9
6,808,924 - -2.7
6,809,011 - Pf6N2E2_5992 0.17 +0.8
6,809,047 + Pf6N2E2_5992 0.23 +0.0
6,809,048 - Pf6N2E2_5992 0.23 +1.6
6,809,048 - Pf6N2E2_5992 0.23 +1.1
6,809,048 - Pf6N2E2_5992 0.23 -0.1
6,809,048 - Pf6N2E2_5992 0.23 +1.2
6,809,048 - Pf6N2E2_5992 0.23 -2.8
6,809,194 + Pf6N2E2_5992 0.47 -0.9
6,809,194 + Pf6N2E2_5992 0.47 +1.9
6,809,194 + Pf6N2E2_5992 0.47 +0.2
6,809,402 - Pf6N2E2_5992 0.81 -0.4
6,809,432 + Pf6N2E2_5992 0.86 -0.3
6,809,432 + Pf6N2E2_5992 0.86 -0.5
6,809,433 - -0.1
6,809,433 - Pf6N2E2_5992 0.87 -0.3
6,809,616 + +0.1
6,809,617 - +0.1
6,809,617 - +0.0
6,809,617 - -0.6
6,809,617 - +0.9
6,809,733 + Pf6N2E2_5993 0.32 +0.6
6,809,734 - Pf6N2E2_5993 0.33 +1.5

Or see this region's nucleotide sequence