Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5814 and Pf6N2E2_5815 are separated by 8 nucleotides Pf6N2E2_5815 and Pf6N2E2_5816 are separated by 77 nucleotides Pf6N2E2_5816 and Pf6N2E2_5817 are separated by 73 nucleotides Pf6N2E2_5817 and Pf6N2E2_5818 are separated by 130 nucleotides
Pf6N2E2_5814 - Glutaredoxin, at 6,633,782 to 6,634,249
_5814
Pf6N2E2_5815 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 6,634,258 to 6,634,803
_5815
Pf6N2E2_5816 - Smr domain protein, at 6,634,881 to 6,635,438
_5816
Pf6N2E2_5817 - FIG00956876: hypothetical protein, at 6,635,512 to 6,635,832
_5817
Pf6N2E2_5818 - Isochorismatase (EC 3.3.2.1), at 6,635,963 to 6,636,553
_5818
Position (kb)
6634
6635
6636 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 6633.956 kb on + strand, within Pf6N2E2_5814 at 6634.017 kb on + strand, within Pf6N2E2_5814 at 6634.157 kb on - strand, within Pf6N2E2_5814 at 6634.160 kb on - strand, within Pf6N2E2_5814 at 6634.160 kb on - strand, within Pf6N2E2_5814 at 6634.160 kb on - strand, within Pf6N2E2_5814 at 6634.195 kb on + strand, within Pf6N2E2_5814 at 6634.196 kb on - strand, within Pf6N2E2_5814 at 6634.259 kb on + strand at 6634.260 kb on - strand at 6634.882 kb on + strand at 6634.883 kb on - strand at 6634.883 kb on - strand at 6635.031 kb on - strand, within Pf6N2E2_5816 at 6635.031 kb on - strand, within Pf6N2E2_5816 at 6636.063 kb on + strand, within Pf6N2E2_5818
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 6,633,956 + Pf6N2E2_5814 0.37 -0.0 6,634,017 + Pf6N2E2_5814 0.50 +1.3 6,634,157 - Pf6N2E2_5814 0.80 +0.7 6,634,160 - Pf6N2E2_5814 0.81 +0.6 6,634,160 - Pf6N2E2_5814 0.81 +0.9 6,634,160 - Pf6N2E2_5814 0.81 +0.3 6,634,195 + Pf6N2E2_5814 0.88 +0.7 6,634,196 - Pf6N2E2_5814 0.88 +0.5 6,634,259 + +0.6 6,634,260 - +0.1 6,634,882 + -0.3 6,634,883 - +0.5 6,634,883 - +0.3 6,635,031 - Pf6N2E2_5816 0.27 -1.3 6,635,031 - Pf6N2E2_5816 0.27 -3.1 6,636,063 + Pf6N2E2_5818 0.17 -1.3
Or see this region's nucleotide sequence