Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_531 and Pf6N2E2_532 are separated by 484 nucleotides Pf6N2E2_532 and Pf6N2E2_533 are separated by 179 nucleotides Pf6N2E2_533 and Pf6N2E2_534 overlap by 4 nucleotides Pf6N2E2_534 and Pf6N2E2_535 overlap by 4 nucleotides Pf6N2E2_535 and Pf6N2E2_536 overlap by 4 nucleotides
Pf6N2E2_531 - FIG00966599: hypothetical protein, at 600,519 to 600,956
_531
Pf6N2E2_532 - Na(+) H(+) antiporter subunit G, at 601,441 to 601,554
_532
Pf6N2E2_533 - Na(+) H(+) antiporter subunit G, at 601,734 to 602,087
_533
Pf6N2E2_534 - Na(+) H(+) antiporter subunit F, at 602,084 to 602,362
_534
Pf6N2E2_535 - Na(+) H(+) antiporter subunit E, at 602,359 to 602,847
_535
Pf6N2E2_536 - Na(+) H(+) antiporter subunit D, at 602,844 to 604,529
_536
Position (kb) 601
602
603 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 601.169 kb on + strand at 601.979 kb on - strand, within Pf6N2E2_533 at 601.979 kb on - strand, within Pf6N2E2_533 at 601.979 kb on - strand, within Pf6N2E2_533 at 601.979 kb on - strand, within Pf6N2E2_533 at 601.979 kb on - strand, within Pf6N2E2_533 at 602.175 kb on + strand, within Pf6N2E2_534 at 602.176 kb on - strand, within Pf6N2E2_534 at 602.176 kb on - strand, within Pf6N2E2_534 at 602.176 kb on - strand, within Pf6N2E2_534 at 602.232 kb on + strand, within Pf6N2E2_534 at 602.232 kb on + strand, within Pf6N2E2_534 at 602.232 kb on + strand, within Pf6N2E2_534 at 602.232 kb on + strand, within Pf6N2E2_534 at 602.232 kb on + strand, within Pf6N2E2_534 at 602.232 kb on + strand, within Pf6N2E2_534 at 602.232 kb on + strand, within Pf6N2E2_534 at 602.233 kb on - strand, within Pf6N2E2_534 at 602.233 kb on - strand, within Pf6N2E2_534 at 602.233 kb on - strand, within Pf6N2E2_534 at 602.233 kb on - strand, within Pf6N2E2_534 at 602.233 kb on - strand, within Pf6N2E2_534 at 602.239 kb on - strand, within Pf6N2E2_534 at 602.239 kb on - strand, within Pf6N2E2_534 at 602.390 kb on + strand at 602.391 kb on - strand at 602.391 kb on - strand at 602.920 kb on + strand at 602.920 kb on + strand at 602.920 kb on + strand at 602.920 kb on + strand at 602.921 kb on - strand at 602.921 kb on - strand at 602.921 kb on - strand at 602.921 kb on - strand at 602.921 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 601,169 + -0.9 601,979 - Pf6N2E2_533 0.69 -2.1 601,979 - Pf6N2E2_533 0.69 -2.2 601,979 - Pf6N2E2_533 0.69 -1.8 601,979 - Pf6N2E2_533 0.69 +0.4 601,979 - Pf6N2E2_533 0.69 -0.8 602,175 + Pf6N2E2_534 0.33 +0.2 602,176 - Pf6N2E2_534 0.33 -0.4 602,176 - Pf6N2E2_534 0.33 -0.8 602,176 - Pf6N2E2_534 0.33 +1.8 602,232 + Pf6N2E2_534 0.53 +1.3 602,232 + Pf6N2E2_534 0.53 +0.3 602,232 + Pf6N2E2_534 0.53 -3.1 602,232 + Pf6N2E2_534 0.53 +1.2 602,232 + Pf6N2E2_534 0.53 -2.8 602,232 + Pf6N2E2_534 0.53 +0.4 602,232 + Pf6N2E2_534 0.53 +0.0 602,233 - Pf6N2E2_534 0.53 +0.4 602,233 - Pf6N2E2_534 0.53 +0.4 602,233 - Pf6N2E2_534 0.53 +0.2 602,233 - Pf6N2E2_534 0.53 +0.6 602,233 - Pf6N2E2_534 0.53 -3.4 602,239 - Pf6N2E2_534 0.56 +3.0 602,239 - Pf6N2E2_534 0.56 -3.3 602,390 + -2.1 602,391 - +0.2 602,391 - +0.9 602,920 + +0.5 602,920 + +1.1 602,920 + +1.4 602,920 + +0.6 602,921 - -0.0 602,921 - +1.6 602,921 - +0.7 602,921 - -1.3 602,921 - +0.9
Or see this region's nucleotide sequence