Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5155

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5153 and Pf6N2E2_5154 are separated by 275 nucleotidesPf6N2E2_5154 and Pf6N2E2_5155 are separated by 3 nucleotidesPf6N2E2_5155 and Pf6N2E2_5156 are separated by 718 nucleotides Pf6N2E2_5153 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11), at 5,940,125 to 5,940,925 _5153 Pf6N2E2_5154 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3), at 5,941,201 to 5,941,686 _5154 Pf6N2E2_5155 - Poly(A) polymerase (EC 2.7.7.19), at 5,941,690 to 5,943,087 _5155 Pf6N2E2_5156 - Two-component sensor CbrB: intrcellular carbon:nitrogen balance, at 5,943,806 to 5,945,239 _5156 Position (kb) 5941 5942 5943 5944Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5940.726 kb on + strand, within Pf6N2E2_5153at 5940.727 kb on - strand, within Pf6N2E2_5153at 5940.853 kb on - strandat 5940.853 kb on - strandat 5940.853 kb on - strandat 5940.914 kb on - strandat 5940.916 kb on + strandat 5940.916 kb on + strandat 5940.916 kb on + strandat 5940.916 kb on + strandat 5940.917 kb on - strandat 5940.917 kb on - strandat 5940.917 kb on - strandat 5940.917 kb on - strandat 5940.940 kb on + strandat 5940.941 kb on - strandat 5940.955 kb on + strandat 5940.956 kb on - strandat 5940.965 kb on - strandat 5940.985 kb on + strandat 5940.985 kb on + strandat 5940.985 kb on + strandat 5940.985 kb on + strandat 5940.985 kb on + strandat 5940.985 kb on + strandat 5940.985 kb on + strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.988 kb on - strandat 5941.002 kb on + strandat 5941.002 kb on + strandat 5941.002 kb on + strandat 5941.002 kb on + strandat 5941.003 kb on - strandat 5941.003 kb on - strandat 5941.003 kb on - strandat 5941.003 kb on - strandat 5941.017 kb on + strandat 5941.018 kb on - strandat 5941.018 kb on - strandat 5941.018 kb on - strandat 5941.069 kb on - strandat 5941.069 kb on - strandat 5941.069 kb on - strandat 5941.070 kb on + strandat 5941.070 kb on + strandat 5941.070 kb on + strandat 5941.071 kb on - strandat 5941.071 kb on - strandat 5941.071 kb on - strandat 5941.071 kb on - strandat 5941.130 kb on + strandat 5941.206 kb on + strandat 5941.674 kb on - strandat 5941.674 kb on - strandat 5942.235 kb on - strand, within Pf6N2E2_5155at 5942.462 kb on - strand, within Pf6N2E2_5155at 5942.592 kb on - strand, within Pf6N2E2_5155at 5942.595 kb on - strand, within Pf6N2E2_5155at 5942.830 kb on + strand, within Pf6N2E2_5155at 5942.919 kb on - strand, within Pf6N2E2_5155at 5942.919 kb on - strand, within Pf6N2E2_5155at 5943.110 kb on - strandat 5943.154 kb on + strandat 5943.154 kb on + strandat 5943.155 kb on - strandat 5943.161 kb on + strandat 5943.161 kb on + strandat 5943.223 kb on + strandat 5943.224 kb on - strandat 5943.282 kb on + strandat 5943.283 kb on - strandat 5943.287 kb on - strandat 5943.302 kb on + strandat 5943.306 kb on - strandat 5943.468 kb on - strandat 5943.468 kb on - strandat 5943.503 kb on + strandat 5943.504 kb on - strandat 5943.504 kb on - strandat 5943.504 kb on - strandat 5943.504 kb on - strandat 5943.529 kb on + strandat 5943.530 kb on - strandat 5943.557 kb on - strandat 5943.581 kb on - strandat 5943.586 kb on + strandat 5943.608 kb on + strandat 5943.619 kb on + strandat 5943.628 kb on + strandat 5943.628 kb on + strandat 5943.629 kb on - strandat 5943.686 kb on + strandat 5943.686 kb on + strandat 5943.687 kb on - strandat 5943.688 kb on + strandat 5943.689 kb on - strandat 5943.732 kb on + strandat 5943.733 kb on - strandat 5943.733 kb on - strandat 5943.750 kb on - strandat 5943.768 kb on - strandat 5943.768 kb on - strandat 5943.955 kb on - strand, within Pf6N2E2_5156

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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5,940,726 + Pf6N2E2_5153 0.75 +1.0
5,940,727 - Pf6N2E2_5153 0.75 -1.3
5,940,853 - +0.0
5,940,853 - +1.1
5,940,853 - +1.0
5,940,914 - -0.5
5,940,916 + -2.2
5,940,916 + +1.3
5,940,916 + -0.9
5,940,916 + -0.5
5,940,917 - +0.9
5,940,917 - -0.8
5,940,917 - +1.6
5,940,917 - +0.3
5,940,940 + +0.4
5,940,941 - -0.1
5,940,955 + -0.9
5,940,956 - -0.4
5,940,965 - +1.2
5,940,985 + -1.0
5,940,985 + -0.6
5,940,985 + +1.3
5,940,985 + -0.7
5,940,985 + +0.9
5,940,985 + -0.6
5,940,985 + -0.3
5,940,986 - +0.9
5,940,986 - +2.1
5,940,986 - +1.6
5,940,986 - -1.2
5,940,986 - +1.7
5,940,986 - -1.9
5,940,986 - +0.1
5,940,986 - +2.8
5,940,986 - +1.3
5,940,986 - +0.7
5,940,986 - -0.0
5,940,986 - -0.5
5,940,988 - +1.1
5,941,002 + -0.1
5,941,002 + -2.2
5,941,002 + -0.6
5,941,002 + +1.1
5,941,003 - -0.7
5,941,003 - +1.0
5,941,003 - -0.5
5,941,003 - -0.6
5,941,017 + +0.6
5,941,018 - +0.1
5,941,018 - +0.6
5,941,018 - -0.9
5,941,069 - +2.0
5,941,069 - +0.8
5,941,069 - +1.1
5,941,070 + -0.1
5,941,070 + +0.5
5,941,070 + -3.1
5,941,071 - +0.6
5,941,071 - -2.1
5,941,071 - +0.4
5,941,071 - +0.3
5,941,130 + -0.9
5,941,206 + -0.0
5,941,674 - -0.3
5,941,674 - +0.4
5,942,235 - Pf6N2E2_5155 0.39 -1.3
5,942,462 - Pf6N2E2_5155 0.55 -2.9
5,942,592 - Pf6N2E2_5155 0.65 +1.6
5,942,595 - Pf6N2E2_5155 0.65 +0.4
5,942,830 + Pf6N2E2_5155 0.82 -1.6
5,942,919 - Pf6N2E2_5155 0.88 -1.9
5,942,919 - Pf6N2E2_5155 0.88 -2.1
5,943,110 - -0.6
5,943,154 + -0.5
5,943,154 + -0.3
5,943,155 - -0.9
5,943,161 + +0.1
5,943,161 + +1.8
5,943,223 + -1.6
5,943,224 - -2.2
5,943,282 + -2.3
5,943,283 - -0.5
5,943,287 - +0.1
5,943,302 + +1.7
5,943,306 - -0.4
5,943,468 - -0.7
5,943,468 - -0.7
5,943,503 + +0.4
5,943,504 - +1.4
5,943,504 - -0.0
5,943,504 - +0.4
5,943,504 - +0.4
5,943,529 + -1.8
5,943,530 - +1.0
5,943,557 - +0.0
5,943,581 - +0.5
5,943,586 + -1.3
5,943,608 + +1.3
5,943,619 + -2.3
5,943,628 + +0.3
5,943,628 + +0.3
5,943,629 - +0.5
5,943,686 + +1.9
5,943,686 + -0.9
5,943,687 - +1.2
5,943,688 + -0.0
5,943,689 - -1.1
5,943,732 + +1.2
5,943,733 - +0.1
5,943,733 - +0.5
5,943,750 - +2.1
5,943,768 - +1.4
5,943,768 - +1.1
5,943,955 - Pf6N2E2_5156 0.10 -1.6

Or see this region's nucleotide sequence