Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5014

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5013 and Pf6N2E2_5014 are separated by 168 nucleotidesPf6N2E2_5014 and Pf6N2E2_5015 are separated by 27 nucleotidesPf6N2E2_5015 and Pf6N2E2_5016 are separated by 40 nucleotides Pf6N2E2_5013 - Putative membrane protein, at 5,779,651 to 5,780,412 _5013 Pf6N2E2_5014 - Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE, at 5,780,581 to 5,782,104 _5014 Pf6N2E2_5015 - Magnesium and cobalt efflux protein CorC, at 5,782,132 to 5,782,971 _5015 Pf6N2E2_5016 - Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly, at 5,783,012 to 5,783,470 _5016 Position (kb) 5780 5781 5782 5783Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5779.623 kb on - strandat 5779.637 kb on + strandat 5779.637 kb on + strandat 5779.637 kb on + strandat 5779.637 kb on + strandat 5779.637 kb on + strandat 5779.637 kb on + strandat 5779.637 kb on + strandat 5779.637 kb on + strandat 5779.637 kb on + strandat 5779.637 kb on + strandat 5779.637 kb on + strandat 5779.637 kb on + strandat 5779.638 kb on - strandat 5779.638 kb on - strandat 5779.638 kb on - strandat 5779.638 kb on - strandat 5779.638 kb on - strandat 5779.638 kb on - strandat 5779.638 kb on - strandat 5779.638 kb on - strandat 5779.664 kb on - strandat 5779.682 kb on + strandat 5779.682 kb on + strandat 5779.682 kb on + strandat 5779.682 kb on + strandat 5779.683 kb on - strandat 5779.683 kb on - strandat 5779.683 kb on - strandat 5779.683 kb on - strandat 5779.956 kb on + strand, within Pf6N2E2_5013at 5779.956 kb on + strand, within Pf6N2E2_5013at 5780.044 kb on + strand, within Pf6N2E2_5013at 5780.130 kb on + strand, within Pf6N2E2_5013at 5780.404 kb on + strandat 5780.405 kb on - strandat 5780.434 kb on + strandat 5780.453 kb on + strandat 5780.548 kb on + strandat 5780.549 kb on - strandat 5780.549 kb on - strandat 5781.087 kb on - strand, within Pf6N2E2_5014at 5782.380 kb on - strand, within Pf6N2E2_5015at 5782.380 kb on - strand, within Pf6N2E2_5015at 5782.380 kb on - strand, within Pf6N2E2_5015at 5782.380 kb on - strand, within Pf6N2E2_5015at 5782.380 kb on - strand, within Pf6N2E2_5015at 5782.380 kb on - strand, within Pf6N2E2_5015at 5782.380 kb on - strand, within Pf6N2E2_5015at 5782.380 kb on - strand, within Pf6N2E2_5015at 5782.380 kb on - strand, within Pf6N2E2_5015at 5782.380 kb on - strand, within Pf6N2E2_5015at 5783.011 kb on - strandat 5783.011 kb on - strandat 5783.011 kb on - strandat 5783.011 kb on - strandat 5783.011 kb on - strandat 5783.011 kb on - strandat 5783.011 kb on - strandat 5783.011 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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5,779,623 - +0.2
5,779,637 + +1.9
5,779,637 + +0.1
5,779,637 + +0.3
5,779,637 + +1.3
5,779,637 + +1.4
5,779,637 + -1.9
5,779,637 + +0.7
5,779,637 + -0.7
5,779,637 + +0.6
5,779,637 + +1.4
5,779,637 + -0.0
5,779,637 + +2.2
5,779,638 - -1.4
5,779,638 - +0.9
5,779,638 - -0.1
5,779,638 - -0.0
5,779,638 - +0.3
5,779,638 - +0.9
5,779,638 - -1.2
5,779,638 - -1.9
5,779,664 - +1.0
5,779,682 + +0.2
5,779,682 + -0.4
5,779,682 + +0.2
5,779,682 + +0.5
5,779,683 - +1.5
5,779,683 - -2.3
5,779,683 - +1.0
5,779,683 - +0.6
5,779,956 + Pf6N2E2_5013 0.40 +1.7
5,779,956 + Pf6N2E2_5013 0.40 +0.1
5,780,044 + Pf6N2E2_5013 0.52 -0.9
5,780,130 + Pf6N2E2_5013 0.63 +1.6
5,780,404 + -1.2
5,780,405 - -0.6
5,780,434 + +0.0
5,780,453 + +0.0
5,780,548 + +1.6
5,780,549 - -0.3
5,780,549 - +0.2
5,781,087 - Pf6N2E2_5014 0.33 -3.7
5,782,380 - Pf6N2E2_5015 0.30 +0.5
5,782,380 - Pf6N2E2_5015 0.30 +0.8
5,782,380 - Pf6N2E2_5015 0.30 -0.9
5,782,380 - Pf6N2E2_5015 0.30 +0.0
5,782,380 - Pf6N2E2_5015 0.30 +0.1
5,782,380 - Pf6N2E2_5015 0.30 -2.7
5,782,380 - Pf6N2E2_5015 0.30 +0.5
5,782,380 - Pf6N2E2_5015 0.30 +1.8
5,782,380 - Pf6N2E2_5015 0.30 +0.8
5,782,380 - Pf6N2E2_5015 0.30 +0.2
5,783,011 - -1.5
5,783,011 - -1.7
5,783,011 - +0.1
5,783,011 - -0.4
5,783,011 - +1.0
5,783,011 - -0.8
5,783,011 - -3.3
5,783,011 - +0.1

Or see this region's nucleotide sequence