Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4757 and Pf6N2E2_4758 are separated by 58 nucleotides Pf6N2E2_4758 and Pf6N2E2_4759 are separated by 91 nucleotides Pf6N2E2_4759 and Pf6N2E2_4760 overlap by 19 nucleotides Pf6N2E2_4760 and Pf6N2E2_4761 are separated by 36 nucleotides
Pf6N2E2_4757 - DNA-binding domain of ModE / Molybdate-binding domain of ModE, at 5,496,502 to 5,497,266
_4757
Pf6N2E2_4758 - Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy, at 5,497,325 to 5,498,065
_4758
Pf6N2E2_4759 - Biotin synthase (EC 2.8.1.6), at 5,498,157 to 5,499,212
_4759
Pf6N2E2_4760 - hypothetical protein, at 5,499,194 to 5,499,337
_4760
Pf6N2E2_4761 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 5,499,374 to 5,500,552
_4761
Position (kb)
5498
5499
5500 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 5497.365 kb on + strand at 5497.365 kb on + strand at 5497.365 kb on + strand at 5497.365 kb on + strand at 5497.366 kb on - strand at 5497.366 kb on - strand at 5497.366 kb on - strand at 5497.366 kb on - strand at 5497.821 kb on + strand, within Pf6N2E2_4758 at 5497.822 kb on - strand, within Pf6N2E2_4758 at 5497.822 kb on - strand, within Pf6N2E2_4758 at 5497.966 kb on + strand, within Pf6N2E2_4758 at 5497.966 kb on + strand, within Pf6N2E2_4758 at 5497.966 kb on + strand, within Pf6N2E2_4758 at 5497.967 kb on - strand, within Pf6N2E2_4758 at 5497.967 kb on - strand, within Pf6N2E2_4758 at 5497.967 kb on - strand, within Pf6N2E2_4758 at 5497.967 kb on - strand, within Pf6N2E2_4758 at 5498.076 kb on + strand at 5498.076 kb on + strand at 5498.076 kb on + strand at 5498.076 kb on + strand at 5498.076 kb on + strand at 5498.077 kb on - strand at 5498.077 kb on - strand at 5498.077 kb on - strand at 5498.080 kb on + strand at 5498.080 kb on + strand at 5498.080 kb on + strand at 5498.080 kb on + strand at 5498.081 kb on - strand at 5498.140 kb on + strand at 5498.140 kb on + strand at 5498.140 kb on + strand at 5498.141 kb on - strand at 5498.141 kb on - strand at 5498.141 kb on - strand at 5498.141 kb on - strand at 5498.141 kb on - strand at 5498.141 kb on - strand at 5498.141 kb on - strand at 5498.349 kb on + strand, within Pf6N2E2_4759 at 5498.349 kb on + strand, within Pf6N2E2_4759 at 5498.349 kb on + strand, within Pf6N2E2_4759 at 5498.349 kb on + strand, within Pf6N2E2_4759 at 5498.349 kb on + strand, within Pf6N2E2_4759 at 5498.350 kb on - strand, within Pf6N2E2_4759 at 5498.350 kb on - strand, within Pf6N2E2_4759 at 5498.350 kb on - strand, within Pf6N2E2_4759 at 5498.350 kb on - strand, within Pf6N2E2_4759 at 5498.350 kb on - strand, within Pf6N2E2_4759 at 5498.351 kb on - strand, within Pf6N2E2_4759 at 5498.370 kb on + strand, within Pf6N2E2_4759 at 5498.370 kb on + strand, within Pf6N2E2_4759 at 5498.370 kb on + strand, within Pf6N2E2_4759 at 5498.370 kb on + strand, within Pf6N2E2_4759 at 5498.370 kb on + strand, within Pf6N2E2_4759 at 5498.371 kb on - strand, within Pf6N2E2_4759 at 5498.371 kb on - strand, within Pf6N2E2_4759 at 5498.371 kb on - strand, within Pf6N2E2_4759 at 5498.371 kb on - strand, within Pf6N2E2_4759 at 5498.508 kb on + strand, within Pf6N2E2_4759 at 5498.508 kb on + strand, within Pf6N2E2_4759 at 5498.508 kb on + strand, within Pf6N2E2_4759 at 5498.508 kb on + strand, within Pf6N2E2_4759 at 5498.508 kb on + strand, within Pf6N2E2_4759 at 5498.508 kb on + strand, within Pf6N2E2_4759 at 5498.508 kb on + strand, within Pf6N2E2_4759 at 5498.508 kb on + strand, within Pf6N2E2_4759 at 5498.508 kb on + strand, within Pf6N2E2_4759 at 5498.508 kb on + strand, within Pf6N2E2_4759 at 5498.508 kb on + strand, within Pf6N2E2_4759 at 5498.508 kb on + strand, within Pf6N2E2_4759 at 5498.508 kb on + strand, within Pf6N2E2_4759 at 5498.509 kb on - strand, within Pf6N2E2_4759 at 5498.509 kb on - strand, within Pf6N2E2_4759 at 5498.509 kb on - strand, within Pf6N2E2_4759 at 5498.619 kb on + strand, within Pf6N2E2_4759 at 5498.619 kb on + strand, within Pf6N2E2_4759 at 5498.620 kb on - strand, within Pf6N2E2_4759 at 5498.622 kb on + strand, within Pf6N2E2_4759 at 5498.622 kb on + strand, within Pf6N2E2_4759 at 5498.622 kb on + strand, within Pf6N2E2_4759 at 5498.622 kb on + strand, within Pf6N2E2_4759 at 5498.622 kb on + strand, within Pf6N2E2_4759 at 5498.622 kb on + strand, within Pf6N2E2_4759 at 5498.622 kb on + strand, within Pf6N2E2_4759 at 5498.622 kb on + strand, within Pf6N2E2_4759 at 5498.622 kb on + strand, within Pf6N2E2_4759 at 5498.622 kb on + strand, within Pf6N2E2_4759 at 5498.622 kb on + strand, within Pf6N2E2_4759 at 5498.622 kb on + strand, within Pf6N2E2_4759 at 5498.623 kb on - strand, within Pf6N2E2_4759 at 5498.623 kb on - strand, within Pf6N2E2_4759 at 5498.623 kb on - strand, within Pf6N2E2_4759 at 5498.623 kb on - strand, within Pf6N2E2_4759 at 5498.623 kb on - strand, within Pf6N2E2_4759 at 5498.623 kb on - strand, within Pf6N2E2_4759 at 5498.623 kb on - strand, within Pf6N2E2_4759 at 5498.630 kb on + strand, within Pf6N2E2_4759 at 5498.630 kb on + strand, within Pf6N2E2_4759 at 5498.631 kb on - strand, within Pf6N2E2_4759 at 5498.631 kb on - strand, within Pf6N2E2_4759 at 5498.631 kb on - strand, within Pf6N2E2_4759 at 5498.656 kb on - strand, within Pf6N2E2_4759 at 5498.656 kb on - strand, within Pf6N2E2_4759 at 5498.683 kb on - strand, within Pf6N2E2_4759 at 5498.683 kb on - strand, within Pf6N2E2_4759 at 5498.709 kb on + strand, within Pf6N2E2_4759 at 5498.709 kb on + strand, within Pf6N2E2_4759 at 5498.709 kb on + strand, within Pf6N2E2_4759 at 5498.709 kb on + strand, within Pf6N2E2_4759 at 5498.709 kb on + strand, within Pf6N2E2_4759 at 5498.709 kb on + strand, within Pf6N2E2_4759 at 5498.710 kb on - strand, within Pf6N2E2_4759 at 5498.710 kb on - strand, within Pf6N2E2_4759 at 5498.710 kb on - strand, within Pf6N2E2_4759 at 5499.195 kb on + strand at 5499.196 kb on - strand at 5499.196 kb on - strand at 5499.356 kb on + strand at 5499.426 kb on - strand at 5499.513 kb on - strand, within Pf6N2E2_4761 at 5499.513 kb on - strand, within Pf6N2E2_4761 at 5499.692 kb on + strand, within Pf6N2E2_4761 at 5499.692 kb on + strand, within Pf6N2E2_4761 at 5499.692 kb on + strand, within Pf6N2E2_4761 at 5499.692 kb on + strand, within Pf6N2E2_4761 at 5499.693 kb on - strand, within Pf6N2E2_4761 at 5499.816 kb on - strand, within Pf6N2E2_4761 at 5499.872 kb on - strand, within Pf6N2E2_4761 at 5500.157 kb on + strand, within Pf6N2E2_4761 at 5500.157 kb on + strand, within Pf6N2E2_4761 at 5500.157 kb on + strand, within Pf6N2E2_4761 at 5500.157 kb on + strand, within Pf6N2E2_4761 at 5500.157 kb on + strand, within Pf6N2E2_4761 at 5500.158 kb on - strand, within Pf6N2E2_4761 at 5500.163 kb on + strand, within Pf6N2E2_4761 at 5500.163 kb on + strand, within Pf6N2E2_4761 at 5500.163 kb on + strand, within Pf6N2E2_4761 at 5500.163 kb on + strand, within Pf6N2E2_4761 at 5500.163 kb on + strand, within Pf6N2E2_4761 at 5500.163 kb on + strand, within Pf6N2E2_4761 at 5500.163 kb on + strand, within Pf6N2E2_4761 at 5500.164 kb on - strand, within Pf6N2E2_4761 at 5500.164 kb on - strand, within Pf6N2E2_4761 at 5500.164 kb on - strand, within Pf6N2E2_4761 at 5500.164 kb on - strand, within Pf6N2E2_4761 at 5500.164 kb on - strand, within Pf6N2E2_4761 at 5500.164 kb on - strand, within Pf6N2E2_4761 at 5500.164 kb on - strand, within Pf6N2E2_4761 at 5500.164 kb on - strand, within Pf6N2E2_4761 at 5500.164 kb on - strand, within Pf6N2E2_4761
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 5,497,365 + -0.5 5,497,365 + -0.6 5,497,365 + +1.1 5,497,365 + +0.4 5,497,366 - +1.4 5,497,366 - -0.7 5,497,366 - -0.8 5,497,366 - -0.3 5,497,821 + Pf6N2E2_4758 0.67 +0.3 5,497,822 - Pf6N2E2_4758 0.67 +0.3 5,497,822 - Pf6N2E2_4758 0.67 +0.1 5,497,966 + Pf6N2E2_4758 0.87 +0.7 5,497,966 + Pf6N2E2_4758 0.87 -0.6 5,497,966 + Pf6N2E2_4758 0.87 +0.9 5,497,967 - Pf6N2E2_4758 0.87 +2.1 5,497,967 - Pf6N2E2_4758 0.87 +1.7 5,497,967 - Pf6N2E2_4758 0.87 -2.4 5,497,967 - Pf6N2E2_4758 0.87 -1.0 5,498,076 + -0.5 5,498,076 + +1.3 5,498,076 + -1.7 5,498,076 + +1.3 5,498,076 + +0.6 5,498,077 - -2.2 5,498,077 - +0.3 5,498,077 - -1.6 5,498,080 + +0.5 5,498,080 + -4.0 5,498,080 + +1.4 5,498,080 + +0.5 5,498,081 - -2.5 5,498,140 + +0.4 5,498,140 + +0.5 5,498,140 + -4.2 5,498,141 - -1.8 5,498,141 - -0.3 5,498,141 - -3.8 5,498,141 - -1.8 5,498,141 - -4.2 5,498,141 - -2.9 5,498,141 - +0.4 5,498,349 + Pf6N2E2_4759 0.18 -2.0 5,498,349 + Pf6N2E2_4759 0.18 -2.4 5,498,349 + Pf6N2E2_4759 0.18 -0.9 5,498,349 + Pf6N2E2_4759 0.18 -2.6 5,498,349 + Pf6N2E2_4759 0.18 -0.3 5,498,350 - Pf6N2E2_4759 0.18 -0.3 5,498,350 - Pf6N2E2_4759 0.18 -1.8 5,498,350 - Pf6N2E2_4759 0.18 -0.8 5,498,350 - Pf6N2E2_4759 0.18 -1.7 5,498,350 - Pf6N2E2_4759 0.18 -0.9 5,498,351 - Pf6N2E2_4759 0.18 +0.2 5,498,370 + Pf6N2E2_4759 0.20 -3.4 5,498,370 + Pf6N2E2_4759 0.20 -3.7 5,498,370 + Pf6N2E2_4759 0.20 -0.6 5,498,370 + Pf6N2E2_4759 0.20 +0.1 5,498,370 + Pf6N2E2_4759 0.20 -1.9 5,498,371 - Pf6N2E2_4759 0.20 -0.9 5,498,371 - Pf6N2E2_4759 0.20 +0.3 5,498,371 - Pf6N2E2_4759 0.20 -2.5 5,498,371 - Pf6N2E2_4759 0.20 -3.0 5,498,508 + Pf6N2E2_4759 0.33 -0.5 5,498,508 + Pf6N2E2_4759 0.33 -1.4 5,498,508 + Pf6N2E2_4759 0.33 -1.1 5,498,508 + Pf6N2E2_4759 0.33 -0.9 5,498,508 + Pf6N2E2_4759 0.33 -3.4 5,498,508 + Pf6N2E2_4759 0.33 -0.9 5,498,508 + Pf6N2E2_4759 0.33 -2.5 5,498,508 + Pf6N2E2_4759 0.33 +0.1 5,498,508 + Pf6N2E2_4759 0.33 -1.3 5,498,508 + Pf6N2E2_4759 0.33 -0.6 5,498,508 + Pf6N2E2_4759 0.33 -1.0 5,498,508 + Pf6N2E2_4759 0.33 -1.5 5,498,508 + Pf6N2E2_4759 0.33 -0.6 5,498,509 - Pf6N2E2_4759 0.33 -1.0 5,498,509 - Pf6N2E2_4759 0.33 -1.6 5,498,509 - Pf6N2E2_4759 0.33 -2.3 5,498,619 + Pf6N2E2_4759 0.44 -3.0 5,498,619 + Pf6N2E2_4759 0.44 -1.4 5,498,620 - Pf6N2E2_4759 0.44 -0.8 5,498,622 + Pf6N2E2_4759 0.44 +0.8 5,498,622 + Pf6N2E2_4759 0.44 -0.9 5,498,622 + Pf6N2E2_4759 0.44 -0.5 5,498,622 + Pf6N2E2_4759 0.44 +0.1 5,498,622 + Pf6N2E2_4759 0.44 -0.7 5,498,622 + Pf6N2E2_4759 0.44 -0.8 5,498,622 + Pf6N2E2_4759 0.44 -3.0 5,498,622 + Pf6N2E2_4759 0.44 +0.8 5,498,622 + Pf6N2E2_4759 0.44 -1.8 5,498,622 + Pf6N2E2_4759 0.44 +0.7 5,498,622 + Pf6N2E2_4759 0.44 -3.6 5,498,622 + Pf6N2E2_4759 0.44 -0.6 5,498,623 - Pf6N2E2_4759 0.44 -1.0 5,498,623 - Pf6N2E2_4759 0.44 -1.8 5,498,623 - Pf6N2E2_4759 0.44 -0.3 5,498,623 - Pf6N2E2_4759 0.44 -1.9 5,498,623 - Pf6N2E2_4759 0.44 +0.3 5,498,623 - Pf6N2E2_4759 0.44 +1.5 5,498,623 - Pf6N2E2_4759 0.44 -1.4 5,498,630 + Pf6N2E2_4759 0.45 -3.7 5,498,630 + Pf6N2E2_4759 0.45 -1.9 5,498,631 - Pf6N2E2_4759 0.45 -2.8 5,498,631 - Pf6N2E2_4759 0.45 -0.1 5,498,631 - Pf6N2E2_4759 0.45 -1.7 5,498,656 - Pf6N2E2_4759 0.47 -3.2 5,498,656 - Pf6N2E2_4759 0.47 -0.7 5,498,683 - Pf6N2E2_4759 0.50 -0.4 5,498,683 - Pf6N2E2_4759 0.50 -2.9 5,498,709 + Pf6N2E2_4759 0.52 -0.9 5,498,709 + Pf6N2E2_4759 0.52 -1.6 5,498,709 + Pf6N2E2_4759 0.52 -3.2 5,498,709 + Pf6N2E2_4759 0.52 -1.8 5,498,709 + Pf6N2E2_4759 0.52 -0.9 5,498,709 + Pf6N2E2_4759 0.52 -1.2 5,498,710 - Pf6N2E2_4759 0.52 -3.6 5,498,710 - Pf6N2E2_4759 0.52 -0.1 5,498,710 - Pf6N2E2_4759 0.52 -1.8 5,499,195 + +0.4 5,499,196 - +1.1 5,499,196 - -1.6 5,499,356 + +0.7 5,499,426 - -3.0 5,499,513 - Pf6N2E2_4761 0.12 -1.0 5,499,513 - Pf6N2E2_4761 0.12 +0.6 5,499,692 + Pf6N2E2_4761 0.27 -2.7 5,499,692 + Pf6N2E2_4761 0.27 -2.1 5,499,692 + Pf6N2E2_4761 0.27 -1.4 5,499,692 + Pf6N2E2_4761 0.27 -0.2 5,499,693 - Pf6N2E2_4761 0.27 -2.6 5,499,816 - Pf6N2E2_4761 0.37 -3.5 5,499,872 - Pf6N2E2_4761 0.42 -3.2 5,500,157 + Pf6N2E2_4761 0.66 -3.4 5,500,157 + Pf6N2E2_4761 0.66 -1.1 5,500,157 + Pf6N2E2_4761 0.66 -2.1 5,500,157 + Pf6N2E2_4761 0.66 -0.2 5,500,157 + Pf6N2E2_4761 0.66 -3.0 5,500,158 - Pf6N2E2_4761 0.66 -1.1 5,500,163 + Pf6N2E2_4761 0.67 -3.8 5,500,163 + Pf6N2E2_4761 0.67 -3.6 5,500,163 + Pf6N2E2_4761 0.67 +1.4 5,500,163 + Pf6N2E2_4761 0.67 -2.5 5,500,163 + Pf6N2E2_4761 0.67 -2.3 5,500,163 + Pf6N2E2_4761 0.67 -2.4 5,500,163 + Pf6N2E2_4761 0.67 +0.0 5,500,164 - Pf6N2E2_4761 0.67 -1.9 5,500,164 - Pf6N2E2_4761 0.67 -1.5 5,500,164 - Pf6N2E2_4761 0.67 -0.9 5,500,164 - Pf6N2E2_4761 0.67 -1.8 5,500,164 - Pf6N2E2_4761 0.67 -2.9 5,500,164 - Pf6N2E2_4761 0.67 -0.9 5,500,164 - Pf6N2E2_4761 0.67 -1.3 5,500,164 - Pf6N2E2_4761 0.67 -3.9 5,500,164 - Pf6N2E2_4761 0.67 -2.5
Or see this region's nucleotide sequence