Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4759

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4757 and Pf6N2E2_4758 are separated by 58 nucleotidesPf6N2E2_4758 and Pf6N2E2_4759 are separated by 91 nucleotidesPf6N2E2_4759 and Pf6N2E2_4760 overlap by 19 nucleotidesPf6N2E2_4760 and Pf6N2E2_4761 are separated by 36 nucleotides Pf6N2E2_4757 - DNA-binding domain of ModE / Molybdate-binding domain of ModE, at 5,496,502 to 5,497,266 _4757 Pf6N2E2_4758 - Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy, at 5,497,325 to 5,498,065 _4758 Pf6N2E2_4759 - Biotin synthase (EC 2.8.1.6), at 5,498,157 to 5,499,212 _4759 Pf6N2E2_4760 - hypothetical protein, at 5,499,194 to 5,499,337 _4760 Pf6N2E2_4761 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 5,499,374 to 5,500,552 _4761 Position (kb) 5498 5499 5500Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5497.365 kb on + strandat 5497.365 kb on + strandat 5497.365 kb on + strandat 5497.365 kb on + strandat 5497.366 kb on - strandat 5497.366 kb on - strandat 5497.366 kb on - strandat 5497.366 kb on - strandat 5497.821 kb on + strand, within Pf6N2E2_4758at 5497.822 kb on - strand, within Pf6N2E2_4758at 5497.822 kb on - strand, within Pf6N2E2_4758at 5497.966 kb on + strand, within Pf6N2E2_4758at 5497.966 kb on + strand, within Pf6N2E2_4758at 5497.966 kb on + strand, within Pf6N2E2_4758at 5497.967 kb on - strand, within Pf6N2E2_4758at 5497.967 kb on - strand, within Pf6N2E2_4758at 5497.967 kb on - strand, within Pf6N2E2_4758at 5497.967 kb on - strand, within Pf6N2E2_4758at 5498.076 kb on + strandat 5498.076 kb on + strandat 5498.076 kb on + strandat 5498.076 kb on + strandat 5498.076 kb on + strandat 5498.077 kb on - strandat 5498.077 kb on - strandat 5498.077 kb on - strandat 5498.080 kb on + strandat 5498.080 kb on + strandat 5498.080 kb on + strandat 5498.080 kb on + strandat 5498.081 kb on - strandat 5498.140 kb on + strandat 5498.140 kb on + strandat 5498.140 kb on + strandat 5498.141 kb on - strandat 5498.141 kb on - strandat 5498.141 kb on - strandat 5498.141 kb on - strandat 5498.141 kb on - strandat 5498.141 kb on - strandat 5498.141 kb on - strandat 5498.349 kb on + strand, within Pf6N2E2_4759at 5498.349 kb on + strand, within Pf6N2E2_4759at 5498.349 kb on + strand, within Pf6N2E2_4759at 5498.349 kb on + strand, within Pf6N2E2_4759at 5498.349 kb on + strand, within Pf6N2E2_4759at 5498.350 kb on - strand, within Pf6N2E2_4759at 5498.350 kb on - strand, within Pf6N2E2_4759at 5498.350 kb on - strand, within Pf6N2E2_4759at 5498.350 kb on - strand, within Pf6N2E2_4759at 5498.350 kb on - strand, within Pf6N2E2_4759at 5498.351 kb on - strand, within Pf6N2E2_4759at 5498.370 kb on + strand, within Pf6N2E2_4759at 5498.370 kb on + strand, within Pf6N2E2_4759at 5498.370 kb on + strand, within Pf6N2E2_4759at 5498.370 kb on + strand, within Pf6N2E2_4759at 5498.370 kb on + strand, within Pf6N2E2_4759at 5498.371 kb on - strand, within Pf6N2E2_4759at 5498.371 kb on - strand, within Pf6N2E2_4759at 5498.371 kb on - strand, within Pf6N2E2_4759at 5498.371 kb on - strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.508 kb on + strand, within Pf6N2E2_4759at 5498.509 kb on - strand, within Pf6N2E2_4759at 5498.509 kb on - strand, within Pf6N2E2_4759at 5498.509 kb on - strand, within Pf6N2E2_4759at 5498.619 kb on + strand, within Pf6N2E2_4759at 5498.619 kb on + strand, within Pf6N2E2_4759at 5498.620 kb on - strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.622 kb on + strand, within Pf6N2E2_4759at 5498.623 kb on - strand, within Pf6N2E2_4759at 5498.623 kb on - strand, within Pf6N2E2_4759at 5498.623 kb on - strand, within Pf6N2E2_4759at 5498.623 kb on - strand, within Pf6N2E2_4759at 5498.623 kb on - strand, within Pf6N2E2_4759at 5498.623 kb on - strand, within Pf6N2E2_4759at 5498.623 kb on - strand, within Pf6N2E2_4759at 5498.630 kb on + strand, within Pf6N2E2_4759at 5498.630 kb on + strand, within Pf6N2E2_4759at 5498.631 kb on - strand, within Pf6N2E2_4759at 5498.631 kb on - strand, within Pf6N2E2_4759at 5498.631 kb on - strand, within Pf6N2E2_4759at 5498.656 kb on - strand, within Pf6N2E2_4759at 5498.656 kb on - strand, within Pf6N2E2_4759at 5498.683 kb on - strand, within Pf6N2E2_4759at 5498.683 kb on - strand, within Pf6N2E2_4759at 5498.709 kb on + strand, within Pf6N2E2_4759at 5498.709 kb on + strand, within Pf6N2E2_4759at 5498.709 kb on + strand, within Pf6N2E2_4759at 5498.709 kb on + strand, within Pf6N2E2_4759at 5498.709 kb on + strand, within Pf6N2E2_4759at 5498.709 kb on + strand, within Pf6N2E2_4759at 5498.710 kb on - strand, within Pf6N2E2_4759at 5498.710 kb on - strand, within Pf6N2E2_4759at 5498.710 kb on - strand, within Pf6N2E2_4759at 5499.195 kb on + strandat 5499.196 kb on - strandat 5499.196 kb on - strandat 5499.356 kb on + strandat 5499.426 kb on - strandat 5499.513 kb on - strand, within Pf6N2E2_4761at 5499.513 kb on - strand, within Pf6N2E2_4761at 5499.692 kb on + strand, within Pf6N2E2_4761at 5499.692 kb on + strand, within Pf6N2E2_4761at 5499.692 kb on + strand, within Pf6N2E2_4761at 5499.692 kb on + strand, within Pf6N2E2_4761at 5499.693 kb on - strand, within Pf6N2E2_4761at 5499.816 kb on - strand, within Pf6N2E2_4761at 5499.872 kb on - strand, within Pf6N2E2_4761at 5500.157 kb on + strand, within Pf6N2E2_4761at 5500.157 kb on + strand, within Pf6N2E2_4761at 5500.157 kb on + strand, within Pf6N2E2_4761at 5500.157 kb on + strand, within Pf6N2E2_4761at 5500.157 kb on + strand, within Pf6N2E2_4761at 5500.158 kb on - strand, within Pf6N2E2_4761at 5500.163 kb on + strand, within Pf6N2E2_4761at 5500.163 kb on + strand, within Pf6N2E2_4761at 5500.163 kb on + strand, within Pf6N2E2_4761at 5500.163 kb on + strand, within Pf6N2E2_4761at 5500.163 kb on + strand, within Pf6N2E2_4761at 5500.163 kb on + strand, within Pf6N2E2_4761at 5500.163 kb on + strand, within Pf6N2E2_4761at 5500.164 kb on - strand, within Pf6N2E2_4761at 5500.164 kb on - strand, within Pf6N2E2_4761at 5500.164 kb on - strand, within Pf6N2E2_4761at 5500.164 kb on - strand, within Pf6N2E2_4761at 5500.164 kb on - strand, within Pf6N2E2_4761at 5500.164 kb on - strand, within Pf6N2E2_4761at 5500.164 kb on - strand, within Pf6N2E2_4761at 5500.164 kb on - strand, within Pf6N2E2_4761at 5500.164 kb on - strand, within Pf6N2E2_4761

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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5,497,365 + -0.5
5,497,365 + -0.6
5,497,365 + +1.1
5,497,365 + +0.4
5,497,366 - +1.4
5,497,366 - -0.7
5,497,366 - -0.8
5,497,366 - -0.3
5,497,821 + Pf6N2E2_4758 0.67 +0.3
5,497,822 - Pf6N2E2_4758 0.67 +0.3
5,497,822 - Pf6N2E2_4758 0.67 +0.1
5,497,966 + Pf6N2E2_4758 0.87 +0.7
5,497,966 + Pf6N2E2_4758 0.87 -0.6
5,497,966 + Pf6N2E2_4758 0.87 +0.9
5,497,967 - Pf6N2E2_4758 0.87 +2.1
5,497,967 - Pf6N2E2_4758 0.87 +1.7
5,497,967 - Pf6N2E2_4758 0.87 -2.4
5,497,967 - Pf6N2E2_4758 0.87 -1.0
5,498,076 + -0.5
5,498,076 + +1.3
5,498,076 + -1.7
5,498,076 + +1.3
5,498,076 + +0.6
5,498,077 - -2.2
5,498,077 - +0.3
5,498,077 - -1.6
5,498,080 + +0.5
5,498,080 + -4.0
5,498,080 + +1.4
5,498,080 + +0.5
5,498,081 - -2.5
5,498,140 + +0.4
5,498,140 + +0.5
5,498,140 + -4.2
5,498,141 - -1.8
5,498,141 - -0.3
5,498,141 - -3.8
5,498,141 - -1.8
5,498,141 - -4.2
5,498,141 - -2.9
5,498,141 - +0.4
5,498,349 + Pf6N2E2_4759 0.18 -2.0
5,498,349 + Pf6N2E2_4759 0.18 -2.4
5,498,349 + Pf6N2E2_4759 0.18 -0.9
5,498,349 + Pf6N2E2_4759 0.18 -2.6
5,498,349 + Pf6N2E2_4759 0.18 -0.3
5,498,350 - Pf6N2E2_4759 0.18 -0.3
5,498,350 - Pf6N2E2_4759 0.18 -1.8
5,498,350 - Pf6N2E2_4759 0.18 -0.8
5,498,350 - Pf6N2E2_4759 0.18 -1.7
5,498,350 - Pf6N2E2_4759 0.18 -0.9
5,498,351 - Pf6N2E2_4759 0.18 +0.2
5,498,370 + Pf6N2E2_4759 0.20 -3.4
5,498,370 + Pf6N2E2_4759 0.20 -3.7
5,498,370 + Pf6N2E2_4759 0.20 -0.6
5,498,370 + Pf6N2E2_4759 0.20 +0.1
5,498,370 + Pf6N2E2_4759 0.20 -1.9
5,498,371 - Pf6N2E2_4759 0.20 -0.9
5,498,371 - Pf6N2E2_4759 0.20 +0.3
5,498,371 - Pf6N2E2_4759 0.20 -2.5
5,498,371 - Pf6N2E2_4759 0.20 -3.0
5,498,508 + Pf6N2E2_4759 0.33 -0.5
5,498,508 + Pf6N2E2_4759 0.33 -1.4
5,498,508 + Pf6N2E2_4759 0.33 -1.1
5,498,508 + Pf6N2E2_4759 0.33 -0.9
5,498,508 + Pf6N2E2_4759 0.33 -3.4
5,498,508 + Pf6N2E2_4759 0.33 -0.9
5,498,508 + Pf6N2E2_4759 0.33 -2.5
5,498,508 + Pf6N2E2_4759 0.33 +0.1
5,498,508 + Pf6N2E2_4759 0.33 -1.3
5,498,508 + Pf6N2E2_4759 0.33 -0.6
5,498,508 + Pf6N2E2_4759 0.33 -1.0
5,498,508 + Pf6N2E2_4759 0.33 -1.5
5,498,508 + Pf6N2E2_4759 0.33 -0.6
5,498,509 - Pf6N2E2_4759 0.33 -1.0
5,498,509 - Pf6N2E2_4759 0.33 -1.6
5,498,509 - Pf6N2E2_4759 0.33 -2.3
5,498,619 + Pf6N2E2_4759 0.44 -3.0
5,498,619 + Pf6N2E2_4759 0.44 -1.4
5,498,620 - Pf6N2E2_4759 0.44 -0.8
5,498,622 + Pf6N2E2_4759 0.44 +0.8
5,498,622 + Pf6N2E2_4759 0.44 -0.9
5,498,622 + Pf6N2E2_4759 0.44 -0.5
5,498,622 + Pf6N2E2_4759 0.44 +0.1
5,498,622 + Pf6N2E2_4759 0.44 -0.7
5,498,622 + Pf6N2E2_4759 0.44 -0.8
5,498,622 + Pf6N2E2_4759 0.44 -3.0
5,498,622 + Pf6N2E2_4759 0.44 +0.8
5,498,622 + Pf6N2E2_4759 0.44 -1.8
5,498,622 + Pf6N2E2_4759 0.44 +0.7
5,498,622 + Pf6N2E2_4759 0.44 -3.6
5,498,622 + Pf6N2E2_4759 0.44 -0.6
5,498,623 - Pf6N2E2_4759 0.44 -1.0
5,498,623 - Pf6N2E2_4759 0.44 -1.8
5,498,623 - Pf6N2E2_4759 0.44 -0.3
5,498,623 - Pf6N2E2_4759 0.44 -1.9
5,498,623 - Pf6N2E2_4759 0.44 +0.3
5,498,623 - Pf6N2E2_4759 0.44 +1.5
5,498,623 - Pf6N2E2_4759 0.44 -1.4
5,498,630 + Pf6N2E2_4759 0.45 -3.7
5,498,630 + Pf6N2E2_4759 0.45 -1.9
5,498,631 - Pf6N2E2_4759 0.45 -2.8
5,498,631 - Pf6N2E2_4759 0.45 -0.1
5,498,631 - Pf6N2E2_4759 0.45 -1.7
5,498,656 - Pf6N2E2_4759 0.47 -3.2
5,498,656 - Pf6N2E2_4759 0.47 -0.7
5,498,683 - Pf6N2E2_4759 0.50 -0.4
5,498,683 - Pf6N2E2_4759 0.50 -2.9
5,498,709 + Pf6N2E2_4759 0.52 -0.9
5,498,709 + Pf6N2E2_4759 0.52 -1.6
5,498,709 + Pf6N2E2_4759 0.52 -3.2
5,498,709 + Pf6N2E2_4759 0.52 -1.8
5,498,709 + Pf6N2E2_4759 0.52 -0.9
5,498,709 + Pf6N2E2_4759 0.52 -1.2
5,498,710 - Pf6N2E2_4759 0.52 -3.6
5,498,710 - Pf6N2E2_4759 0.52 -0.1
5,498,710 - Pf6N2E2_4759 0.52 -1.8
5,499,195 + +0.4
5,499,196 - +1.1
5,499,196 - -1.6
5,499,356 + +0.7
5,499,426 - -3.0
5,499,513 - Pf6N2E2_4761 0.12 -1.0
5,499,513 - Pf6N2E2_4761 0.12 +0.6
5,499,692 + Pf6N2E2_4761 0.27 -2.7
5,499,692 + Pf6N2E2_4761 0.27 -2.1
5,499,692 + Pf6N2E2_4761 0.27 -1.4
5,499,692 + Pf6N2E2_4761 0.27 -0.2
5,499,693 - Pf6N2E2_4761 0.27 -2.6
5,499,816 - Pf6N2E2_4761 0.37 -3.5
5,499,872 - Pf6N2E2_4761 0.42 -3.2
5,500,157 + Pf6N2E2_4761 0.66 -3.4
5,500,157 + Pf6N2E2_4761 0.66 -1.1
5,500,157 + Pf6N2E2_4761 0.66 -2.1
5,500,157 + Pf6N2E2_4761 0.66 -0.2
5,500,157 + Pf6N2E2_4761 0.66 -3.0
5,500,158 - Pf6N2E2_4761 0.66 -1.1
5,500,163 + Pf6N2E2_4761 0.67 -3.8
5,500,163 + Pf6N2E2_4761 0.67 -3.6
5,500,163 + Pf6N2E2_4761 0.67 +1.4
5,500,163 + Pf6N2E2_4761 0.67 -2.5
5,500,163 + Pf6N2E2_4761 0.67 -2.3
5,500,163 + Pf6N2E2_4761 0.67 -2.4
5,500,163 + Pf6N2E2_4761 0.67 +0.0
5,500,164 - Pf6N2E2_4761 0.67 -1.9
5,500,164 - Pf6N2E2_4761 0.67 -1.5
5,500,164 - Pf6N2E2_4761 0.67 -0.9
5,500,164 - Pf6N2E2_4761 0.67 -1.8
5,500,164 - Pf6N2E2_4761 0.67 -2.9
5,500,164 - Pf6N2E2_4761 0.67 -0.9
5,500,164 - Pf6N2E2_4761 0.67 -1.3
5,500,164 - Pf6N2E2_4761 0.67 -3.9
5,500,164 - Pf6N2E2_4761 0.67 -2.5

Or see this region's nucleotide sequence