Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4636 and Pf6N2E2_4637 are separated by 106 nucleotides Pf6N2E2_4637 and Pf6N2E2_4638 are separated by 11 nucleotides Pf6N2E2_4638 and Pf6N2E2_4639 are separated by 167 nucleotides
Pf6N2E2_4636 - periplasmic binding protein, putative, at 5,366,863 to 5,367,588
_4636
Pf6N2E2_4637 - hypothetical protein, at 5,367,695 to 5,367,838
_4637
Pf6N2E2_4638 - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20), at 5,367,850 to 5,368,695
_4638
Pf6N2E2_4639 - Adenosylhomocysteinase (EC 3.3.1.1), at 5,368,863 to 5,370,272
_4639
Position (kb)
5367
5368
5369 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5366.859 kb on + strand at 5366.859 kb on + strand at 5366.860 kb on - strand at 5366.936 kb on + strand, within Pf6N2E2_4636 at 5367.023 kb on + strand, within Pf6N2E2_4636 at 5367.023 kb on + strand, within Pf6N2E2_4636 at 5367.222 kb on - strand, within Pf6N2E2_4636 at 5367.303 kb on - strand, within Pf6N2E2_4636 at 5367.319 kb on + strand, within Pf6N2E2_4636 at 5367.319 kb on + strand, within Pf6N2E2_4636 at 5367.319 kb on + strand, within Pf6N2E2_4636 at 5367.320 kb on - strand, within Pf6N2E2_4636 at 5367.320 kb on - strand, within Pf6N2E2_4636 at 5367.320 kb on - strand, within Pf6N2E2_4636 at 5367.320 kb on - strand, within Pf6N2E2_4636 at 5367.497 kb on + strand, within Pf6N2E2_4636 at 5367.497 kb on + strand, within Pf6N2E2_4636 at 5367.498 kb on - strand, within Pf6N2E2_4636 at 5367.498 kb on - strand, within Pf6N2E2_4636 at 5367.530 kb on + strand at 5367.531 kb on - strand at 5367.531 kb on - strand at 5367.536 kb on + strand at 5367.537 kb on - strand at 5367.537 kb on - strand at 5367.537 kb on - strand at 5367.537 kb on - strand at 5367.670 kb on + strand at 5367.670 kb on + strand at 5367.670 kb on + strand at 5367.671 kb on - strand at 5367.671 kb on - strand at 5367.671 kb on - strand at 5367.671 kb on - strand at 5367.674 kb on + strand at 5367.674 kb on + strand at 5367.674 kb on + strand at 5367.674 kb on + strand at 5367.675 kb on - strand at 5367.675 kb on - strand at 5367.675 kb on - strand at 5367.675 kb on - strand at 5367.696 kb on + strand at 5367.696 kb on + strand at 5367.697 kb on - strand at 5367.707 kb on + strand at 5367.708 kb on - strand at 5367.708 kb on - strand at 5367.833 kb on + strand at 5367.833 kb on + strand at 5367.834 kb on - strand at 5367.842 kb on - strand at 5367.910 kb on - strand at 5367.911 kb on + strand at 5367.912 kb on - strand at 5367.912 kb on - strand at 5368.010 kb on + strand, within Pf6N2E2_4638 at 5368.085 kb on + strand, within Pf6N2E2_4638 at 5368.086 kb on - strand, within Pf6N2E2_4638 at 5368.086 kb on - strand, within Pf6N2E2_4638 at 5368.163 kb on + strand, within Pf6N2E2_4638 at 5368.163 kb on + strand, within Pf6N2E2_4638 at 5368.163 kb on + strand, within Pf6N2E2_4638 at 5368.164 kb on - strand, within Pf6N2E2_4638 at 5368.164 kb on - strand, within Pf6N2E2_4638 at 5368.571 kb on + strand, within Pf6N2E2_4638 at 5368.571 kb on + strand, within Pf6N2E2_4638 at 5368.571 kb on + strand, within Pf6N2E2_4638 at 5368.599 kb on - strand, within Pf6N2E2_4638 at 5368.599 kb on - strand, within Pf6N2E2_4638 at 5368.677 kb on - strand at 5368.701 kb on + strand at 5368.702 kb on - strand at 5368.718 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 5,366,859 + -1.0 5,366,859 + +1.2 5,366,860 - -0.1 5,366,936 + Pf6N2E2_4636 0.10 -2.4 5,367,023 + Pf6N2E2_4636 0.22 -1.0 5,367,023 + Pf6N2E2_4636 0.22 +0.9 5,367,222 - Pf6N2E2_4636 0.49 -0.4 5,367,303 - Pf6N2E2_4636 0.61 -0.1 5,367,319 + Pf6N2E2_4636 0.63 +1.1 5,367,319 + Pf6N2E2_4636 0.63 +2.0 5,367,319 + Pf6N2E2_4636 0.63 -1.2 5,367,320 - Pf6N2E2_4636 0.63 -1.7 5,367,320 - Pf6N2E2_4636 0.63 -0.2 5,367,320 - Pf6N2E2_4636 0.63 -1.7 5,367,320 - Pf6N2E2_4636 0.63 -0.5 5,367,497 + Pf6N2E2_4636 0.87 -0.7 5,367,497 + Pf6N2E2_4636 0.87 -1.0 5,367,498 - Pf6N2E2_4636 0.87 -2.0 5,367,498 - Pf6N2E2_4636 0.87 -2.3 5,367,530 + -0.7 5,367,531 - +2.0 5,367,531 - -3.3 5,367,536 + -3.3 5,367,537 - -1.0 5,367,537 - +0.1 5,367,537 - -2.2 5,367,537 - -0.7 5,367,670 + -0.1 5,367,670 + +0.3 5,367,670 + +0.7 5,367,671 - -1.5 5,367,671 - +1.1 5,367,671 - -3.6 5,367,671 - -0.5 5,367,674 + +0.2 5,367,674 + -1.7 5,367,674 + -0.1 5,367,674 + -1.0 5,367,675 - +1.1 5,367,675 - -1.6 5,367,675 - -0.2 5,367,675 - -0.0 5,367,696 + +0.4 5,367,696 + -0.9 5,367,697 - +0.4 5,367,707 + -1.3 5,367,708 - +1.6 5,367,708 - +1.4 5,367,833 + +0.4 5,367,833 + -1.1 5,367,834 - +2.2 5,367,842 - -0.5 5,367,910 - -2.8 5,367,911 + -1.9 5,367,912 - -1.9 5,367,912 - +1.5 5,368,010 + Pf6N2E2_4638 0.19 -2.4 5,368,085 + Pf6N2E2_4638 0.28 +0.9 5,368,086 - Pf6N2E2_4638 0.28 -0.5 5,368,086 - Pf6N2E2_4638 0.28 -2.3 5,368,163 + Pf6N2E2_4638 0.37 -1.1 5,368,163 + Pf6N2E2_4638 0.37 +0.1 5,368,163 + Pf6N2E2_4638 0.37 +0.5 5,368,164 - Pf6N2E2_4638 0.37 -0.9 5,368,164 - Pf6N2E2_4638 0.37 -0.1 5,368,571 + Pf6N2E2_4638 0.85 -0.1 5,368,571 + Pf6N2E2_4638 0.85 +0.5 5,368,571 + Pf6N2E2_4638 0.85 -0.5 5,368,599 - Pf6N2E2_4638 0.89 -1.9 5,368,599 - Pf6N2E2_4638 0.89 +0.5 5,368,677 - -2.8 5,368,701 + -1.5 5,368,702 - +1.1 5,368,718 - +1.2
Or see this region's nucleotide sequence