Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4372

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4370 and Pf6N2E2_4371 are separated by 44 nucleotidesPf6N2E2_4371 and Pf6N2E2_4372 are separated by 542 nucleotidesPf6N2E2_4372 and Pf6N2E2_4373 are separated by 53 nucleotidesPf6N2E2_4373 and Pf6N2E2_4374 are separated by 27 nucleotides Pf6N2E2_4370 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 5,098,965 to 5,099,609 _4370 Pf6N2E2_4371 - hypothetical protein, at 5,099,654 to 5,099,968 _4371 Pf6N2E2_4372 - FIG00460773: hypothetical protein, at 5,100,511 to 5,101,755 _4372 Pf6N2E2_4373 - Acetylglutamate kinase (EC 2.7.2.8), at 5,101,809 to 5,102,714 _4373 Pf6N2E2_4374 - Phosphomannomutase (EC 5.4.2.8) / Phosphoglucomutase (EC 5.4.2.2), at 5,102,742 to 5,104,139 _4374 Position (kb) 5100 5101 5102Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5099.587 kb on - strandat 5099.641 kb on + strandat 5099.641 kb on + strandat 5099.681 kb on + strandat 5099.681 kb on + strandat 5099.681 kb on + strandat 5099.682 kb on - strandat 5099.769 kb on - strand, within Pf6N2E2_4371at 5099.785 kb on - strand, within Pf6N2E2_4371at 5099.896 kb on - strand, within Pf6N2E2_4371at 5099.899 kb on + strand, within Pf6N2E2_4371at 5099.899 kb on + strand, within Pf6N2E2_4371at 5099.899 kb on + strand, within Pf6N2E2_4371at 5099.900 kb on - strand, within Pf6N2E2_4371at 5099.910 kb on + strand, within Pf6N2E2_4371at 5099.910 kb on + strand, within Pf6N2E2_4371at 5099.910 kb on + strand, within Pf6N2E2_4371at 5099.910 kb on + strand, within Pf6N2E2_4371at 5099.910 kb on + strand, within Pf6N2E2_4371at 5099.911 kb on - strand, within Pf6N2E2_4371at 5099.911 kb on - strand, within Pf6N2E2_4371at 5099.911 kb on - strand, within Pf6N2E2_4371at 5099.911 kb on - strand, within Pf6N2E2_4371at 5099.911 kb on - strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.913 kb on + strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.914 kb on - strand, within Pf6N2E2_4371at 5099.938 kb on + strandat 5099.938 kb on + strandat 5099.938 kb on + strandat 5099.938 kb on + strandat 5099.939 kb on - strandat 5099.939 kb on - strandat 5099.939 kb on - strandat 5099.939 kb on - strandat 5099.939 kb on - strandat 5099.939 kb on - strandat 5099.939 kb on - strandat 5099.939 kb on - strandat 5099.939 kb on - strandat 5099.939 kb on - strandat 5099.951 kb on - strandat 5099.959 kb on - strandat 5099.987 kb on - strandat 5100.057 kb on + strandat 5100.058 kb on - strandat 5100.116 kb on - strandat 5100.124 kb on + strandat 5100.125 kb on - strandat 5100.176 kb on + strandat 5100.176 kb on + strandat 5100.177 kb on - strandat 5100.230 kb on + strandat 5100.230 kb on + strandat 5100.230 kb on + strandat 5100.231 kb on - strandat 5100.231 kb on - strandat 5100.231 kb on - strandat 5100.231 kb on - strandat 5100.231 kb on - strandat 5100.231 kb on - strandat 5100.249 kb on + strandat 5100.249 kb on + strandat 5100.250 kb on - strandat 5100.314 kb on + strandat 5100.314 kb on + strandat 5100.314 kb on + strandat 5100.337 kb on + strandat 5100.338 kb on - strandat 5100.338 kb on - strandat 5100.358 kb on + strandat 5100.358 kb on + strandat 5100.359 kb on - strandat 5100.467 kb on - strandat 5100.467 kb on - strandat 5100.473 kb on - strandat 5100.473 kb on - strandat 5100.480 kb on + strandat 5100.480 kb on + strandat 5100.593 kb on + strandat 5100.715 kb on + strand, within Pf6N2E2_4372at 5100.755 kb on + strand, within Pf6N2E2_4372at 5100.761 kb on + strand, within Pf6N2E2_4372at 5100.782 kb on + strand, within Pf6N2E2_4372at 5100.886 kb on + strand, within Pf6N2E2_4372at 5100.896 kb on + strand, within Pf6N2E2_4372at 5100.896 kb on + strand, within Pf6N2E2_4372at 5100.896 kb on + strand, within Pf6N2E2_4372at 5101.161 kb on + strand, within Pf6N2E2_4372at 5101.161 kb on + strand, within Pf6N2E2_4372at 5101.161 kb on + strand, within Pf6N2E2_4372at 5101.161 kb on + strand, within Pf6N2E2_4372at 5101.247 kb on + strand, within Pf6N2E2_4372at 5101.295 kb on + strand, within Pf6N2E2_4372at 5101.343 kb on + strand, within Pf6N2E2_4372at 5101.343 kb on + strand, within Pf6N2E2_4372at 5101.343 kb on + strand, within Pf6N2E2_4372at 5101.398 kb on + strand, within Pf6N2E2_4372at 5101.425 kb on + strand, within Pf6N2E2_4372at 5101.466 kb on + strand, within Pf6N2E2_4372at 5101.672 kb on + strandat 5101.672 kb on + strandat 5101.779 kb on + strandat 5101.780 kb on - strandat 5101.780 kb on - strandat 5101.780 kb on - strandat 5101.810 kb on + strandat 5101.811 kb on - strandat 5101.811 kb on - strandat 5101.811 kb on - strandat 5101.839 kb on - strandat 5101.839 kb on - strandat 5101.839 kb on - strandat 5102.752 kb on - strandat 5102.752 kb on - strandat 5102.752 kb on - strandat 5102.752 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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5,099,587 - -2.6
5,099,641 + +0.1
5,099,641 + -1.2
5,099,681 + +0.1
5,099,681 + -3.6
5,099,681 + -2.6
5,099,682 - +0.4
5,099,769 - Pf6N2E2_4371 0.37 -0.8
5,099,785 - Pf6N2E2_4371 0.42 -0.5
5,099,896 - Pf6N2E2_4371 0.77 +0.2
5,099,899 + Pf6N2E2_4371 0.78 +1.0
5,099,899 + Pf6N2E2_4371 0.78 +1.2
5,099,899 + Pf6N2E2_4371 0.78 -3.1
5,099,900 - Pf6N2E2_4371 0.78 -0.1
5,099,910 + Pf6N2E2_4371 0.81 -0.5
5,099,910 + Pf6N2E2_4371 0.81 +0.7
5,099,910 + Pf6N2E2_4371 0.81 -1.4
5,099,910 + Pf6N2E2_4371 0.81 +1.2
5,099,910 + Pf6N2E2_4371 0.81 +0.4
5,099,911 - Pf6N2E2_4371 0.82 +0.9
5,099,911 - Pf6N2E2_4371 0.82 +0.1
5,099,911 - Pf6N2E2_4371 0.82 -1.6
5,099,911 - Pf6N2E2_4371 0.82 -1.8
5,099,911 - Pf6N2E2_4371 0.82 +0.3
5,099,913 + Pf6N2E2_4371 0.82 +1.1
5,099,913 + Pf6N2E2_4371 0.82 -2.5
5,099,913 + Pf6N2E2_4371 0.82 -2.1
5,099,913 + Pf6N2E2_4371 0.82 +0.2
5,099,913 + Pf6N2E2_4371 0.82 -0.1
5,099,913 + Pf6N2E2_4371 0.82 +0.7
5,099,913 + Pf6N2E2_4371 0.82 +0.1
5,099,913 + Pf6N2E2_4371 0.82 +0.8
5,099,913 + Pf6N2E2_4371 0.82 -0.0
5,099,913 + Pf6N2E2_4371 0.82 +0.2
5,099,913 + Pf6N2E2_4371 0.82 +1.1
5,099,913 + Pf6N2E2_4371 0.82 +1.0
5,099,914 - Pf6N2E2_4371 0.83 +2.0
5,099,914 - Pf6N2E2_4371 0.83 +0.3
5,099,914 - Pf6N2E2_4371 0.83 -1.9
5,099,914 - Pf6N2E2_4371 0.83 +0.4
5,099,914 - Pf6N2E2_4371 0.83 +0.9
5,099,914 - Pf6N2E2_4371 0.83 +1.9
5,099,914 - Pf6N2E2_4371 0.83 -0.4
5,099,914 - Pf6N2E2_4371 0.83 +3.4
5,099,914 - Pf6N2E2_4371 0.83 +0.9
5,099,914 - Pf6N2E2_4371 0.83 -2.6
5,099,938 + +0.4
5,099,938 + +0.2
5,099,938 + -2.4
5,099,938 + +0.5
5,099,939 - +0.4
5,099,939 - -1.4
5,099,939 - -0.9
5,099,939 - +0.1
5,099,939 - -0.1
5,099,939 - +0.1
5,099,939 - -0.2
5,099,939 - +0.8
5,099,939 - +0.1
5,099,939 - -1.0
5,099,951 - +0.4
5,099,959 - +0.5
5,099,987 - +0.6
5,100,057 + -1.6
5,100,058 - +0.2
5,100,116 - +0.1
5,100,124 + -1.1
5,100,125 - +0.2
5,100,176 + -0.3
5,100,176 + +0.8
5,100,177 - -0.2
5,100,230 + +1.8
5,100,230 + +1.1
5,100,230 + -0.1
5,100,231 - +0.4
5,100,231 - +1.1
5,100,231 - -1.9
5,100,231 - +0.5
5,100,231 - +0.4
5,100,231 - -2.6
5,100,249 + -0.7
5,100,249 + -1.0
5,100,250 - +1.3
5,100,314 + +1.0
5,100,314 + -0.0
5,100,314 + +0.0
5,100,337 + +0.4
5,100,338 - -0.4
5,100,338 - -0.9
5,100,358 + +0.3
5,100,358 + +0.8
5,100,359 - +0.4
5,100,467 - -1.6
5,100,467 - -0.7
5,100,473 - -1.0
5,100,473 - -1.6
5,100,480 + +0.3
5,100,480 + +0.1
5,100,593 + -1.7
5,100,715 + Pf6N2E2_4372 0.16 -2.2
5,100,755 + Pf6N2E2_4372 0.20 +0.0
5,100,761 + Pf6N2E2_4372 0.20 +0.4
5,100,782 + Pf6N2E2_4372 0.22 -2.8
5,100,886 + Pf6N2E2_4372 0.30 -0.7
5,100,896 + Pf6N2E2_4372 0.31 -0.4
5,100,896 + Pf6N2E2_4372 0.31 -2.2
5,100,896 + Pf6N2E2_4372 0.31 -2.5
5,101,161 + Pf6N2E2_4372 0.52 -0.7
5,101,161 + Pf6N2E2_4372 0.52 -3.0
5,101,161 + Pf6N2E2_4372 0.52 -2.6
5,101,161 + Pf6N2E2_4372 0.52 -2.7
5,101,247 + Pf6N2E2_4372 0.59 -1.0
5,101,295 + Pf6N2E2_4372 0.63 -1.4
5,101,343 + Pf6N2E2_4372 0.67 -2.6
5,101,343 + Pf6N2E2_4372 0.67 -0.5
5,101,343 + Pf6N2E2_4372 0.67 +1.0
5,101,398 + Pf6N2E2_4372 0.71 -1.2
5,101,425 + Pf6N2E2_4372 0.73 -2.6
5,101,466 + Pf6N2E2_4372 0.77 -2.5
5,101,672 + -3.2
5,101,672 + +0.3
5,101,779 + +0.1
5,101,780 - -0.4
5,101,780 - +1.1
5,101,780 - -1.6
5,101,810 + -1.3
5,101,811 - -0.6
5,101,811 - +1.5
5,101,811 - +0.3
5,101,839 - +1.1
5,101,839 - -1.2
5,101,839 - -1.0
5,102,752 - +0.6
5,102,752 - +1.5
5,102,752 - +0.4
5,102,752 - -1.3

Or see this region's nucleotide sequence