Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4276

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4274 and Pf6N2E2_4275 are separated by 69 nucleotidesPf6N2E2_4275 and Pf6N2E2_4276 are separated by 429 nucleotidesPf6N2E2_4276 and Pf6N2E2_4277 are separated by 424 nucleotides Pf6N2E2_4274 - Sensory box/GGDEF family protein, at 4,972,883 to 4,975,723 _4274 Pf6N2E2_4275 - hypothetical protein, at 4,975,793 to 4,976,107 _4275 Pf6N2E2_4276 - Phosphogluconate repressor HexR, RpiR family, at 4,976,537 to 4,977,403 _4276 Pf6N2E2_4277 - LysR family transcriptional regulator PA5437, at 4,977,828 to 4,978,769 _4277 Position (kb) 4976 4977 4978Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4975.652 kb on + strandat 4975.652 kb on + strandat 4975.653 kb on - strandat 4975.653 kb on - strandat 4975.740 kb on + strandat 4975.795 kb on - strandat 4975.798 kb on + strandat 4975.799 kb on - strandat 4975.802 kb on + strandat 4975.830 kb on - strand, within Pf6N2E2_4275at 4975.979 kb on + strand, within Pf6N2E2_4275at 4975.979 kb on + strand, within Pf6N2E2_4275at 4975.979 kb on + strand, within Pf6N2E2_4275at 4975.979 kb on + strand, within Pf6N2E2_4275at 4975.979 kb on + strand, within Pf6N2E2_4275at 4975.980 kb on - strand, within Pf6N2E2_4275at 4976.015 kb on - strand, within Pf6N2E2_4275at 4976.015 kb on - strand, within Pf6N2E2_4275at 4976.021 kb on + strand, within Pf6N2E2_4275at 4976.021 kb on + strand, within Pf6N2E2_4275at 4976.111 kb on - strandat 4976.114 kb on - strandat 4976.239 kb on + strandat 4976.248 kb on + strandat 4976.249 kb on - strandat 4976.261 kb on - strandat 4976.261 kb on - strandat 4976.261 kb on - strandat 4976.261 kb on - strandat 4976.262 kb on + strandat 4976.263 kb on - strandat 4976.263 kb on - strandat 4976.263 kb on - strandat 4976.263 kb on - strandat 4976.263 kb on - strandat 4976.398 kb on - strandat 4976.398 kb on - strandat 4976.398 kb on - strandat 4976.482 kb on + strandat 4976.482 kb on + strandat 4976.484 kb on + strandat 4976.488 kb on + strandat 4976.489 kb on - strandat 4976.499 kb on + strandat 4976.499 kb on + strandat 4976.499 kb on + strandat 4976.499 kb on + strandat 4976.499 kb on + strandat 4976.499 kb on + strandat 4976.500 kb on - strandat 4976.610 kb on + strandat 4976.610 kb on + strandat 4976.610 kb on + strandat 4976.611 kb on - strandat 4976.611 kb on - strandat 4976.611 kb on - strandat 4976.638 kb on + strand, within Pf6N2E2_4276at 4976.638 kb on + strand, within Pf6N2E2_4276at 4976.638 kb on + strand, within Pf6N2E2_4276at 4976.638 kb on + strand, within Pf6N2E2_4276at 4976.638 kb on + strand, within Pf6N2E2_4276at 4976.638 kb on + strand, within Pf6N2E2_4276at 4976.638 kb on + strand, within Pf6N2E2_4276at 4976.639 kb on - strand, within Pf6N2E2_4276at 4976.639 kb on - strand, within Pf6N2E2_4276at 4976.639 kb on - strand, within Pf6N2E2_4276at 4976.639 kb on - strand, within Pf6N2E2_4276at 4976.639 kb on - strand, within Pf6N2E2_4276at 4976.816 kb on + strand, within Pf6N2E2_4276at 4976.817 kb on - strand, within Pf6N2E2_4276at 4976.849 kb on - strand, within Pf6N2E2_4276at 4976.849 kb on - strand, within Pf6N2E2_4276at 4976.937 kb on - strand, within Pf6N2E2_4276at 4976.937 kb on - strand, within Pf6N2E2_4276at 4977.014 kb on + strand, within Pf6N2E2_4276at 4977.283 kb on - strand, within Pf6N2E2_4276at 4977.401 kb on + strandat 4977.401 kb on + strandat 4977.402 kb on - strandat 4977.402 kb on - strandat 4977.402 kb on - strandat 4977.402 kb on - strandat 4977.402 kb on - strandat 4977.402 kb on - strandat 4977.446 kb on + strandat 4977.446 kb on + strandat 4977.447 kb on - strandat 4977.447 kb on - strandat 4977.447 kb on - strandat 4977.490 kb on + strandat 4977.490 kb on + strandat 4977.491 kb on - strandat 4977.491 kb on - strandat 4977.491 kb on - strandat 4977.494 kb on + strandat 4977.494 kb on + strandat 4977.494 kb on + strandat 4977.494 kb on + strandat 4977.494 kb on + strandat 4977.494 kb on + strandat 4977.494 kb on + strandat 4977.494 kb on + strandat 4977.495 kb on - strandat 4977.495 kb on - strandat 4977.495 kb on - strandat 4977.495 kb on - strandat 4977.495 kb on - strandat 4977.495 kb on - strandat 4977.495 kb on - strandat 4977.495 kb on - strandat 4977.542 kb on + strandat 4977.543 kb on - strandat 4977.563 kb on + strandat 4977.564 kb on - strandat 4977.645 kb on - strandat 4977.657 kb on + strandat 4977.657 kb on + strandat 4977.657 kb on + strandat 4977.657 kb on + strandat 4977.657 kb on + strandat 4977.657 kb on + strandat 4977.657 kb on + strandat 4977.658 kb on - strandat 4977.658 kb on - strandat 4977.658 kb on - strandat 4977.658 kb on - strandat 4977.658 kb on - strandat 4977.658 kb on - strandat 4977.658 kb on - strandat 4977.658 kb on - strandat 4977.658 kb on - strandat 4977.690 kb on - strandat 4977.690 kb on - strandat 4977.690 kb on - strandat 4977.773 kb on + strandat 4977.774 kb on - strandat 4977.834 kb on - strandat 4978.200 kb on + strand, within Pf6N2E2_4277at 4978.205 kb on + strand, within Pf6N2E2_4277at 4978.205 kb on + strand, within Pf6N2E2_4277at 4978.205 kb on + strand, within Pf6N2E2_4277at 4978.206 kb on - strand, within Pf6N2E2_4277at 4978.206 kb on - strand, within Pf6N2E2_4277at 4978.206 kb on - strand, within Pf6N2E2_4277at 4978.206 kb on - strand, within Pf6N2E2_4277at 4978.206 kb on - strand, within Pf6N2E2_4277at 4978.206 kb on - strand, within Pf6N2E2_4277at 4978.206 kb on - strand, within Pf6N2E2_4277at 4978.207 kb on + strand, within Pf6N2E2_4277at 4978.207 kb on + strand, within Pf6N2E2_4277at 4978.208 kb on - strand, within Pf6N2E2_4277at 4978.208 kb on - strand, within Pf6N2E2_4277at 4978.208 kb on - strand, within Pf6N2E2_4277at 4978.208 kb on - strand, within Pf6N2E2_4277

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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4,975,652 + -0.6
4,975,652 + +0.5
4,975,653 - +0.3
4,975,653 - -0.1
4,975,740 + +0.5
4,975,795 - -1.3
4,975,798 + +1.7
4,975,799 - +0.2
4,975,802 + +1.1
4,975,830 - Pf6N2E2_4275 0.12 -0.4
4,975,979 + Pf6N2E2_4275 0.59 -0.2
4,975,979 + Pf6N2E2_4275 0.59 +3.5
4,975,979 + Pf6N2E2_4275 0.59 -0.2
4,975,979 + Pf6N2E2_4275 0.59 +0.8
4,975,979 + Pf6N2E2_4275 0.59 -1.4
4,975,980 - Pf6N2E2_4275 0.59 -0.8
4,976,015 - Pf6N2E2_4275 0.70 -0.7
4,976,015 - Pf6N2E2_4275 0.70 +1.2
4,976,021 + Pf6N2E2_4275 0.72 +1.6
4,976,021 + Pf6N2E2_4275 0.72 -0.1
4,976,111 - -3.3
4,976,114 - -0.7
4,976,239 + +0.9
4,976,248 + -2.9
4,976,249 - +0.7
4,976,261 - -2.6
4,976,261 - +0.2
4,976,261 - +1.2
4,976,261 - +0.7
4,976,262 + -1.0
4,976,263 - +1.4
4,976,263 - +1.0
4,976,263 - -0.5
4,976,263 - +0.5
4,976,263 - -0.8
4,976,398 - -1.4
4,976,398 - -1.4
4,976,398 - +0.2
4,976,482 + -0.6
4,976,482 + -0.1
4,976,484 + -0.7
4,976,488 + +1.4
4,976,489 - -1.1
4,976,499 + -0.3
4,976,499 + +0.9
4,976,499 + -0.8
4,976,499 + -1.2
4,976,499 + +0.3
4,976,499 + +1.5
4,976,500 - -1.1
4,976,610 + -2.1
4,976,610 + -2.5
4,976,610 + +0.3
4,976,611 - +0.7
4,976,611 - -2.5
4,976,611 - -0.1
4,976,638 + Pf6N2E2_4276 0.12 -2.3
4,976,638 + Pf6N2E2_4276 0.12 -2.8
4,976,638 + Pf6N2E2_4276 0.12 -0.7
4,976,638 + Pf6N2E2_4276 0.12 -3.4
4,976,638 + Pf6N2E2_4276 0.12 -1.5
4,976,638 + Pf6N2E2_4276 0.12 -2.7
4,976,638 + Pf6N2E2_4276 0.12 -1.1
4,976,639 - Pf6N2E2_4276 0.12 -2.5
4,976,639 - Pf6N2E2_4276 0.12 -1.7
4,976,639 - Pf6N2E2_4276 0.12 +0.8
4,976,639 - Pf6N2E2_4276 0.12 -0.4
4,976,639 - Pf6N2E2_4276 0.12 -2.7
4,976,816 + Pf6N2E2_4276 0.32 -0.7
4,976,817 - Pf6N2E2_4276 0.32 -0.7
4,976,849 - Pf6N2E2_4276 0.36 -0.7
4,976,849 - Pf6N2E2_4276 0.36 -1.8
4,976,937 - Pf6N2E2_4276 0.46 -2.1
4,976,937 - Pf6N2E2_4276 0.46 -2.4
4,977,014 + Pf6N2E2_4276 0.55 -2.4
4,977,283 - Pf6N2E2_4276 0.86 -2.9
4,977,401 + +1.2
4,977,401 + +1.5
4,977,402 - -2.7
4,977,402 - +0.2
4,977,402 - +0.5
4,977,402 - -2.1
4,977,402 - -0.1
4,977,402 - -0.3
4,977,446 + +0.7
4,977,446 + +1.0
4,977,447 - +0.4
4,977,447 - -0.7
4,977,447 - +0.6
4,977,490 + -1.1
4,977,490 + -2.2
4,977,491 - +0.1
4,977,491 - -0.2
4,977,491 - -4.1
4,977,494 + -0.4
4,977,494 + +1.3
4,977,494 + -2.8
4,977,494 + -0.4
4,977,494 + -1.9
4,977,494 + -1.9
4,977,494 + -1.7
4,977,494 + +0.2
4,977,495 - -0.7
4,977,495 - -0.7
4,977,495 - +0.8
4,977,495 - +1.3
4,977,495 - +0.1
4,977,495 - +1.4
4,977,495 - +0.8
4,977,495 - -1.0
4,977,542 + +0.3
4,977,543 - +1.1
4,977,563 + +1.1
4,977,564 - -1.3
4,977,645 - -0.1
4,977,657 + +1.4
4,977,657 + -1.1
4,977,657 + -2.2
4,977,657 + +1.6
4,977,657 + -1.4
4,977,657 + -1.6
4,977,657 + -3.7
4,977,658 - -2.8
4,977,658 - -0.9
4,977,658 - -0.1
4,977,658 - +0.7
4,977,658 - -1.7
4,977,658 - -0.7
4,977,658 - -0.7
4,977,658 - -0.7
4,977,658 - -0.8
4,977,690 - +0.1
4,977,690 - -4.5
4,977,690 - -3.7
4,977,773 + -1.5
4,977,774 - -2.1
4,977,834 - +0.8
4,978,200 + Pf6N2E2_4277 0.39 +0.1
4,978,205 + Pf6N2E2_4277 0.40 -2.1
4,978,205 + Pf6N2E2_4277 0.40 -1.9
4,978,205 + Pf6N2E2_4277 0.40 -1.4
4,978,206 - Pf6N2E2_4277 0.40 -1.7
4,978,206 - Pf6N2E2_4277 0.40 +1.5
4,978,206 - Pf6N2E2_4277 0.40 -3.8
4,978,206 - Pf6N2E2_4277 0.40 -2.0
4,978,206 - Pf6N2E2_4277 0.40 -1.1
4,978,206 - Pf6N2E2_4277 0.40 -3.7
4,978,206 - Pf6N2E2_4277 0.40 -3.9
4,978,207 + Pf6N2E2_4277 0.40 -2.9
4,978,207 + Pf6N2E2_4277 0.40 -0.5
4,978,208 - Pf6N2E2_4277 0.40 -2.8
4,978,208 - Pf6N2E2_4277 0.40 -0.6
4,978,208 - Pf6N2E2_4277 0.40 -2.6
4,978,208 - Pf6N2E2_4277 0.40 -4.0

Or see this region's nucleotide sequence