Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4274 and Pf6N2E2_4275 are separated by 69 nucleotides Pf6N2E2_4275 and Pf6N2E2_4276 are separated by 429 nucleotides Pf6N2E2_4276 and Pf6N2E2_4277 are separated by 424 nucleotides
Pf6N2E2_4274 - Sensory box/GGDEF family protein, at 4,972,883 to 4,975,723
_4274
Pf6N2E2_4275 - hypothetical protein, at 4,975,793 to 4,976,107
_4275
Pf6N2E2_4276 - Phosphogluconate repressor HexR, RpiR family, at 4,976,537 to 4,977,403
_4276
Pf6N2E2_4277 - LysR family transcriptional regulator PA5437, at 4,977,828 to 4,978,769
_4277
Position (kb)
4976
4977
4978 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4975.652 kb on + strand at 4975.652 kb on + strand at 4975.653 kb on - strand at 4975.653 kb on - strand at 4975.740 kb on + strand at 4975.795 kb on - strand at 4975.798 kb on + strand at 4975.799 kb on - strand at 4975.802 kb on + strand at 4975.830 kb on - strand, within Pf6N2E2_4275 at 4975.979 kb on + strand, within Pf6N2E2_4275 at 4975.979 kb on + strand, within Pf6N2E2_4275 at 4975.979 kb on + strand, within Pf6N2E2_4275 at 4975.979 kb on + strand, within Pf6N2E2_4275 at 4975.979 kb on + strand, within Pf6N2E2_4275 at 4975.980 kb on - strand, within Pf6N2E2_4275 at 4976.015 kb on - strand, within Pf6N2E2_4275 at 4976.015 kb on - strand, within Pf6N2E2_4275 at 4976.021 kb on + strand, within Pf6N2E2_4275 at 4976.021 kb on + strand, within Pf6N2E2_4275 at 4976.111 kb on - strand at 4976.114 kb on - strand at 4976.239 kb on + strand at 4976.248 kb on + strand at 4976.249 kb on - strand at 4976.261 kb on - strand at 4976.261 kb on - strand at 4976.261 kb on - strand at 4976.261 kb on - strand at 4976.262 kb on + strand at 4976.263 kb on - strand at 4976.263 kb on - strand at 4976.263 kb on - strand at 4976.263 kb on - strand at 4976.263 kb on - strand at 4976.398 kb on - strand at 4976.398 kb on - strand at 4976.398 kb on - strand at 4976.482 kb on + strand at 4976.482 kb on + strand at 4976.484 kb on + strand at 4976.488 kb on + strand at 4976.489 kb on - strand at 4976.499 kb on + strand at 4976.499 kb on + strand at 4976.499 kb on + strand at 4976.499 kb on + strand at 4976.499 kb on + strand at 4976.499 kb on + strand at 4976.500 kb on - strand at 4976.610 kb on + strand at 4976.610 kb on + strand at 4976.610 kb on + strand at 4976.611 kb on - strand at 4976.611 kb on - strand at 4976.611 kb on - strand at 4976.638 kb on + strand, within Pf6N2E2_4276 at 4976.638 kb on + strand, within Pf6N2E2_4276 at 4976.638 kb on + strand, within Pf6N2E2_4276 at 4976.638 kb on + strand, within Pf6N2E2_4276 at 4976.638 kb on + strand, within Pf6N2E2_4276 at 4976.638 kb on + strand, within Pf6N2E2_4276 at 4976.638 kb on + strand, within Pf6N2E2_4276 at 4976.639 kb on - strand, within Pf6N2E2_4276 at 4976.639 kb on - strand, within Pf6N2E2_4276 at 4976.639 kb on - strand, within Pf6N2E2_4276 at 4976.639 kb on - strand, within Pf6N2E2_4276 at 4976.639 kb on - strand, within Pf6N2E2_4276 at 4976.816 kb on + strand, within Pf6N2E2_4276 at 4976.817 kb on - strand, within Pf6N2E2_4276 at 4976.849 kb on - strand, within Pf6N2E2_4276 at 4976.849 kb on - strand, within Pf6N2E2_4276 at 4976.937 kb on - strand, within Pf6N2E2_4276 at 4976.937 kb on - strand, within Pf6N2E2_4276 at 4977.014 kb on + strand, within Pf6N2E2_4276 at 4977.283 kb on - strand, within Pf6N2E2_4276 at 4977.401 kb on + strand at 4977.401 kb on + strand at 4977.402 kb on - strand at 4977.402 kb on - strand at 4977.402 kb on - strand at 4977.402 kb on - strand at 4977.402 kb on - strand at 4977.402 kb on - strand at 4977.446 kb on + strand at 4977.446 kb on + strand at 4977.447 kb on - strand at 4977.447 kb on - strand at 4977.447 kb on - strand at 4977.490 kb on + strand at 4977.490 kb on + strand at 4977.491 kb on - strand at 4977.491 kb on - strand at 4977.491 kb on - strand at 4977.494 kb on + strand at 4977.494 kb on + strand at 4977.494 kb on + strand at 4977.494 kb on + strand at 4977.494 kb on + strand at 4977.494 kb on + strand at 4977.494 kb on + strand at 4977.494 kb on + strand at 4977.495 kb on - strand at 4977.495 kb on - strand at 4977.495 kb on - strand at 4977.495 kb on - strand at 4977.495 kb on - strand at 4977.495 kb on - strand at 4977.495 kb on - strand at 4977.495 kb on - strand at 4977.542 kb on + strand at 4977.543 kb on - strand at 4977.563 kb on + strand at 4977.564 kb on - strand at 4977.645 kb on - strand at 4977.657 kb on + strand at 4977.657 kb on + strand at 4977.657 kb on + strand at 4977.657 kb on + strand at 4977.657 kb on + strand at 4977.657 kb on + strand at 4977.657 kb on + strand at 4977.658 kb on - strand at 4977.658 kb on - strand at 4977.658 kb on - strand at 4977.658 kb on - strand at 4977.658 kb on - strand at 4977.658 kb on - strand at 4977.658 kb on - strand at 4977.658 kb on - strand at 4977.658 kb on - strand at 4977.690 kb on - strand at 4977.690 kb on - strand at 4977.690 kb on - strand at 4977.773 kb on + strand at 4977.774 kb on - strand at 4977.834 kb on - strand at 4978.200 kb on + strand, within Pf6N2E2_4277 at 4978.205 kb on + strand, within Pf6N2E2_4277 at 4978.205 kb on + strand, within Pf6N2E2_4277 at 4978.205 kb on + strand, within Pf6N2E2_4277 at 4978.206 kb on - strand, within Pf6N2E2_4277 at 4978.206 kb on - strand, within Pf6N2E2_4277 at 4978.206 kb on - strand, within Pf6N2E2_4277 at 4978.206 kb on - strand, within Pf6N2E2_4277 at 4978.206 kb on - strand, within Pf6N2E2_4277 at 4978.206 kb on - strand, within Pf6N2E2_4277 at 4978.206 kb on - strand, within Pf6N2E2_4277 at 4978.207 kb on + strand, within Pf6N2E2_4277 at 4978.207 kb on + strand, within Pf6N2E2_4277 at 4978.208 kb on - strand, within Pf6N2E2_4277 at 4978.208 kb on - strand, within Pf6N2E2_4277 at 4978.208 kb on - strand, within Pf6N2E2_4277 at 4978.208 kb on - strand, within Pf6N2E2_4277
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 4,975,652 + -0.6 4,975,652 + +0.5 4,975,653 - +0.3 4,975,653 - -0.1 4,975,740 + +0.5 4,975,795 - -1.3 4,975,798 + +1.7 4,975,799 - +0.2 4,975,802 + +1.1 4,975,830 - Pf6N2E2_4275 0.12 -0.4 4,975,979 + Pf6N2E2_4275 0.59 -0.2 4,975,979 + Pf6N2E2_4275 0.59 +3.5 4,975,979 + Pf6N2E2_4275 0.59 -0.2 4,975,979 + Pf6N2E2_4275 0.59 +0.8 4,975,979 + Pf6N2E2_4275 0.59 -1.4 4,975,980 - Pf6N2E2_4275 0.59 -0.8 4,976,015 - Pf6N2E2_4275 0.70 -0.7 4,976,015 - Pf6N2E2_4275 0.70 +1.2 4,976,021 + Pf6N2E2_4275 0.72 +1.6 4,976,021 + Pf6N2E2_4275 0.72 -0.1 4,976,111 - -3.3 4,976,114 - -0.7 4,976,239 + +0.9 4,976,248 + -2.9 4,976,249 - +0.7 4,976,261 - -2.6 4,976,261 - +0.2 4,976,261 - +1.2 4,976,261 - +0.7 4,976,262 + -1.0 4,976,263 - +1.4 4,976,263 - +1.0 4,976,263 - -0.5 4,976,263 - +0.5 4,976,263 - -0.8 4,976,398 - -1.4 4,976,398 - -1.4 4,976,398 - +0.2 4,976,482 + -0.6 4,976,482 + -0.1 4,976,484 + -0.7 4,976,488 + +1.4 4,976,489 - -1.1 4,976,499 + -0.3 4,976,499 + +0.9 4,976,499 + -0.8 4,976,499 + -1.2 4,976,499 + +0.3 4,976,499 + +1.5 4,976,500 - -1.1 4,976,610 + -2.1 4,976,610 + -2.5 4,976,610 + +0.3 4,976,611 - +0.7 4,976,611 - -2.5 4,976,611 - -0.1 4,976,638 + Pf6N2E2_4276 0.12 -2.3 4,976,638 + Pf6N2E2_4276 0.12 -2.8 4,976,638 + Pf6N2E2_4276 0.12 -0.7 4,976,638 + Pf6N2E2_4276 0.12 -3.4 4,976,638 + Pf6N2E2_4276 0.12 -1.5 4,976,638 + Pf6N2E2_4276 0.12 -2.7 4,976,638 + Pf6N2E2_4276 0.12 -1.1 4,976,639 - Pf6N2E2_4276 0.12 -2.5 4,976,639 - Pf6N2E2_4276 0.12 -1.7 4,976,639 - Pf6N2E2_4276 0.12 +0.8 4,976,639 - Pf6N2E2_4276 0.12 -0.4 4,976,639 - Pf6N2E2_4276 0.12 -2.7 4,976,816 + Pf6N2E2_4276 0.32 -0.7 4,976,817 - Pf6N2E2_4276 0.32 -0.7 4,976,849 - Pf6N2E2_4276 0.36 -0.7 4,976,849 - Pf6N2E2_4276 0.36 -1.8 4,976,937 - Pf6N2E2_4276 0.46 -2.1 4,976,937 - Pf6N2E2_4276 0.46 -2.4 4,977,014 + Pf6N2E2_4276 0.55 -2.4 4,977,283 - Pf6N2E2_4276 0.86 -2.9 4,977,401 + +1.2 4,977,401 + +1.5 4,977,402 - -2.7 4,977,402 - +0.2 4,977,402 - +0.5 4,977,402 - -2.1 4,977,402 - -0.1 4,977,402 - -0.3 4,977,446 + +0.7 4,977,446 + +1.0 4,977,447 - +0.4 4,977,447 - -0.7 4,977,447 - +0.6 4,977,490 + -1.1 4,977,490 + -2.2 4,977,491 - +0.1 4,977,491 - -0.2 4,977,491 - -4.1 4,977,494 + -0.4 4,977,494 + +1.3 4,977,494 + -2.8 4,977,494 + -0.4 4,977,494 + -1.9 4,977,494 + -1.9 4,977,494 + -1.7 4,977,494 + +0.2 4,977,495 - -0.7 4,977,495 - -0.7 4,977,495 - +0.8 4,977,495 - +1.3 4,977,495 - +0.1 4,977,495 - +1.4 4,977,495 - +0.8 4,977,495 - -1.0 4,977,542 + +0.3 4,977,543 - +1.1 4,977,563 + +1.1 4,977,564 - -1.3 4,977,645 - -0.1 4,977,657 + +1.4 4,977,657 + -1.1 4,977,657 + -2.2 4,977,657 + +1.6 4,977,657 + -1.4 4,977,657 + -1.6 4,977,657 + -3.7 4,977,658 - -2.8 4,977,658 - -0.9 4,977,658 - -0.1 4,977,658 - +0.7 4,977,658 - -1.7 4,977,658 - -0.7 4,977,658 - -0.7 4,977,658 - -0.7 4,977,658 - -0.8 4,977,690 - +0.1 4,977,690 - -4.5 4,977,690 - -3.7 4,977,773 + -1.5 4,977,774 - -2.1 4,977,834 - +0.8 4,978,200 + Pf6N2E2_4277 0.39 +0.1 4,978,205 + Pf6N2E2_4277 0.40 -2.1 4,978,205 + Pf6N2E2_4277 0.40 -1.9 4,978,205 + Pf6N2E2_4277 0.40 -1.4 4,978,206 - Pf6N2E2_4277 0.40 -1.7 4,978,206 - Pf6N2E2_4277 0.40 +1.5 4,978,206 - Pf6N2E2_4277 0.40 -3.8 4,978,206 - Pf6N2E2_4277 0.40 -2.0 4,978,206 - Pf6N2E2_4277 0.40 -1.1 4,978,206 - Pf6N2E2_4277 0.40 -3.7 4,978,206 - Pf6N2E2_4277 0.40 -3.9 4,978,207 + Pf6N2E2_4277 0.40 -2.9 4,978,207 + Pf6N2E2_4277 0.40 -0.5 4,978,208 - Pf6N2E2_4277 0.40 -2.8 4,978,208 - Pf6N2E2_4277 0.40 -0.6 4,978,208 - Pf6N2E2_4277 0.40 -2.6 4,978,208 - Pf6N2E2_4277 0.40 -4.0
Or see this region's nucleotide sequence