Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4046 and Pf6N2E2_4047 are separated by 84 nucleotides Pf6N2E2_4047 and Pf6N2E2_4048 overlap by 1 nucleotides
Pf6N2E2_4046 - FIG00953482: hypothetical protein, at 4,726,072 to 4,728,033
_4046
Pf6N2E2_4047 - Tryptophan synthase alpha chain (EC 4.2.1.20), at 4,728,118 to 4,728,930
_4047
Pf6N2E2_4048 - Tryptophan synthase beta chain (EC 4.2.1.20), at 4,728,930 to 4,730,162
_4048
Position (kb)
4728
4729 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4727.119 kb on + strand, within Pf6N2E2_4046 at 4727.119 kb on + strand, within Pf6N2E2_4046 at 4727.119 kb on + strand, within Pf6N2E2_4046 at 4727.120 kb on - strand, within Pf6N2E2_4046 at 4727.138 kb on + strand, within Pf6N2E2_4046 at 4727.138 kb on + strand, within Pf6N2E2_4046 at 4727.139 kb on - strand, within Pf6N2E2_4046 at 4727.139 kb on - strand, within Pf6N2E2_4046 at 4727.167 kb on + strand, within Pf6N2E2_4046 at 4727.167 kb on + strand, within Pf6N2E2_4046 at 4727.167 kb on + strand, within Pf6N2E2_4046 at 4727.168 kb on - strand, within Pf6N2E2_4046 at 4727.168 kb on - strand, within Pf6N2E2_4046 at 4727.168 kb on - strand, within Pf6N2E2_4046 at 4727.269 kb on + strand, within Pf6N2E2_4046 at 4727.269 kb on + strand, within Pf6N2E2_4046 at 4727.281 kb on + strand, within Pf6N2E2_4046 at 4727.281 kb on + strand, within Pf6N2E2_4046 at 4727.281 kb on + strand, within Pf6N2E2_4046 at 4727.281 kb on + strand, within Pf6N2E2_4046 at 4727.281 kb on + strand, within Pf6N2E2_4046 at 4727.282 kb on - strand, within Pf6N2E2_4046 at 4727.282 kb on - strand, within Pf6N2E2_4046 at 4727.282 kb on - strand, within Pf6N2E2_4046 at 4727.282 kb on - strand, within Pf6N2E2_4046 at 4727.282 kb on - strand, within Pf6N2E2_4046 at 4727.282 kb on - strand, within Pf6N2E2_4046 at 4727.284 kb on + strand, within Pf6N2E2_4046 at 4727.284 kb on + strand, within Pf6N2E2_4046 at 4727.284 kb on + strand, within Pf6N2E2_4046 at 4727.284 kb on + strand, within Pf6N2E2_4046 at 4727.284 kb on + strand, within Pf6N2E2_4046 at 4727.284 kb on + strand, within Pf6N2E2_4046 at 4727.284 kb on + strand, within Pf6N2E2_4046 at 4727.284 kb on + strand, within Pf6N2E2_4046 at 4727.285 kb on - strand, within Pf6N2E2_4046 at 4727.285 kb on - strand, within Pf6N2E2_4046 at 4727.285 kb on - strand, within Pf6N2E2_4046 at 4727.285 kb on - strand, within Pf6N2E2_4046 at 4727.285 kb on - strand, within Pf6N2E2_4046 at 4727.298 kb on + strand, within Pf6N2E2_4046 at 4727.298 kb on + strand, within Pf6N2E2_4046 at 4727.298 kb on + strand, within Pf6N2E2_4046 at 4727.299 kb on - strand, within Pf6N2E2_4046 at 4727.299 kb on - strand, within Pf6N2E2_4046 at 4727.521 kb on + strand, within Pf6N2E2_4046 at 4727.521 kb on + strand, within Pf6N2E2_4046 at 4727.522 kb on - strand, within Pf6N2E2_4046 at 4727.522 kb on - strand, within Pf6N2E2_4046 at 4728.053 kb on + strand at 4728.054 kb on - strand at 4728.054 kb on - strand at 4728.405 kb on - strand, within Pf6N2E2_4047 at 4728.405 kb on - strand, within Pf6N2E2_4047 at 4728.405 kb on - strand, within Pf6N2E2_4047 at 4728.405 kb on - strand, within Pf6N2E2_4047 at 4728.405 kb on - strand, within Pf6N2E2_4047 at 4728.405 kb on - strand, within Pf6N2E2_4047 at 4728.405 kb on - strand, within Pf6N2E2_4047 at 4728.405 kb on - strand, within Pf6N2E2_4047 at 4728.408 kb on - strand, within Pf6N2E2_4047 at 4728.408 kb on - strand, within Pf6N2E2_4047 at 4728.408 kb on - strand, within Pf6N2E2_4047 at 4728.409 kb on + strand, within Pf6N2E2_4047 at 4728.410 kb on - strand, within Pf6N2E2_4047 at 4728.410 kb on - strand, within Pf6N2E2_4047 at 4728.410 kb on - strand, within Pf6N2E2_4047 at 4728.410 kb on - strand, within Pf6N2E2_4047 at 4728.410 kb on - strand, within Pf6N2E2_4047 at 4728.410 kb on - strand, within Pf6N2E2_4047 at 4728.410 kb on - strand, within Pf6N2E2_4047 at 4728.410 kb on - strand, within Pf6N2E2_4047 at 4728.410 kb on - strand, within Pf6N2E2_4047 at 4728.627 kb on - strand, within Pf6N2E2_4047 at 4728.627 kb on - strand, within Pf6N2E2_4047 at 4729.157 kb on - strand, within Pf6N2E2_4048 at 4729.157 kb on - strand, within Pf6N2E2_4048 at 4729.294 kb on - strand, within Pf6N2E2_4048 at 4729.294 kb on - strand, within Pf6N2E2_4048 at 4729.571 kb on - strand, within Pf6N2E2_4048 at 4729.571 kb on - strand, within Pf6N2E2_4048 at 4729.571 kb on - strand, within Pf6N2E2_4048 at 4729.571 kb on - strand, within Pf6N2E2_4048 at 4729.730 kb on - strand, within Pf6N2E2_4048 at 4729.730 kb on - strand, within Pf6N2E2_4048 at 4729.730 kb on - strand, within Pf6N2E2_4048 at 4729.730 kb on - strand, within Pf6N2E2_4048 at 4729.730 kb on - strand, within Pf6N2E2_4048 at 4729.907 kb on - strand, within Pf6N2E2_4048 at 4729.907 kb on - strand, within Pf6N2E2_4048 at 4729.907 kb on - strand, within Pf6N2E2_4048 at 4729.907 kb on - strand, within Pf6N2E2_4048 at 4729.907 kb on - strand, within Pf6N2E2_4048 at 4729.907 kb on - strand, within Pf6N2E2_4048 at 4729.928 kb on - strand, within Pf6N2E2_4048
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 4,727,119 + Pf6N2E2_4046 0.53 +0.9 4,727,119 + Pf6N2E2_4046 0.53 -0.1 4,727,119 + Pf6N2E2_4046 0.53 +1.1 4,727,120 - Pf6N2E2_4046 0.53 +2.1 4,727,138 + Pf6N2E2_4046 0.54 +1.0 4,727,138 + Pf6N2E2_4046 0.54 +1.6 4,727,139 - Pf6N2E2_4046 0.54 +0.1 4,727,139 - Pf6N2E2_4046 0.54 +0.1 4,727,167 + Pf6N2E2_4046 0.56 +0.4 4,727,167 + Pf6N2E2_4046 0.56 +0.8 4,727,167 + Pf6N2E2_4046 0.56 +0.8 4,727,168 - Pf6N2E2_4046 0.56 +0.8 4,727,168 - Pf6N2E2_4046 0.56 +1.1 4,727,168 - Pf6N2E2_4046 0.56 -2.4 4,727,269 + Pf6N2E2_4046 0.61 -0.5 4,727,269 + Pf6N2E2_4046 0.61 -1.7 4,727,281 + Pf6N2E2_4046 0.62 +0.8 4,727,281 + Pf6N2E2_4046 0.62 -0.9 4,727,281 + Pf6N2E2_4046 0.62 +0.3 4,727,281 + Pf6N2E2_4046 0.62 +0.1 4,727,281 + Pf6N2E2_4046 0.62 +0.6 4,727,282 - Pf6N2E2_4046 0.62 +0.1 4,727,282 - Pf6N2E2_4046 0.62 +0.6 4,727,282 - Pf6N2E2_4046 0.62 -0.0 4,727,282 - Pf6N2E2_4046 0.62 -1.3 4,727,282 - Pf6N2E2_4046 0.62 +0.0 4,727,282 - Pf6N2E2_4046 0.62 +1.5 4,727,284 + Pf6N2E2_4046 0.62 -0.6 4,727,284 + Pf6N2E2_4046 0.62 +0.3 4,727,284 + Pf6N2E2_4046 0.62 +0.1 4,727,284 + Pf6N2E2_4046 0.62 +1.1 4,727,284 + Pf6N2E2_4046 0.62 +1.1 4,727,284 + Pf6N2E2_4046 0.62 -0.7 4,727,284 + Pf6N2E2_4046 0.62 -0.1 4,727,284 + Pf6N2E2_4046 0.62 -0.2 4,727,285 - Pf6N2E2_4046 0.62 +1.3 4,727,285 - Pf6N2E2_4046 0.62 +1.5 4,727,285 - Pf6N2E2_4046 0.62 -0.4 4,727,285 - Pf6N2E2_4046 0.62 +1.5 4,727,285 - Pf6N2E2_4046 0.62 -1.8 4,727,298 + Pf6N2E2_4046 0.62 +1.5 4,727,298 + Pf6N2E2_4046 0.62 -0.3 4,727,298 + Pf6N2E2_4046 0.62 +0.9 4,727,299 - Pf6N2E2_4046 0.63 -0.5 4,727,299 - Pf6N2E2_4046 0.63 -1.2 4,727,521 + Pf6N2E2_4046 0.74 +0.9 4,727,521 + Pf6N2E2_4046 0.74 +1.0 4,727,522 - Pf6N2E2_4046 0.74 +0.2 4,727,522 - Pf6N2E2_4046 0.74 +0.7 4,728,053 + +0.9 4,728,054 - -1.4 4,728,054 - +1.1 4,728,405 - Pf6N2E2_4047 0.35 -3.3 4,728,405 - Pf6N2E2_4047 0.35 -2.2 4,728,405 - Pf6N2E2_4047 0.35 -2.8 4,728,405 - Pf6N2E2_4047 0.35 -2.3 4,728,405 - Pf6N2E2_4047 0.35 -3.5 4,728,405 - Pf6N2E2_4047 0.35 -3.0 4,728,405 - Pf6N2E2_4047 0.35 -0.6 4,728,405 - Pf6N2E2_4047 0.35 -1.8 4,728,408 - Pf6N2E2_4047 0.36 +1.2 4,728,408 - Pf6N2E2_4047 0.36 -1.8 4,728,408 - Pf6N2E2_4047 0.36 -2.7 4,728,409 + Pf6N2E2_4047 0.36 -1.4 4,728,410 - Pf6N2E2_4047 0.36 -2.5 4,728,410 - Pf6N2E2_4047 0.36 -2.2 4,728,410 - Pf6N2E2_4047 0.36 -2.4 4,728,410 - Pf6N2E2_4047 0.36 -3.6 4,728,410 - Pf6N2E2_4047 0.36 -2.5 4,728,410 - Pf6N2E2_4047 0.36 -1.7 4,728,410 - Pf6N2E2_4047 0.36 -3.0 4,728,410 - Pf6N2E2_4047 0.36 -2.7 4,728,410 - Pf6N2E2_4047 0.36 -2.8 4,728,627 - Pf6N2E2_4047 0.63 -3.2 4,728,627 - Pf6N2E2_4047 0.63 -2.7 4,729,157 - Pf6N2E2_4048 0.18 -2.7 4,729,157 - Pf6N2E2_4048 0.18 -2.3 4,729,294 - Pf6N2E2_4048 0.30 -3.0 4,729,294 - Pf6N2E2_4048 0.30 -2.4 4,729,571 - Pf6N2E2_4048 0.52 -3.0 4,729,571 - Pf6N2E2_4048 0.52 -1.7 4,729,571 - Pf6N2E2_4048 0.52 -0.9 4,729,571 - Pf6N2E2_4048 0.52 -0.6 4,729,730 - Pf6N2E2_4048 0.65 -0.9 4,729,730 - Pf6N2E2_4048 0.65 -2.7 4,729,730 - Pf6N2E2_4048 0.65 -3.2 4,729,730 - Pf6N2E2_4048 0.65 -3.7 4,729,730 - Pf6N2E2_4048 0.65 +0.3 4,729,907 - Pf6N2E2_4048 0.79 -2.5 4,729,907 - Pf6N2E2_4048 0.79 -4.3 4,729,907 - Pf6N2E2_4048 0.79 -3.2 4,729,907 - Pf6N2E2_4048 0.79 -0.9 4,729,907 - Pf6N2E2_4048 0.79 -0.6 4,729,907 - Pf6N2E2_4048 0.79 -0.1 4,729,928 - Pf6N2E2_4048 0.81 -2.5
Or see this region's nucleotide sequence