Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4047

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4046 and Pf6N2E2_4047 are separated by 84 nucleotidesPf6N2E2_4047 and Pf6N2E2_4048 overlap by 1 nucleotides Pf6N2E2_4046 - FIG00953482: hypothetical protein, at 4,726,072 to 4,728,033 _4046 Pf6N2E2_4047 - Tryptophan synthase alpha chain (EC 4.2.1.20), at 4,728,118 to 4,728,930 _4047 Pf6N2E2_4048 - Tryptophan synthase beta chain (EC 4.2.1.20), at 4,728,930 to 4,730,162 _4048 Position (kb) 4728 4729Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4727.119 kb on + strand, within Pf6N2E2_4046at 4727.119 kb on + strand, within Pf6N2E2_4046at 4727.119 kb on + strand, within Pf6N2E2_4046at 4727.120 kb on - strand, within Pf6N2E2_4046at 4727.138 kb on + strand, within Pf6N2E2_4046at 4727.138 kb on + strand, within Pf6N2E2_4046at 4727.139 kb on - strand, within Pf6N2E2_4046at 4727.139 kb on - strand, within Pf6N2E2_4046at 4727.167 kb on + strand, within Pf6N2E2_4046at 4727.167 kb on + strand, within Pf6N2E2_4046at 4727.167 kb on + strand, within Pf6N2E2_4046at 4727.168 kb on - strand, within Pf6N2E2_4046at 4727.168 kb on - strand, within Pf6N2E2_4046at 4727.168 kb on - strand, within Pf6N2E2_4046at 4727.269 kb on + strand, within Pf6N2E2_4046at 4727.269 kb on + strand, within Pf6N2E2_4046at 4727.281 kb on + strand, within Pf6N2E2_4046at 4727.281 kb on + strand, within Pf6N2E2_4046at 4727.281 kb on + strand, within Pf6N2E2_4046at 4727.281 kb on + strand, within Pf6N2E2_4046at 4727.281 kb on + strand, within Pf6N2E2_4046at 4727.282 kb on - strand, within Pf6N2E2_4046at 4727.282 kb on - strand, within Pf6N2E2_4046at 4727.282 kb on - strand, within Pf6N2E2_4046at 4727.282 kb on - strand, within Pf6N2E2_4046at 4727.282 kb on - strand, within Pf6N2E2_4046at 4727.282 kb on - strand, within Pf6N2E2_4046at 4727.284 kb on + strand, within Pf6N2E2_4046at 4727.284 kb on + strand, within Pf6N2E2_4046at 4727.284 kb on + strand, within Pf6N2E2_4046at 4727.284 kb on + strand, within Pf6N2E2_4046at 4727.284 kb on + strand, within Pf6N2E2_4046at 4727.284 kb on + strand, within Pf6N2E2_4046at 4727.284 kb on + strand, within Pf6N2E2_4046at 4727.284 kb on + strand, within Pf6N2E2_4046at 4727.285 kb on - strand, within Pf6N2E2_4046at 4727.285 kb on - strand, within Pf6N2E2_4046at 4727.285 kb on - strand, within Pf6N2E2_4046at 4727.285 kb on - strand, within Pf6N2E2_4046at 4727.285 kb on - strand, within Pf6N2E2_4046at 4727.298 kb on + strand, within Pf6N2E2_4046at 4727.298 kb on + strand, within Pf6N2E2_4046at 4727.298 kb on + strand, within Pf6N2E2_4046at 4727.299 kb on - strand, within Pf6N2E2_4046at 4727.299 kb on - strand, within Pf6N2E2_4046at 4727.521 kb on + strand, within Pf6N2E2_4046at 4727.521 kb on + strand, within Pf6N2E2_4046at 4727.522 kb on - strand, within Pf6N2E2_4046at 4727.522 kb on - strand, within Pf6N2E2_4046at 4728.053 kb on + strandat 4728.054 kb on - strandat 4728.054 kb on - strandat 4728.405 kb on - strand, within Pf6N2E2_4047at 4728.405 kb on - strand, within Pf6N2E2_4047at 4728.405 kb on - strand, within Pf6N2E2_4047at 4728.405 kb on - strand, within Pf6N2E2_4047at 4728.405 kb on - strand, within Pf6N2E2_4047at 4728.405 kb on - strand, within Pf6N2E2_4047at 4728.405 kb on - strand, within Pf6N2E2_4047at 4728.405 kb on - strand, within Pf6N2E2_4047at 4728.408 kb on - strand, within Pf6N2E2_4047at 4728.408 kb on - strand, within Pf6N2E2_4047at 4728.408 kb on - strand, within Pf6N2E2_4047at 4728.409 kb on + strand, within Pf6N2E2_4047at 4728.410 kb on - strand, within Pf6N2E2_4047at 4728.410 kb on - strand, within Pf6N2E2_4047at 4728.410 kb on - strand, within Pf6N2E2_4047at 4728.410 kb on - strand, within Pf6N2E2_4047at 4728.410 kb on - strand, within Pf6N2E2_4047at 4728.410 kb on - strand, within Pf6N2E2_4047at 4728.410 kb on - strand, within Pf6N2E2_4047at 4728.410 kb on - strand, within Pf6N2E2_4047at 4728.410 kb on - strand, within Pf6N2E2_4047at 4728.627 kb on - strand, within Pf6N2E2_4047at 4728.627 kb on - strand, within Pf6N2E2_4047at 4729.157 kb on - strand, within Pf6N2E2_4048at 4729.157 kb on - strand, within Pf6N2E2_4048at 4729.294 kb on - strand, within Pf6N2E2_4048at 4729.294 kb on - strand, within Pf6N2E2_4048at 4729.571 kb on - strand, within Pf6N2E2_4048at 4729.571 kb on - strand, within Pf6N2E2_4048at 4729.571 kb on - strand, within Pf6N2E2_4048at 4729.571 kb on - strand, within Pf6N2E2_4048at 4729.730 kb on - strand, within Pf6N2E2_4048at 4729.730 kb on - strand, within Pf6N2E2_4048at 4729.730 kb on - strand, within Pf6N2E2_4048at 4729.730 kb on - strand, within Pf6N2E2_4048at 4729.730 kb on - strand, within Pf6N2E2_4048at 4729.907 kb on - strand, within Pf6N2E2_4048at 4729.907 kb on - strand, within Pf6N2E2_4048at 4729.907 kb on - strand, within Pf6N2E2_4048at 4729.907 kb on - strand, within Pf6N2E2_4048at 4729.907 kb on - strand, within Pf6N2E2_4048at 4729.907 kb on - strand, within Pf6N2E2_4048at 4729.928 kb on - strand, within Pf6N2E2_4048

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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4,727,119 + Pf6N2E2_4046 0.53 +0.9
4,727,119 + Pf6N2E2_4046 0.53 -0.1
4,727,119 + Pf6N2E2_4046 0.53 +1.1
4,727,120 - Pf6N2E2_4046 0.53 +2.1
4,727,138 + Pf6N2E2_4046 0.54 +1.0
4,727,138 + Pf6N2E2_4046 0.54 +1.6
4,727,139 - Pf6N2E2_4046 0.54 +0.1
4,727,139 - Pf6N2E2_4046 0.54 +0.1
4,727,167 + Pf6N2E2_4046 0.56 +0.4
4,727,167 + Pf6N2E2_4046 0.56 +0.8
4,727,167 + Pf6N2E2_4046 0.56 +0.8
4,727,168 - Pf6N2E2_4046 0.56 +0.8
4,727,168 - Pf6N2E2_4046 0.56 +1.1
4,727,168 - Pf6N2E2_4046 0.56 -2.4
4,727,269 + Pf6N2E2_4046 0.61 -0.5
4,727,269 + Pf6N2E2_4046 0.61 -1.7
4,727,281 + Pf6N2E2_4046 0.62 +0.8
4,727,281 + Pf6N2E2_4046 0.62 -0.9
4,727,281 + Pf6N2E2_4046 0.62 +0.3
4,727,281 + Pf6N2E2_4046 0.62 +0.1
4,727,281 + Pf6N2E2_4046 0.62 +0.6
4,727,282 - Pf6N2E2_4046 0.62 +0.1
4,727,282 - Pf6N2E2_4046 0.62 +0.6
4,727,282 - Pf6N2E2_4046 0.62 -0.0
4,727,282 - Pf6N2E2_4046 0.62 -1.3
4,727,282 - Pf6N2E2_4046 0.62 +0.0
4,727,282 - Pf6N2E2_4046 0.62 +1.5
4,727,284 + Pf6N2E2_4046 0.62 -0.6
4,727,284 + Pf6N2E2_4046 0.62 +0.3
4,727,284 + Pf6N2E2_4046 0.62 +0.1
4,727,284 + Pf6N2E2_4046 0.62 +1.1
4,727,284 + Pf6N2E2_4046 0.62 +1.1
4,727,284 + Pf6N2E2_4046 0.62 -0.7
4,727,284 + Pf6N2E2_4046 0.62 -0.1
4,727,284 + Pf6N2E2_4046 0.62 -0.2
4,727,285 - Pf6N2E2_4046 0.62 +1.3
4,727,285 - Pf6N2E2_4046 0.62 +1.5
4,727,285 - Pf6N2E2_4046 0.62 -0.4
4,727,285 - Pf6N2E2_4046 0.62 +1.5
4,727,285 - Pf6N2E2_4046 0.62 -1.8
4,727,298 + Pf6N2E2_4046 0.62 +1.5
4,727,298 + Pf6N2E2_4046 0.62 -0.3
4,727,298 + Pf6N2E2_4046 0.62 +0.9
4,727,299 - Pf6N2E2_4046 0.63 -0.5
4,727,299 - Pf6N2E2_4046 0.63 -1.2
4,727,521 + Pf6N2E2_4046 0.74 +0.9
4,727,521 + Pf6N2E2_4046 0.74 +1.0
4,727,522 - Pf6N2E2_4046 0.74 +0.2
4,727,522 - Pf6N2E2_4046 0.74 +0.7
4,728,053 + +0.9
4,728,054 - -1.4
4,728,054 - +1.1
4,728,405 - Pf6N2E2_4047 0.35 -3.3
4,728,405 - Pf6N2E2_4047 0.35 -2.2
4,728,405 - Pf6N2E2_4047 0.35 -2.8
4,728,405 - Pf6N2E2_4047 0.35 -2.3
4,728,405 - Pf6N2E2_4047 0.35 -3.5
4,728,405 - Pf6N2E2_4047 0.35 -3.0
4,728,405 - Pf6N2E2_4047 0.35 -0.6
4,728,405 - Pf6N2E2_4047 0.35 -1.8
4,728,408 - Pf6N2E2_4047 0.36 +1.2
4,728,408 - Pf6N2E2_4047 0.36 -1.8
4,728,408 - Pf6N2E2_4047 0.36 -2.7
4,728,409 + Pf6N2E2_4047 0.36 -1.4
4,728,410 - Pf6N2E2_4047 0.36 -2.5
4,728,410 - Pf6N2E2_4047 0.36 -2.2
4,728,410 - Pf6N2E2_4047 0.36 -2.4
4,728,410 - Pf6N2E2_4047 0.36 -3.6
4,728,410 - Pf6N2E2_4047 0.36 -2.5
4,728,410 - Pf6N2E2_4047 0.36 -1.7
4,728,410 - Pf6N2E2_4047 0.36 -3.0
4,728,410 - Pf6N2E2_4047 0.36 -2.7
4,728,410 - Pf6N2E2_4047 0.36 -2.8
4,728,627 - Pf6N2E2_4047 0.63 -3.2
4,728,627 - Pf6N2E2_4047 0.63 -2.7
4,729,157 - Pf6N2E2_4048 0.18 -2.7
4,729,157 - Pf6N2E2_4048 0.18 -2.3
4,729,294 - Pf6N2E2_4048 0.30 -3.0
4,729,294 - Pf6N2E2_4048 0.30 -2.4
4,729,571 - Pf6N2E2_4048 0.52 -3.0
4,729,571 - Pf6N2E2_4048 0.52 -1.7
4,729,571 - Pf6N2E2_4048 0.52 -0.9
4,729,571 - Pf6N2E2_4048 0.52 -0.6
4,729,730 - Pf6N2E2_4048 0.65 -0.9
4,729,730 - Pf6N2E2_4048 0.65 -2.7
4,729,730 - Pf6N2E2_4048 0.65 -3.2
4,729,730 - Pf6N2E2_4048 0.65 -3.7
4,729,730 - Pf6N2E2_4048 0.65 +0.3
4,729,907 - Pf6N2E2_4048 0.79 -2.5
4,729,907 - Pf6N2E2_4048 0.79 -4.3
4,729,907 - Pf6N2E2_4048 0.79 -3.2
4,729,907 - Pf6N2E2_4048 0.79 -0.9
4,729,907 - Pf6N2E2_4048 0.79 -0.6
4,729,907 - Pf6N2E2_4048 0.79 -0.1
4,729,928 - Pf6N2E2_4048 0.81 -2.5

Or see this region's nucleotide sequence