Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3940 and Pf6N2E2_3941 are separated by 143 nucleotides Pf6N2E2_3941 and Pf6N2E2_3942 are separated by 22 nucleotides Pf6N2E2_3942 and Pf6N2E2_3943 are separated by 144 nucleotides
Pf6N2E2_3940 - Phosphoserine phosphatase (EC 3.1.3.3), at 4,577,073 to 4,577,729
_3940
Pf6N2E2_3941 - Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-), at 4,577,873 to 4,578,352
_3941
Pf6N2E2_3942 - FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated, at 4,578,375 to 4,580,654
_3942
Pf6N2E2_3943 - COG3332, at 4,580,799 to 4,581,584
_3943
Position (kb)
4578
4579
4580
4581 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4577.491 kb on + strand, within Pf6N2E2_3940 at 4577.491 kb on + strand, within Pf6N2E2_3940 at 4577.491 kb on + strand, within Pf6N2E2_3940 at 4577.491 kb on + strand, within Pf6N2E2_3940 at 4577.492 kb on - strand, within Pf6N2E2_3940 at 4577.560 kb on + strand, within Pf6N2E2_3940 at 4577.560 kb on + strand, within Pf6N2E2_3940 at 4577.590 kb on + strand, within Pf6N2E2_3940 at 4577.591 kb on - strand, within Pf6N2E2_3940 at 4577.623 kb on + strand, within Pf6N2E2_3940 at 4577.623 kb on + strand, within Pf6N2E2_3940 at 4577.623 kb on + strand, within Pf6N2E2_3940 at 4577.623 kb on + strand, within Pf6N2E2_3940 at 4577.623 kb on + strand, within Pf6N2E2_3940 at 4577.623 kb on + strand, within Pf6N2E2_3940 at 4577.623 kb on + strand, within Pf6N2E2_3940 at 4577.623 kb on + strand, within Pf6N2E2_3940 at 4577.623 kb on + strand, within Pf6N2E2_3940 at 4577.623 kb on + strand, within Pf6N2E2_3940 at 4577.623 kb on + strand, within Pf6N2E2_3940 at 4577.623 kb on + strand, within Pf6N2E2_3940 at 4577.624 kb on - strand, within Pf6N2E2_3940 at 4577.624 kb on - strand, within Pf6N2E2_3940 at 4577.624 kb on - strand, within Pf6N2E2_3940 at 4577.624 kb on - strand, within Pf6N2E2_3940 at 4577.659 kb on + strand, within Pf6N2E2_3940 at 4577.660 kb on - strand, within Pf6N2E2_3940 at 4577.660 kb on - strand, within Pf6N2E2_3940 at 4577.715 kb on + strand at 4577.736 kb on + strand at 4577.737 kb on - strand at 4577.796 kb on + strand at 4577.796 kb on + strand at 4577.796 kb on + strand at 4577.796 kb on + strand at 4577.796 kb on + strand at 4577.797 kb on - strand at 4577.797 kb on - strand at 4577.797 kb on - strand at 4577.797 kb on - strand at 4577.797 kb on - strand at 4577.797 kb on - strand at 4577.797 kb on - strand at 4577.797 kb on - strand at 4577.801 kb on + strand at 4577.802 kb on - strand at 4577.918 kb on - strand at 4577.918 kb on - strand at 4578.257 kb on + strand, within Pf6N2E2_3941 at 4578.257 kb on + strand, within Pf6N2E2_3941 at 4578.257 kb on + strand, within Pf6N2E2_3941 at 4578.258 kb on - strand, within Pf6N2E2_3941 at 4578.258 kb on - strand, within Pf6N2E2_3941 at 4578.258 kb on - strand, within Pf6N2E2_3941 at 4578.258 kb on - strand, within Pf6N2E2_3941 at 4578.258 kb on - strand, within Pf6N2E2_3941 at 4578.303 kb on - strand, within Pf6N2E2_3941 at 4578.383 kb on + strand at 4578.383 kb on + strand at 4578.383 kb on + strand at 4578.384 kb on - strand at 4578.410 kb on + strand at 4578.411 kb on - strand at 4578.411 kb on - strand at 4578.411 kb on - strand at 4578.411 kb on - strand at 4578.447 kb on - strand at 4578.451 kb on + strand at 4578.451 kb on + strand at 4578.451 kb on + strand at 4578.452 kb on - strand at 4578.452 kb on - strand at 4578.452 kb on - strand at 4578.452 kb on - strand at 4578.452 kb on - strand at 4578.452 kb on - strand at 4578.452 kb on - strand at 4578.452 kb on - strand at 4578.496 kb on - strand at 4578.666 kb on + strand, within Pf6N2E2_3942 at 4578.666 kb on + strand, within Pf6N2E2_3942 at 4578.667 kb on - strand, within Pf6N2E2_3942 at 4578.693 kb on + strand, within Pf6N2E2_3942 at 4579.128 kb on + strand, within Pf6N2E2_3942 at 4579.128 kb on + strand, within Pf6N2E2_3942 at 4579.128 kb on + strand, within Pf6N2E2_3942 at 4579.129 kb on - strand, within Pf6N2E2_3942 at 4579.264 kb on - strand, within Pf6N2E2_3942 at 4579.264 kb on - strand, within Pf6N2E2_3942 at 4579.317 kb on + strand, within Pf6N2E2_3942 at 4579.318 kb on - strand, within Pf6N2E2_3942 at 4579.318 kb on - strand, within Pf6N2E2_3942 at 4579.524 kb on + strand, within Pf6N2E2_3942 at 4579.524 kb on + strand, within Pf6N2E2_3942 at 4579.525 kb on - strand, within Pf6N2E2_3942 at 4579.563 kb on + strand, within Pf6N2E2_3942 at 4579.578 kb on + strand, within Pf6N2E2_3942 at 4579.578 kb on + strand, within Pf6N2E2_3942 at 4579.578 kb on + strand, within Pf6N2E2_3942 at 4579.579 kb on - strand, within Pf6N2E2_3942 at 4579.845 kb on + strand, within Pf6N2E2_3942 at 4579.846 kb on - strand, within Pf6N2E2_3942 at 4579.846 kb on - strand, within Pf6N2E2_3942 at 4579.926 kb on + strand, within Pf6N2E2_3942 at 4579.926 kb on + strand, within Pf6N2E2_3942 at 4579.927 kb on - strand, within Pf6N2E2_3942 at 4579.927 kb on - strand, within Pf6N2E2_3942 at 4580.203 kb on - strand, within Pf6N2E2_3942 at 4580.268 kb on + strand, within Pf6N2E2_3942 at 4580.313 kb on + strand, within Pf6N2E2_3942 at 4580.313 kb on + strand, within Pf6N2E2_3942 at 4580.313 kb on + strand, within Pf6N2E2_3942 at 4580.313 kb on + strand, within Pf6N2E2_3942 at 4580.313 kb on + strand, within Pf6N2E2_3942 at 4580.319 kb on + strand, within Pf6N2E2_3942 at 4580.319 kb on + strand, within Pf6N2E2_3942 at 4580.319 kb on + strand, within Pf6N2E2_3942 at 4580.360 kb on - strand, within Pf6N2E2_3942 at 4581.032 kb on + strand, within Pf6N2E2_3943 at 4581.032 kb on + strand, within Pf6N2E2_3943 at 4581.033 kb on - strand, within Pf6N2E2_3943 at 4581.136 kb on + strand, within Pf6N2E2_3943 at 4581.136 kb on + strand, within Pf6N2E2_3943 at 4581.137 kb on - strand, within Pf6N2E2_3943 at 4581.137 kb on - strand, within Pf6N2E2_3943 at 4581.229 kb on + strand, within Pf6N2E2_3943 at 4581.229 kb on + strand, within Pf6N2E2_3943 at 4581.229 kb on + strand, within Pf6N2E2_3943 at 4581.229 kb on + strand, within Pf6N2E2_3943 at 4581.230 kb on - strand, within Pf6N2E2_3943 at 4581.262 kb on + strand, within Pf6N2E2_3943 at 4581.263 kb on - strand, within Pf6N2E2_3943 at 4581.263 kb on - strand, within Pf6N2E2_3943 at 4581.263 kb on - strand, within Pf6N2E2_3943 at 4581.269 kb on + strand, within Pf6N2E2_3943 at 4581.270 kb on - strand, within Pf6N2E2_3943 at 4581.478 kb on + strand, within Pf6N2E2_3943 at 4581.478 kb on + strand, within Pf6N2E2_3943 at 4581.479 kb on - strand, within Pf6N2E2_3943 at 4581.540 kb on + strand at 4581.540 kb on + strand at 4581.540 kb on + strand at 4581.540 kb on + strand at 4581.541 kb on - strand at 4581.541 kb on - strand at 4581.574 kb on + strand at 4581.575 kb on - strand at 4581.575 kb on - strand at 4581.591 kb on + strand at 4581.592 kb on - strand at 4581.640 kb on - strand at 4581.647 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 4,577,491 + Pf6N2E2_3940 0.64 -1.4 4,577,491 + Pf6N2E2_3940 0.64 -2.1 4,577,491 + Pf6N2E2_3940 0.64 -3.9 4,577,491 + Pf6N2E2_3940 0.64 -3.4 4,577,492 - Pf6N2E2_3940 0.64 -0.5 4,577,560 + Pf6N2E2_3940 0.74 -3.5 4,577,560 + Pf6N2E2_3940 0.74 -2.7 4,577,590 + Pf6N2E2_3940 0.79 -0.7 4,577,591 - Pf6N2E2_3940 0.79 -0.6 4,577,623 + Pf6N2E2_3940 0.84 -1.6 4,577,623 + Pf6N2E2_3940 0.84 -2.1 4,577,623 + Pf6N2E2_3940 0.84 -1.2 4,577,623 + Pf6N2E2_3940 0.84 -2.8 4,577,623 + Pf6N2E2_3940 0.84 -2.7 4,577,623 + Pf6N2E2_3940 0.84 -2.3 4,577,623 + Pf6N2E2_3940 0.84 -1.9 4,577,623 + Pf6N2E2_3940 0.84 -2.0 4,577,623 + Pf6N2E2_3940 0.84 -2.0 4,577,623 + Pf6N2E2_3940 0.84 -2.1 4,577,623 + Pf6N2E2_3940 0.84 -1.0 4,577,623 + Pf6N2E2_3940 0.84 -2.2 4,577,624 - Pf6N2E2_3940 0.84 -0.8 4,577,624 - Pf6N2E2_3940 0.84 -1.0 4,577,624 - Pf6N2E2_3940 0.84 -2.2 4,577,624 - Pf6N2E2_3940 0.84 -3.4 4,577,659 + Pf6N2E2_3940 0.89 -2.7 4,577,660 - Pf6N2E2_3940 0.89 -2.1 4,577,660 - Pf6N2E2_3940 0.89 -2.6 4,577,715 + -1.0 4,577,736 + -3.5 4,577,737 - -3.6 4,577,796 + +1.5 4,577,796 + -0.2 4,577,796 + -0.5 4,577,796 + -0.7 4,577,796 + +0.6 4,577,797 - +0.8 4,577,797 - -1.8 4,577,797 - +1.0 4,577,797 - +0.5 4,577,797 - -0.7 4,577,797 - +0.8 4,577,797 - +0.3 4,577,797 - +0.8 4,577,801 + -0.0 4,577,802 - +1.6 4,577,918 - -2.6 4,577,918 - -1.9 4,578,257 + Pf6N2E2_3941 0.80 -0.7 4,578,257 + Pf6N2E2_3941 0.80 +0.5 4,578,257 + Pf6N2E2_3941 0.80 +1.2 4,578,258 - Pf6N2E2_3941 0.80 -2.3 4,578,258 - Pf6N2E2_3941 0.80 -1.2 4,578,258 - Pf6N2E2_3941 0.80 -2.9 4,578,258 - Pf6N2E2_3941 0.80 -1.8 4,578,258 - Pf6N2E2_3941 0.80 -2.4 4,578,303 - Pf6N2E2_3941 0.90 -1.4 4,578,383 + -1.8 4,578,383 + -1.6 4,578,383 + -0.7 4,578,384 - -2.9 4,578,410 + +0.4 4,578,411 - +0.3 4,578,411 - -3.5 4,578,411 - -4.1 4,578,411 - -0.1 4,578,447 - -0.4 4,578,451 + -0.9 4,578,451 + -2.4 4,578,451 + -2.2 4,578,452 - -2.5 4,578,452 - -0.3 4,578,452 - -0.9 4,578,452 - +0.3 4,578,452 - -2.0 4,578,452 - -0.3 4,578,452 - -2.3 4,578,452 - -1.2 4,578,496 - -1.6 4,578,666 + Pf6N2E2_3942 0.13 -1.0 4,578,666 + Pf6N2E2_3942 0.13 -1.6 4,578,667 - Pf6N2E2_3942 0.13 +1.5 4,578,693 + Pf6N2E2_3942 0.14 -1.9 4,579,128 + Pf6N2E2_3942 0.33 -3.7 4,579,128 + Pf6N2E2_3942 0.33 +0.3 4,579,128 + Pf6N2E2_3942 0.33 -0.2 4,579,129 - Pf6N2E2_3942 0.33 -0.3 4,579,264 - Pf6N2E2_3942 0.39 -2.4 4,579,264 - Pf6N2E2_3942 0.39 +0.1 4,579,317 + Pf6N2E2_3942 0.41 -0.8 4,579,318 - Pf6N2E2_3942 0.41 -0.0 4,579,318 - Pf6N2E2_3942 0.41 -0.4 4,579,524 + Pf6N2E2_3942 0.50 -0.3 4,579,524 + Pf6N2E2_3942 0.50 -0.9 4,579,525 - Pf6N2E2_3942 0.50 -1.1 4,579,563 + Pf6N2E2_3942 0.52 -0.7 4,579,578 + Pf6N2E2_3942 0.53 +1.1 4,579,578 + Pf6N2E2_3942 0.53 +0.3 4,579,578 + Pf6N2E2_3942 0.53 -1.0 4,579,579 - Pf6N2E2_3942 0.53 -2.0 4,579,845 + Pf6N2E2_3942 0.64 -0.0 4,579,846 - Pf6N2E2_3942 0.65 +0.6 4,579,846 - Pf6N2E2_3942 0.65 -1.9 4,579,926 + Pf6N2E2_3942 0.68 -2.0 4,579,926 + Pf6N2E2_3942 0.68 -1.3 4,579,927 - Pf6N2E2_3942 0.68 -2.0 4,579,927 - Pf6N2E2_3942 0.68 -0.1 4,580,203 - Pf6N2E2_3942 0.80 -0.3 4,580,268 + Pf6N2E2_3942 0.83 -0.6 4,580,313 + Pf6N2E2_3942 0.85 +0.7 4,580,313 + Pf6N2E2_3942 0.85 -1.1 4,580,313 + Pf6N2E2_3942 0.85 -2.7 4,580,313 + Pf6N2E2_3942 0.85 -1.4 4,580,313 + Pf6N2E2_3942 0.85 -1.1 4,580,319 + Pf6N2E2_3942 0.85 -2.6 4,580,319 + Pf6N2E2_3942 0.85 -3.3 4,580,319 + Pf6N2E2_3942 0.85 -2.2 4,580,360 - Pf6N2E2_3942 0.87 -3.0 4,581,032 + Pf6N2E2_3943 0.30 +0.2 4,581,032 + Pf6N2E2_3943 0.30 +2.6 4,581,033 - Pf6N2E2_3943 0.30 -0.1 4,581,136 + Pf6N2E2_3943 0.43 +0.3 4,581,136 + Pf6N2E2_3943 0.43 +0.9 4,581,137 - Pf6N2E2_3943 0.43 -0.3 4,581,137 - Pf6N2E2_3943 0.43 +0.6 4,581,229 + Pf6N2E2_3943 0.55 -0.4 4,581,229 + Pf6N2E2_3943 0.55 +0.1 4,581,229 + Pf6N2E2_3943 0.55 -0.1 4,581,229 + Pf6N2E2_3943 0.55 +0.4 4,581,230 - Pf6N2E2_3943 0.55 -0.4 4,581,262 + Pf6N2E2_3943 0.59 -0.0 4,581,263 - Pf6N2E2_3943 0.59 -0.2 4,581,263 - Pf6N2E2_3943 0.59 -1.1 4,581,263 - Pf6N2E2_3943 0.59 +0.6 4,581,269 + Pf6N2E2_3943 0.60 -0.4 4,581,270 - Pf6N2E2_3943 0.60 +0.9 4,581,478 + Pf6N2E2_3943 0.86 -2.0 4,581,478 + Pf6N2E2_3943 0.86 +0.9 4,581,479 - Pf6N2E2_3943 0.87 +0.9 4,581,540 + +0.9 4,581,540 + -1.8 4,581,540 + +1.6 4,581,540 + -1.5 4,581,541 - +1.0 4,581,541 - -1.3 4,581,574 + +0.2 4,581,575 - +1.1 4,581,575 - -2.3 4,581,591 + -2.3 4,581,592 - +0.1 4,581,640 - -0.3 4,581,647 - -0.3
Or see this region's nucleotide sequence