Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3942

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_3940 and Pf6N2E2_3941 are separated by 143 nucleotidesPf6N2E2_3941 and Pf6N2E2_3942 are separated by 22 nucleotidesPf6N2E2_3942 and Pf6N2E2_3943 are separated by 144 nucleotides Pf6N2E2_3940 - Phosphoserine phosphatase (EC 3.1.3.3), at 4,577,073 to 4,577,729 _3940 Pf6N2E2_3941 - Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-), at 4,577,873 to 4,578,352 _3941 Pf6N2E2_3942 - FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated, at 4,578,375 to 4,580,654 _3942 Pf6N2E2_3943 - COG3332, at 4,580,799 to 4,581,584 _3943 Position (kb) 4578 4579 4580 4581Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4577.491 kb on + strand, within Pf6N2E2_3940at 4577.491 kb on + strand, within Pf6N2E2_3940at 4577.491 kb on + strand, within Pf6N2E2_3940at 4577.491 kb on + strand, within Pf6N2E2_3940at 4577.492 kb on - strand, within Pf6N2E2_3940at 4577.560 kb on + strand, within Pf6N2E2_3940at 4577.560 kb on + strand, within Pf6N2E2_3940at 4577.590 kb on + strand, within Pf6N2E2_3940at 4577.591 kb on - strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.623 kb on + strand, within Pf6N2E2_3940at 4577.624 kb on - strand, within Pf6N2E2_3940at 4577.624 kb on - strand, within Pf6N2E2_3940at 4577.624 kb on - strand, within Pf6N2E2_3940at 4577.624 kb on - strand, within Pf6N2E2_3940at 4577.659 kb on + strand, within Pf6N2E2_3940at 4577.660 kb on - strand, within Pf6N2E2_3940at 4577.660 kb on - strand, within Pf6N2E2_3940at 4577.715 kb on + strandat 4577.736 kb on + strandat 4577.737 kb on - strandat 4577.796 kb on + strandat 4577.796 kb on + strandat 4577.796 kb on + strandat 4577.796 kb on + strandat 4577.796 kb on + strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.797 kb on - strandat 4577.801 kb on + strandat 4577.802 kb on - strandat 4577.918 kb on - strandat 4577.918 kb on - strandat 4578.257 kb on + strand, within Pf6N2E2_3941at 4578.257 kb on + strand, within Pf6N2E2_3941at 4578.257 kb on + strand, within Pf6N2E2_3941at 4578.258 kb on - strand, within Pf6N2E2_3941at 4578.258 kb on - strand, within Pf6N2E2_3941at 4578.258 kb on - strand, within Pf6N2E2_3941at 4578.258 kb on - strand, within Pf6N2E2_3941at 4578.258 kb on - strand, within Pf6N2E2_3941at 4578.303 kb on - strand, within Pf6N2E2_3941at 4578.383 kb on + strandat 4578.383 kb on + strandat 4578.383 kb on + strandat 4578.384 kb on - strandat 4578.410 kb on + strandat 4578.411 kb on - strandat 4578.411 kb on - strandat 4578.411 kb on - strandat 4578.411 kb on - strandat 4578.447 kb on - strandat 4578.451 kb on + strandat 4578.451 kb on + strandat 4578.451 kb on + strandat 4578.452 kb on - strandat 4578.452 kb on - strandat 4578.452 kb on - strandat 4578.452 kb on - strandat 4578.452 kb on - strandat 4578.452 kb on - strandat 4578.452 kb on - strandat 4578.452 kb on - strandat 4578.496 kb on - strandat 4578.666 kb on + strand, within Pf6N2E2_3942at 4578.666 kb on + strand, within Pf6N2E2_3942at 4578.667 kb on - strand, within Pf6N2E2_3942at 4578.693 kb on + strand, within Pf6N2E2_3942at 4579.128 kb on + strand, within Pf6N2E2_3942at 4579.128 kb on + strand, within Pf6N2E2_3942at 4579.128 kb on + strand, within Pf6N2E2_3942at 4579.129 kb on - strand, within Pf6N2E2_3942at 4579.264 kb on - strand, within Pf6N2E2_3942at 4579.264 kb on - strand, within Pf6N2E2_3942at 4579.317 kb on + strand, within Pf6N2E2_3942at 4579.318 kb on - strand, within Pf6N2E2_3942at 4579.318 kb on - strand, within Pf6N2E2_3942at 4579.524 kb on + strand, within Pf6N2E2_3942at 4579.524 kb on + strand, within Pf6N2E2_3942at 4579.525 kb on - strand, within Pf6N2E2_3942at 4579.563 kb on + strand, within Pf6N2E2_3942at 4579.578 kb on + strand, within Pf6N2E2_3942at 4579.578 kb on + strand, within Pf6N2E2_3942at 4579.578 kb on + strand, within Pf6N2E2_3942at 4579.579 kb on - strand, within Pf6N2E2_3942at 4579.845 kb on + strand, within Pf6N2E2_3942at 4579.846 kb on - strand, within Pf6N2E2_3942at 4579.846 kb on - strand, within Pf6N2E2_3942at 4579.926 kb on + strand, within Pf6N2E2_3942at 4579.926 kb on + strand, within Pf6N2E2_3942at 4579.927 kb on - strand, within Pf6N2E2_3942at 4579.927 kb on - strand, within Pf6N2E2_3942at 4580.203 kb on - strand, within Pf6N2E2_3942at 4580.268 kb on + strand, within Pf6N2E2_3942at 4580.313 kb on + strand, within Pf6N2E2_3942at 4580.313 kb on + strand, within Pf6N2E2_3942at 4580.313 kb on + strand, within Pf6N2E2_3942at 4580.313 kb on + strand, within Pf6N2E2_3942at 4580.313 kb on + strand, within Pf6N2E2_3942at 4580.319 kb on + strand, within Pf6N2E2_3942at 4580.319 kb on + strand, within Pf6N2E2_3942at 4580.319 kb on + strand, within Pf6N2E2_3942at 4580.360 kb on - strand, within Pf6N2E2_3942at 4581.032 kb on + strand, within Pf6N2E2_3943at 4581.032 kb on + strand, within Pf6N2E2_3943at 4581.033 kb on - strand, within Pf6N2E2_3943at 4581.136 kb on + strand, within Pf6N2E2_3943at 4581.136 kb on + strand, within Pf6N2E2_3943at 4581.137 kb on - strand, within Pf6N2E2_3943at 4581.137 kb on - strand, within Pf6N2E2_3943at 4581.229 kb on + strand, within Pf6N2E2_3943at 4581.229 kb on + strand, within Pf6N2E2_3943at 4581.229 kb on + strand, within Pf6N2E2_3943at 4581.229 kb on + strand, within Pf6N2E2_3943at 4581.230 kb on - strand, within Pf6N2E2_3943at 4581.262 kb on + strand, within Pf6N2E2_3943at 4581.263 kb on - strand, within Pf6N2E2_3943at 4581.263 kb on - strand, within Pf6N2E2_3943at 4581.263 kb on - strand, within Pf6N2E2_3943at 4581.269 kb on + strand, within Pf6N2E2_3943at 4581.270 kb on - strand, within Pf6N2E2_3943at 4581.478 kb on + strand, within Pf6N2E2_3943at 4581.478 kb on + strand, within Pf6N2E2_3943at 4581.479 kb on - strand, within Pf6N2E2_3943at 4581.540 kb on + strandat 4581.540 kb on + strandat 4581.540 kb on + strandat 4581.540 kb on + strandat 4581.541 kb on - strandat 4581.541 kb on - strandat 4581.574 kb on + strandat 4581.575 kb on - strandat 4581.575 kb on - strandat 4581.591 kb on + strandat 4581.592 kb on - strandat 4581.640 kb on - strandat 4581.647 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
4,577,491 + Pf6N2E2_3940 0.64 -1.4
4,577,491 + Pf6N2E2_3940 0.64 -2.1
4,577,491 + Pf6N2E2_3940 0.64 -3.9
4,577,491 + Pf6N2E2_3940 0.64 -3.4
4,577,492 - Pf6N2E2_3940 0.64 -0.5
4,577,560 + Pf6N2E2_3940 0.74 -3.5
4,577,560 + Pf6N2E2_3940 0.74 -2.7
4,577,590 + Pf6N2E2_3940 0.79 -0.7
4,577,591 - Pf6N2E2_3940 0.79 -0.6
4,577,623 + Pf6N2E2_3940 0.84 -1.6
4,577,623 + Pf6N2E2_3940 0.84 -2.1
4,577,623 + Pf6N2E2_3940 0.84 -1.2
4,577,623 + Pf6N2E2_3940 0.84 -2.8
4,577,623 + Pf6N2E2_3940 0.84 -2.7
4,577,623 + Pf6N2E2_3940 0.84 -2.3
4,577,623 + Pf6N2E2_3940 0.84 -1.9
4,577,623 + Pf6N2E2_3940 0.84 -2.0
4,577,623 + Pf6N2E2_3940 0.84 -2.0
4,577,623 + Pf6N2E2_3940 0.84 -2.1
4,577,623 + Pf6N2E2_3940 0.84 -1.0
4,577,623 + Pf6N2E2_3940 0.84 -2.2
4,577,624 - Pf6N2E2_3940 0.84 -0.8
4,577,624 - Pf6N2E2_3940 0.84 -1.0
4,577,624 - Pf6N2E2_3940 0.84 -2.2
4,577,624 - Pf6N2E2_3940 0.84 -3.4
4,577,659 + Pf6N2E2_3940 0.89 -2.7
4,577,660 - Pf6N2E2_3940 0.89 -2.1
4,577,660 - Pf6N2E2_3940 0.89 -2.6
4,577,715 + -1.0
4,577,736 + -3.5
4,577,737 - -3.6
4,577,796 + +1.5
4,577,796 + -0.2
4,577,796 + -0.5
4,577,796 + -0.7
4,577,796 + +0.6
4,577,797 - +0.8
4,577,797 - -1.8
4,577,797 - +1.0
4,577,797 - +0.5
4,577,797 - -0.7
4,577,797 - +0.8
4,577,797 - +0.3
4,577,797 - +0.8
4,577,801 + -0.0
4,577,802 - +1.6
4,577,918 - -2.6
4,577,918 - -1.9
4,578,257 + Pf6N2E2_3941 0.80 -0.7
4,578,257 + Pf6N2E2_3941 0.80 +0.5
4,578,257 + Pf6N2E2_3941 0.80 +1.2
4,578,258 - Pf6N2E2_3941 0.80 -2.3
4,578,258 - Pf6N2E2_3941 0.80 -1.2
4,578,258 - Pf6N2E2_3941 0.80 -2.9
4,578,258 - Pf6N2E2_3941 0.80 -1.8
4,578,258 - Pf6N2E2_3941 0.80 -2.4
4,578,303 - Pf6N2E2_3941 0.90 -1.4
4,578,383 + -1.8
4,578,383 + -1.6
4,578,383 + -0.7
4,578,384 - -2.9
4,578,410 + +0.4
4,578,411 - +0.3
4,578,411 - -3.5
4,578,411 - -4.1
4,578,411 - -0.1
4,578,447 - -0.4
4,578,451 + -0.9
4,578,451 + -2.4
4,578,451 + -2.2
4,578,452 - -2.5
4,578,452 - -0.3
4,578,452 - -0.9
4,578,452 - +0.3
4,578,452 - -2.0
4,578,452 - -0.3
4,578,452 - -2.3
4,578,452 - -1.2
4,578,496 - -1.6
4,578,666 + Pf6N2E2_3942 0.13 -1.0
4,578,666 + Pf6N2E2_3942 0.13 -1.6
4,578,667 - Pf6N2E2_3942 0.13 +1.5
4,578,693 + Pf6N2E2_3942 0.14 -1.9
4,579,128 + Pf6N2E2_3942 0.33 -3.7
4,579,128 + Pf6N2E2_3942 0.33 +0.3
4,579,128 + Pf6N2E2_3942 0.33 -0.2
4,579,129 - Pf6N2E2_3942 0.33 -0.3
4,579,264 - Pf6N2E2_3942 0.39 -2.4
4,579,264 - Pf6N2E2_3942 0.39 +0.1
4,579,317 + Pf6N2E2_3942 0.41 -0.8
4,579,318 - Pf6N2E2_3942 0.41 -0.0
4,579,318 - Pf6N2E2_3942 0.41 -0.4
4,579,524 + Pf6N2E2_3942 0.50 -0.3
4,579,524 + Pf6N2E2_3942 0.50 -0.9
4,579,525 - Pf6N2E2_3942 0.50 -1.1
4,579,563 + Pf6N2E2_3942 0.52 -0.7
4,579,578 + Pf6N2E2_3942 0.53 +1.1
4,579,578 + Pf6N2E2_3942 0.53 +0.3
4,579,578 + Pf6N2E2_3942 0.53 -1.0
4,579,579 - Pf6N2E2_3942 0.53 -2.0
4,579,845 + Pf6N2E2_3942 0.64 -0.0
4,579,846 - Pf6N2E2_3942 0.65 +0.6
4,579,846 - Pf6N2E2_3942 0.65 -1.9
4,579,926 + Pf6N2E2_3942 0.68 -2.0
4,579,926 + Pf6N2E2_3942 0.68 -1.3
4,579,927 - Pf6N2E2_3942 0.68 -2.0
4,579,927 - Pf6N2E2_3942 0.68 -0.1
4,580,203 - Pf6N2E2_3942 0.80 -0.3
4,580,268 + Pf6N2E2_3942 0.83 -0.6
4,580,313 + Pf6N2E2_3942 0.85 +0.7
4,580,313 + Pf6N2E2_3942 0.85 -1.1
4,580,313 + Pf6N2E2_3942 0.85 -2.7
4,580,313 + Pf6N2E2_3942 0.85 -1.4
4,580,313 + Pf6N2E2_3942 0.85 -1.1
4,580,319 + Pf6N2E2_3942 0.85 -2.6
4,580,319 + Pf6N2E2_3942 0.85 -3.3
4,580,319 + Pf6N2E2_3942 0.85 -2.2
4,580,360 - Pf6N2E2_3942 0.87 -3.0
4,581,032 + Pf6N2E2_3943 0.30 +0.2
4,581,032 + Pf6N2E2_3943 0.30 +2.6
4,581,033 - Pf6N2E2_3943 0.30 -0.1
4,581,136 + Pf6N2E2_3943 0.43 +0.3
4,581,136 + Pf6N2E2_3943 0.43 +0.9
4,581,137 - Pf6N2E2_3943 0.43 -0.3
4,581,137 - Pf6N2E2_3943 0.43 +0.6
4,581,229 + Pf6N2E2_3943 0.55 -0.4
4,581,229 + Pf6N2E2_3943 0.55 +0.1
4,581,229 + Pf6N2E2_3943 0.55 -0.1
4,581,229 + Pf6N2E2_3943 0.55 +0.4
4,581,230 - Pf6N2E2_3943 0.55 -0.4
4,581,262 + Pf6N2E2_3943 0.59 -0.0
4,581,263 - Pf6N2E2_3943 0.59 -0.2
4,581,263 - Pf6N2E2_3943 0.59 -1.1
4,581,263 - Pf6N2E2_3943 0.59 +0.6
4,581,269 + Pf6N2E2_3943 0.60 -0.4
4,581,270 - Pf6N2E2_3943 0.60 +0.9
4,581,478 + Pf6N2E2_3943 0.86 -2.0
4,581,478 + Pf6N2E2_3943 0.86 +0.9
4,581,479 - Pf6N2E2_3943 0.87 +0.9
4,581,540 + +0.9
4,581,540 + -1.8
4,581,540 + +1.6
4,581,540 + -1.5
4,581,541 - +1.0
4,581,541 - -1.3
4,581,574 + +0.2
4,581,575 - +1.1
4,581,575 - -2.3
4,581,591 + -2.3
4,581,592 - +0.1
4,581,640 - -0.3
4,581,647 - -0.3

Or see this region's nucleotide sequence