Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3839

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3837 and Pf6N2E2_3838 are separated by 63 nucleotidesPf6N2E2_3838 and Pf6N2E2_3839 are separated by 9 nucleotidesPf6N2E2_3839 and Pf6N2E2_3840 are separated by 42 nucleotidesPf6N2E2_3840 and Pf6N2E2_3841 overlap by 1 nucleotidesPf6N2E2_3841 and Pf6N2E2_3842 overlap by 1 nucleotides Pf6N2E2_3837 - ABC-type amino acid transport, signal transduction systems, periplasmic component/domain, at 4,470,580 to 4,471,326 _3837 Pf6N2E2_3838 - Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-), at 4,471,390 to 4,472,160 _3838 Pf6N2E2_3839 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 4,472,170 to 4,472,907 _3839 Pf6N2E2_3840 - FIG00956267: hypothetical protein, at 4,472,950 to 4,473,204 _3840 Pf6N2E2_3841 - Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-), at 4,473,204 to 4,473,842 _3841 Pf6N2E2_3842 - Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 4,473,842 to 4,474,435 _3842 Position (kb) 4472 4473Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4471.217 kb on + strand, within Pf6N2E2_3837at 4471.217 kb on + strand, within Pf6N2E2_3837at 4471.217 kb on + strand, within Pf6N2E2_3837at 4471.217 kb on + strand, within Pf6N2E2_3837at 4471.217 kb on + strand, within Pf6N2E2_3837at 4471.218 kb on - strand, within Pf6N2E2_3837at 4471.218 kb on - strand, within Pf6N2E2_3837at 4471.218 kb on - strand, within Pf6N2E2_3837at 4471.218 kb on - strand, within Pf6N2E2_3837at 4471.218 kb on - strand, within Pf6N2E2_3837at 4471.218 kb on - strand, within Pf6N2E2_3837at 4471.218 kb on - strand, within Pf6N2E2_3837at 4471.218 kb on - strand, within Pf6N2E2_3837at 4471.254 kb on + strandat 4471.254 kb on + strandat 4471.255 kb on - strandat 4471.255 kb on - strandat 4471.377 kb on + strandat 4471.377 kb on + strandat 4471.378 kb on - strandat 4471.378 kb on - strandat 4471.378 kb on - strandat 4471.421 kb on + strandat 4471.422 kb on - strandat 4471.422 kb on - strandat 4472.180 kb on + strandat 4472.181 kb on - strandat 4472.181 kb on - strandat 4472.228 kb on + strandat 4472.228 kb on + strandat 4472.229 kb on - strandat 4472.411 kb on + strand, within Pf6N2E2_3839at 4472.412 kb on - strand, within Pf6N2E2_3839at 4472.412 kb on - strand, within Pf6N2E2_3839at 4472.609 kb on + strand, within Pf6N2E2_3839at 4472.630 kb on + strand, within Pf6N2E2_3839at 4472.630 kb on + strand, within Pf6N2E2_3839at 4472.630 kb on + strand, within Pf6N2E2_3839at 4472.631 kb on - strand, within Pf6N2E2_3839at 4472.714 kb on - strand, within Pf6N2E2_3839at 4472.714 kb on - strand, within Pf6N2E2_3839at 4472.752 kb on - strand, within Pf6N2E2_3839at 4472.864 kb on - strandat 4472.864 kb on - strandat 4472.890 kb on - strandat 4472.924 kb on + strandat 4472.925 kb on - strandat 4472.925 kb on - strandat 4472.925 kb on - strandat 4472.930 kb on + strandat 4473.003 kb on + strand, within Pf6N2E2_3840at 4473.004 kb on - strand, within Pf6N2E2_3840at 4473.004 kb on - strand, within Pf6N2E2_3840at 4473.038 kb on + strand, within Pf6N2E2_3840at 4473.039 kb on - strand, within Pf6N2E2_3840at 4473.039 kb on - strand, within Pf6N2E2_3840at 4473.039 kb on - strand, within Pf6N2E2_3840at 4473.039 kb on - strand, within Pf6N2E2_3840at 4473.039 kb on - strand, within Pf6N2E2_3840at 4473.039 kb on - strand, within Pf6N2E2_3840at 4473.041 kb on + strand, within Pf6N2E2_3840at 4473.041 kb on + strand, within Pf6N2E2_3840at 4473.041 kb on + strand, within Pf6N2E2_3840at 4473.332 kb on - strand, within Pf6N2E2_3841at 4473.332 kb on - strand, within Pf6N2E2_3841at 4473.376 kb on + strand, within Pf6N2E2_3841at 4473.377 kb on - strand, within Pf6N2E2_3841at 4473.377 kb on - strand, within Pf6N2E2_3841at 4473.377 kb on - strand, within Pf6N2E2_3841at 4473.377 kb on - strand, within Pf6N2E2_3841at 4473.379 kb on + strand, within Pf6N2E2_3841at 4473.379 kb on + strand, within Pf6N2E2_3841at 4473.380 kb on - strand, within Pf6N2E2_3841at 4473.380 kb on - strand, within Pf6N2E2_3841at 4473.380 kb on - strand, within Pf6N2E2_3841at 4473.380 kb on - strand, within Pf6N2E2_3841at 4473.394 kb on + strand, within Pf6N2E2_3841at 4473.395 kb on - strand, within Pf6N2E2_3841at 4473.606 kb on - strand, within Pf6N2E2_3841at 4473.606 kb on - strand, within Pf6N2E2_3841at 4473.844 kb on - strandat 4473.859 kb on + strandat 4473.859 kb on + strandat 4473.860 kb on - strandat 4473.860 kb on - strandat 4473.860 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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4,471,217 + Pf6N2E2_3837 0.85 -0.6
4,471,217 + Pf6N2E2_3837 0.85 +0.4
4,471,217 + Pf6N2E2_3837 0.85 +1.6
4,471,217 + Pf6N2E2_3837 0.85 +0.1
4,471,217 + Pf6N2E2_3837 0.85 +1.5
4,471,218 - Pf6N2E2_3837 0.85 -3.4
4,471,218 - Pf6N2E2_3837 0.85 +1.0
4,471,218 - Pf6N2E2_3837 0.85 +0.1
4,471,218 - Pf6N2E2_3837 0.85 +0.8
4,471,218 - Pf6N2E2_3837 0.85 +0.9
4,471,218 - Pf6N2E2_3837 0.85 -0.2
4,471,218 - Pf6N2E2_3837 0.85 -2.2
4,471,218 - Pf6N2E2_3837 0.85 -2.6
4,471,254 + +0.7
4,471,254 + +0.3
4,471,255 - +0.4
4,471,255 - +1.7
4,471,377 + +0.5
4,471,377 + +1.3
4,471,378 - +1.2
4,471,378 - -2.0
4,471,378 - +1.2
4,471,421 + -1.6
4,471,422 - -2.3
4,471,422 - -2.5
4,472,180 + -2.5
4,472,181 - +0.1
4,472,181 - -3.3
4,472,228 + -2.1
4,472,228 + -3.3
4,472,229 - -2.4
4,472,411 + Pf6N2E2_3839 0.33 -2.5
4,472,412 - Pf6N2E2_3839 0.33 -1.8
4,472,412 - Pf6N2E2_3839 0.33 -3.3
4,472,609 + Pf6N2E2_3839 0.59 -3.3
4,472,630 + Pf6N2E2_3839 0.62 -2.3
4,472,630 + Pf6N2E2_3839 0.62 -1.9
4,472,630 + Pf6N2E2_3839 0.62 -1.5
4,472,631 - Pf6N2E2_3839 0.62 -2.4
4,472,714 - Pf6N2E2_3839 0.74 -2.6
4,472,714 - Pf6N2E2_3839 0.74 -1.9
4,472,752 - Pf6N2E2_3839 0.79 -3.4
4,472,864 - -2.5
4,472,864 - -3.4
4,472,890 - -0.9
4,472,924 + -1.3
4,472,925 - -2.8
4,472,925 - -4.9
4,472,925 - +0.7
4,472,930 + -3.3
4,473,003 + Pf6N2E2_3840 0.21 -3.3
4,473,004 - Pf6N2E2_3840 0.21 +1.2
4,473,004 - Pf6N2E2_3840 0.21 +1.2
4,473,038 + Pf6N2E2_3840 0.35 -2.2
4,473,039 - Pf6N2E2_3840 0.35 +0.9
4,473,039 - Pf6N2E2_3840 0.35 +0.8
4,473,039 - Pf6N2E2_3840 0.35 +0.4
4,473,039 - Pf6N2E2_3840 0.35 -1.3
4,473,039 - Pf6N2E2_3840 0.35 -4.0
4,473,039 - Pf6N2E2_3840 0.35 -1.6
4,473,041 + Pf6N2E2_3840 0.36 -3.7
4,473,041 + Pf6N2E2_3840 0.36 -0.3
4,473,041 + Pf6N2E2_3840 0.36 -0.6
4,473,332 - Pf6N2E2_3841 0.20 -3.3
4,473,332 - Pf6N2E2_3841 0.20 -2.9
4,473,376 + Pf6N2E2_3841 0.27 -1.8
4,473,377 - Pf6N2E2_3841 0.27 -3.1
4,473,377 - Pf6N2E2_3841 0.27 -3.4
4,473,377 - Pf6N2E2_3841 0.27 -1.0
4,473,377 - Pf6N2E2_3841 0.27 -0.1
4,473,379 + Pf6N2E2_3841 0.27 -1.8
4,473,379 + Pf6N2E2_3841 0.27 -1.8
4,473,380 - Pf6N2E2_3841 0.28 -3.2
4,473,380 - Pf6N2E2_3841 0.28 -1.9
4,473,380 - Pf6N2E2_3841 0.28 -3.8
4,473,380 - Pf6N2E2_3841 0.28 -3.7
4,473,394 + Pf6N2E2_3841 0.30 -1.0
4,473,395 - Pf6N2E2_3841 0.30 +1.8
4,473,606 - Pf6N2E2_3841 0.63 -3.0
4,473,606 - Pf6N2E2_3841 0.63 -3.3
4,473,844 - -4.0
4,473,859 + -2.9
4,473,859 + -3.2
4,473,860 - -3.7
4,473,860 - -0.3
4,473,860 - -3.0

Or see this region's nucleotide sequence