Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3837 and Pf6N2E2_3838 are separated by 63 nucleotides Pf6N2E2_3838 and Pf6N2E2_3839 are separated by 9 nucleotides Pf6N2E2_3839 and Pf6N2E2_3840 are separated by 42 nucleotides Pf6N2E2_3840 and Pf6N2E2_3841 overlap by 1 nucleotides Pf6N2E2_3841 and Pf6N2E2_3842 overlap by 1 nucleotides
Pf6N2E2_3837 - ABC-type amino acid transport, signal transduction systems, periplasmic component/domain, at 4,470,580 to 4,471,326
_3837
Pf6N2E2_3838 - Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-), at 4,471,390 to 4,472,160
_3838
Pf6N2E2_3839 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) , at 4,472,170 to 4,472,907
_3839
Pf6N2E2_3840 - FIG00956267: hypothetical protein, at 4,472,950 to 4,473,204
_3840
Pf6N2E2_3841 - Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-), at 4,473,204 to 4,473,842
_3841
Pf6N2E2_3842 - Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 4,473,842 to 4,474,435
_3842
Position (kb)
4472
4473 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 4471.217 kb on + strand, within Pf6N2E2_3837 at 4471.217 kb on + strand, within Pf6N2E2_3837 at 4471.217 kb on + strand, within Pf6N2E2_3837 at 4471.217 kb on + strand, within Pf6N2E2_3837 at 4471.217 kb on + strand, within Pf6N2E2_3837 at 4471.218 kb on - strand, within Pf6N2E2_3837 at 4471.218 kb on - strand, within Pf6N2E2_3837 at 4471.218 kb on - strand, within Pf6N2E2_3837 at 4471.218 kb on - strand, within Pf6N2E2_3837 at 4471.218 kb on - strand, within Pf6N2E2_3837 at 4471.218 kb on - strand, within Pf6N2E2_3837 at 4471.218 kb on - strand, within Pf6N2E2_3837 at 4471.218 kb on - strand, within Pf6N2E2_3837 at 4471.254 kb on + strand at 4471.254 kb on + strand at 4471.255 kb on - strand at 4471.255 kb on - strand at 4471.377 kb on + strand at 4471.377 kb on + strand at 4471.378 kb on - strand at 4471.378 kb on - strand at 4471.378 kb on - strand at 4471.421 kb on + strand at 4471.422 kb on - strand at 4471.422 kb on - strand at 4472.180 kb on + strand at 4472.181 kb on - strand at 4472.181 kb on - strand at 4472.228 kb on + strand at 4472.228 kb on + strand at 4472.229 kb on - strand at 4472.411 kb on + strand, within Pf6N2E2_3839 at 4472.412 kb on - strand, within Pf6N2E2_3839 at 4472.412 kb on - strand, within Pf6N2E2_3839 at 4472.609 kb on + strand, within Pf6N2E2_3839 at 4472.630 kb on + strand, within Pf6N2E2_3839 at 4472.630 kb on + strand, within Pf6N2E2_3839 at 4472.630 kb on + strand, within Pf6N2E2_3839 at 4472.631 kb on - strand, within Pf6N2E2_3839 at 4472.714 kb on - strand, within Pf6N2E2_3839 at 4472.714 kb on - strand, within Pf6N2E2_3839 at 4472.752 kb on - strand, within Pf6N2E2_3839 at 4472.864 kb on - strand at 4472.864 kb on - strand at 4472.890 kb on - strand at 4472.924 kb on + strand at 4472.925 kb on - strand at 4472.925 kb on - strand at 4472.925 kb on - strand at 4472.930 kb on + strand at 4473.003 kb on + strand, within Pf6N2E2_3840 at 4473.004 kb on - strand, within Pf6N2E2_3840 at 4473.004 kb on - strand, within Pf6N2E2_3840 at 4473.038 kb on + strand, within Pf6N2E2_3840 at 4473.039 kb on - strand, within Pf6N2E2_3840 at 4473.039 kb on - strand, within Pf6N2E2_3840 at 4473.039 kb on - strand, within Pf6N2E2_3840 at 4473.039 kb on - strand, within Pf6N2E2_3840 at 4473.039 kb on - strand, within Pf6N2E2_3840 at 4473.039 kb on - strand, within Pf6N2E2_3840 at 4473.041 kb on + strand, within Pf6N2E2_3840 at 4473.041 kb on + strand, within Pf6N2E2_3840 at 4473.041 kb on + strand, within Pf6N2E2_3840 at 4473.332 kb on - strand, within Pf6N2E2_3841 at 4473.332 kb on - strand, within Pf6N2E2_3841 at 4473.376 kb on + strand, within Pf6N2E2_3841 at 4473.377 kb on - strand, within Pf6N2E2_3841 at 4473.377 kb on - strand, within Pf6N2E2_3841 at 4473.377 kb on - strand, within Pf6N2E2_3841 at 4473.377 kb on - strand, within Pf6N2E2_3841 at 4473.379 kb on + strand, within Pf6N2E2_3841 at 4473.379 kb on + strand, within Pf6N2E2_3841 at 4473.380 kb on - strand, within Pf6N2E2_3841 at 4473.380 kb on - strand, within Pf6N2E2_3841 at 4473.380 kb on - strand, within Pf6N2E2_3841 at 4473.380 kb on - strand, within Pf6N2E2_3841 at 4473.394 kb on + strand, within Pf6N2E2_3841 at 4473.395 kb on - strand, within Pf6N2E2_3841 at 4473.606 kb on - strand, within Pf6N2E2_3841 at 4473.606 kb on - strand, within Pf6N2E2_3841 at 4473.844 kb on - strand at 4473.859 kb on + strand at 4473.859 kb on + strand at 4473.860 kb on - strand at 4473.860 kb on - strand at 4473.860 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 4,471,217 + Pf6N2E2_3837 0.85 -0.6 4,471,217 + Pf6N2E2_3837 0.85 +0.4 4,471,217 + Pf6N2E2_3837 0.85 +1.6 4,471,217 + Pf6N2E2_3837 0.85 +0.1 4,471,217 + Pf6N2E2_3837 0.85 +1.5 4,471,218 - Pf6N2E2_3837 0.85 -3.4 4,471,218 - Pf6N2E2_3837 0.85 +1.0 4,471,218 - Pf6N2E2_3837 0.85 +0.1 4,471,218 - Pf6N2E2_3837 0.85 +0.8 4,471,218 - Pf6N2E2_3837 0.85 +0.9 4,471,218 - Pf6N2E2_3837 0.85 -0.2 4,471,218 - Pf6N2E2_3837 0.85 -2.2 4,471,218 - Pf6N2E2_3837 0.85 -2.6 4,471,254 + +0.7 4,471,254 + +0.3 4,471,255 - +0.4 4,471,255 - +1.7 4,471,377 + +0.5 4,471,377 + +1.3 4,471,378 - +1.2 4,471,378 - -2.0 4,471,378 - +1.2 4,471,421 + -1.6 4,471,422 - -2.3 4,471,422 - -2.5 4,472,180 + -2.5 4,472,181 - +0.1 4,472,181 - -3.3 4,472,228 + -2.1 4,472,228 + -3.3 4,472,229 - -2.4 4,472,411 + Pf6N2E2_3839 0.33 -2.5 4,472,412 - Pf6N2E2_3839 0.33 -1.8 4,472,412 - Pf6N2E2_3839 0.33 -3.3 4,472,609 + Pf6N2E2_3839 0.59 -3.3 4,472,630 + Pf6N2E2_3839 0.62 -2.3 4,472,630 + Pf6N2E2_3839 0.62 -1.9 4,472,630 + Pf6N2E2_3839 0.62 -1.5 4,472,631 - Pf6N2E2_3839 0.62 -2.4 4,472,714 - Pf6N2E2_3839 0.74 -2.6 4,472,714 - Pf6N2E2_3839 0.74 -1.9 4,472,752 - Pf6N2E2_3839 0.79 -3.4 4,472,864 - -2.5 4,472,864 - -3.4 4,472,890 - -0.9 4,472,924 + -1.3 4,472,925 - -2.8 4,472,925 - -4.9 4,472,925 - +0.7 4,472,930 + -3.3 4,473,003 + Pf6N2E2_3840 0.21 -3.3 4,473,004 - Pf6N2E2_3840 0.21 +1.2 4,473,004 - Pf6N2E2_3840 0.21 +1.2 4,473,038 + Pf6N2E2_3840 0.35 -2.2 4,473,039 - Pf6N2E2_3840 0.35 +0.9 4,473,039 - Pf6N2E2_3840 0.35 +0.8 4,473,039 - Pf6N2E2_3840 0.35 +0.4 4,473,039 - Pf6N2E2_3840 0.35 -1.3 4,473,039 - Pf6N2E2_3840 0.35 -4.0 4,473,039 - Pf6N2E2_3840 0.35 -1.6 4,473,041 + Pf6N2E2_3840 0.36 -3.7 4,473,041 + Pf6N2E2_3840 0.36 -0.3 4,473,041 + Pf6N2E2_3840 0.36 -0.6 4,473,332 - Pf6N2E2_3841 0.20 -3.3 4,473,332 - Pf6N2E2_3841 0.20 -2.9 4,473,376 + Pf6N2E2_3841 0.27 -1.8 4,473,377 - Pf6N2E2_3841 0.27 -3.1 4,473,377 - Pf6N2E2_3841 0.27 -3.4 4,473,377 - Pf6N2E2_3841 0.27 -1.0 4,473,377 - Pf6N2E2_3841 0.27 -0.1 4,473,379 + Pf6N2E2_3841 0.27 -1.8 4,473,379 + Pf6N2E2_3841 0.27 -1.8 4,473,380 - Pf6N2E2_3841 0.28 -3.2 4,473,380 - Pf6N2E2_3841 0.28 -1.9 4,473,380 - Pf6N2E2_3841 0.28 -3.8 4,473,380 - Pf6N2E2_3841 0.28 -3.7 4,473,394 + Pf6N2E2_3841 0.30 -1.0 4,473,395 - Pf6N2E2_3841 0.30 +1.8 4,473,606 - Pf6N2E2_3841 0.63 -3.0 4,473,606 - Pf6N2E2_3841 0.63 -3.3 4,473,844 - -4.0 4,473,859 + -2.9 4,473,859 + -3.2 4,473,860 - -3.7 4,473,860 - -0.3 4,473,860 - -3.0
Or see this region's nucleotide sequence