Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3641

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3639 and Pf6N2E2_3640 are separated by 102 nucleotidesPf6N2E2_3640 and Pf6N2E2_3641 overlap by 10 nucleotidesPf6N2E2_3641 and Pf6N2E2_3642 are separated by 214 nucleotidesPf6N2E2_3642 and Pf6N2E2_3643 overlap by 32 nucleotides Pf6N2E2_3639 - 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17), at 4,239,075 to 4,239,911 _3639 Pf6N2E2_3640 - FIG074102: hypothetical protein, at 4,240,014 to 4,240,466 _3640 Pf6N2E2_3641 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 4,240,457 to 4,241,074 _3641 Pf6N2E2_3642 - lipoprotein, putative, at 4,241,289 to 4,242,035 _3642 Pf6N2E2_3643 - Predicted hydroxymethylpyrimidine transporter CytX, at 4,242,004 to 4,243,296 _3643 Position (kb) 4240 4241 4242Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4239.879 kb on + strandat 4239.879 kb on + strandat 4239.880 kb on - strandat 4239.880 kb on - strandat 4239.880 kb on - strandat 4239.880 kb on - strandat 4239.937 kb on + strandat 4239.937 kb on + strandat 4239.937 kb on + strandat 4239.937 kb on + strandat 4239.938 kb on - strandat 4239.938 kb on - strandat 4239.938 kb on - strandat 4239.938 kb on - strandat 4239.938 kb on - strandat 4240.001 kb on - strandat 4240.132 kb on + strand, within Pf6N2E2_3640at 4240.132 kb on + strand, within Pf6N2E2_3640at 4240.132 kb on + strand, within Pf6N2E2_3640at 4240.132 kb on + strand, within Pf6N2E2_3640at 4240.132 kb on + strand, within Pf6N2E2_3640at 4240.132 kb on + strand, within Pf6N2E2_3640at 4240.132 kb on + strand, within Pf6N2E2_3640at 4240.133 kb on - strand, within Pf6N2E2_3640at 4240.133 kb on - strand, within Pf6N2E2_3640at 4240.133 kb on - strand, within Pf6N2E2_3640at 4240.133 kb on - strand, within Pf6N2E2_3640at 4240.133 kb on - strand, within Pf6N2E2_3640at 4240.133 kb on - strand, within Pf6N2E2_3640at 4240.195 kb on + strand, within Pf6N2E2_3640at 4240.196 kb on - strand, within Pf6N2E2_3640at 4240.196 kb on - strand, within Pf6N2E2_3640at 4240.196 kb on - strand, within Pf6N2E2_3640at 4240.270 kb on + strand, within Pf6N2E2_3640at 4240.393 kb on + strand, within Pf6N2E2_3640at 4240.394 kb on - strand, within Pf6N2E2_3640at 4240.394 kb on - strand, within Pf6N2E2_3640at 4240.466 kb on + strandat 4240.592 kb on - strand, within Pf6N2E2_3641at 4240.699 kb on - strand, within Pf6N2E2_3641at 4240.699 kb on - strand, within Pf6N2E2_3641at 4241.101 kb on + strandat 4241.101 kb on + strandat 4241.102 kb on - strandat 4241.102 kb on - strandat 4241.102 kb on - strandat 4241.204 kb on + strandat 4241.204 kb on + strandat 4241.205 kb on - strandat 4241.205 kb on - strandat 4241.205 kb on - strandat 4241.213 kb on + strandat 4241.213 kb on + strandat 4241.214 kb on - strandat 4241.367 kb on + strand, within Pf6N2E2_3642at 4241.610 kb on + strand, within Pf6N2E2_3642at 4241.611 kb on - strand, within Pf6N2E2_3642at 4241.626 kb on + strand, within Pf6N2E2_3642at 4241.627 kb on - strand, within Pf6N2E2_3642at 4241.627 kb on - strand, within Pf6N2E2_3642at 4241.627 kb on - strand, within Pf6N2E2_3642at 4241.627 kb on - strand, within Pf6N2E2_3642at 4241.670 kb on + strand, within Pf6N2E2_3642at 4241.670 kb on + strand, within Pf6N2E2_3642at 4241.671 kb on - strand, within Pf6N2E2_3642at 4241.721 kb on + strand, within Pf6N2E2_3642at 4241.925 kb on + strand, within Pf6N2E2_3642at 4241.925 kb on + strand, within Pf6N2E2_3642at 4241.926 kb on - strand, within Pf6N2E2_3642at 4242.029 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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4,239,879 + -2.5
4,239,879 + +0.3
4,239,880 - +1.0
4,239,880 - +0.4
4,239,880 - -0.8
4,239,880 - +1.7
4,239,937 + +0.4
4,239,937 + +2.1
4,239,937 + +1.1
4,239,937 + -0.3
4,239,938 - -0.8
4,239,938 - +0.7
4,239,938 - +0.9
4,239,938 - -0.9
4,239,938 - -3.8
4,240,001 - +0.2
4,240,132 + Pf6N2E2_3640 0.26 +0.9
4,240,132 + Pf6N2E2_3640 0.26 +0.1
4,240,132 + Pf6N2E2_3640 0.26 +1.1
4,240,132 + Pf6N2E2_3640 0.26 +0.2
4,240,132 + Pf6N2E2_3640 0.26 +0.2
4,240,132 + Pf6N2E2_3640 0.26 +0.5
4,240,132 + Pf6N2E2_3640 0.26 +1.0
4,240,133 - Pf6N2E2_3640 0.26 -0.6
4,240,133 - Pf6N2E2_3640 0.26 -2.2
4,240,133 - Pf6N2E2_3640 0.26 +1.9
4,240,133 - Pf6N2E2_3640 0.26 -2.1
4,240,133 - Pf6N2E2_3640 0.26 +1.0
4,240,133 - Pf6N2E2_3640 0.26 -0.3
4,240,195 + Pf6N2E2_3640 0.40 +0.7
4,240,196 - Pf6N2E2_3640 0.40 +0.7
4,240,196 - Pf6N2E2_3640 0.40 +0.5
4,240,196 - Pf6N2E2_3640 0.40 +0.5
4,240,270 + Pf6N2E2_3640 0.57 +0.9
4,240,393 + Pf6N2E2_3640 0.84 +0.4
4,240,394 - Pf6N2E2_3640 0.84 +1.0
4,240,394 - Pf6N2E2_3640 0.84 -1.3
4,240,466 + -1.6
4,240,592 - Pf6N2E2_3641 0.22 -0.2
4,240,699 - Pf6N2E2_3641 0.39 -2.0
4,240,699 - Pf6N2E2_3641 0.39 -1.7
4,241,101 + -2.4
4,241,101 + -0.6
4,241,102 - +0.5
4,241,102 - +1.2
4,241,102 - +1.4
4,241,204 + -0.2
4,241,204 + -1.7
4,241,205 - -0.3
4,241,205 - +0.7
4,241,205 - -1.2
4,241,213 + -2.0
4,241,213 + +0.3
4,241,214 - -0.2
4,241,367 + Pf6N2E2_3642 0.10 -1.3
4,241,610 + Pf6N2E2_3642 0.43 +0.4
4,241,611 - Pf6N2E2_3642 0.43 +0.5
4,241,626 + Pf6N2E2_3642 0.45 +1.7
4,241,627 - Pf6N2E2_3642 0.45 -2.7
4,241,627 - Pf6N2E2_3642 0.45 -1.0
4,241,627 - Pf6N2E2_3642 0.45 -0.2
4,241,627 - Pf6N2E2_3642 0.45 -2.5
4,241,670 + Pf6N2E2_3642 0.51 -1.5
4,241,670 + Pf6N2E2_3642 0.51 +0.1
4,241,671 - Pf6N2E2_3642 0.51 +1.1
4,241,721 + Pf6N2E2_3642 0.58 -0.6
4,241,925 + Pf6N2E2_3642 0.85 +1.3
4,241,925 + Pf6N2E2_3642 0.85 -3.2
4,241,926 - Pf6N2E2_3642 0.85 -1.1
4,242,029 + +0.6

Or see this region's nucleotide sequence