Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3639 and Pf6N2E2_3640 are separated by 102 nucleotides Pf6N2E2_3640 and Pf6N2E2_3641 overlap by 10 nucleotides Pf6N2E2_3641 and Pf6N2E2_3642 are separated by 214 nucleotides Pf6N2E2_3642 and Pf6N2E2_3643 overlap by 32 nucleotides
Pf6N2E2_3639 - 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17), at 4,239,075 to 4,239,911
_3639
Pf6N2E2_3640 - FIG074102: hypothetical protein, at 4,240,014 to 4,240,466
_3640
Pf6N2E2_3641 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 4,240,457 to 4,241,074
_3641
Pf6N2E2_3642 - lipoprotein, putative, at 4,241,289 to 4,242,035
_3642
Pf6N2E2_3643 - Predicted hydroxymethylpyrimidine transporter CytX, at 4,242,004 to 4,243,296
_3643
Position (kb)
4240
4241
4242 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4239.879 kb on + strand at 4239.879 kb on + strand at 4239.880 kb on - strand at 4239.880 kb on - strand at 4239.880 kb on - strand at 4239.880 kb on - strand at 4239.937 kb on + strand at 4239.937 kb on + strand at 4239.937 kb on + strand at 4239.937 kb on + strand at 4239.938 kb on - strand at 4239.938 kb on - strand at 4239.938 kb on - strand at 4239.938 kb on - strand at 4239.938 kb on - strand at 4240.001 kb on - strand at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.132 kb on + strand, within Pf6N2E2_3640 at 4240.133 kb on - strand, within Pf6N2E2_3640 at 4240.133 kb on - strand, within Pf6N2E2_3640 at 4240.133 kb on - strand, within Pf6N2E2_3640 at 4240.133 kb on - strand, within Pf6N2E2_3640 at 4240.133 kb on - strand, within Pf6N2E2_3640 at 4240.133 kb on - strand, within Pf6N2E2_3640 at 4240.195 kb on + strand, within Pf6N2E2_3640 at 4240.196 kb on - strand, within Pf6N2E2_3640 at 4240.196 kb on - strand, within Pf6N2E2_3640 at 4240.196 kb on - strand, within Pf6N2E2_3640 at 4240.270 kb on + strand, within Pf6N2E2_3640 at 4240.393 kb on + strand, within Pf6N2E2_3640 at 4240.394 kb on - strand, within Pf6N2E2_3640 at 4240.394 kb on - strand, within Pf6N2E2_3640 at 4240.466 kb on + strand at 4240.592 kb on - strand, within Pf6N2E2_3641 at 4240.699 kb on - strand, within Pf6N2E2_3641 at 4240.699 kb on - strand, within Pf6N2E2_3641 at 4241.101 kb on + strand at 4241.101 kb on + strand at 4241.102 kb on - strand at 4241.102 kb on - strand at 4241.102 kb on - strand at 4241.204 kb on + strand at 4241.204 kb on + strand at 4241.205 kb on - strand at 4241.205 kb on - strand at 4241.205 kb on - strand at 4241.213 kb on + strand at 4241.213 kb on + strand at 4241.214 kb on - strand at 4241.367 kb on + strand, within Pf6N2E2_3642 at 4241.610 kb on + strand, within Pf6N2E2_3642 at 4241.611 kb on - strand, within Pf6N2E2_3642 at 4241.626 kb on + strand, within Pf6N2E2_3642 at 4241.627 kb on - strand, within Pf6N2E2_3642 at 4241.627 kb on - strand, within Pf6N2E2_3642 at 4241.627 kb on - strand, within Pf6N2E2_3642 at 4241.627 kb on - strand, within Pf6N2E2_3642 at 4241.670 kb on + strand, within Pf6N2E2_3642 at 4241.670 kb on + strand, within Pf6N2E2_3642 at 4241.671 kb on - strand, within Pf6N2E2_3642 at 4241.721 kb on + strand, within Pf6N2E2_3642 at 4241.925 kb on + strand, within Pf6N2E2_3642 at 4241.925 kb on + strand, within Pf6N2E2_3642 at 4241.926 kb on - strand, within Pf6N2E2_3642 at 4242.029 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 4,239,879 + -2.5 4,239,879 + +0.3 4,239,880 - +1.0 4,239,880 - +0.4 4,239,880 - -0.8 4,239,880 - +1.7 4,239,937 + +0.4 4,239,937 + +2.1 4,239,937 + +1.1 4,239,937 + -0.3 4,239,938 - -0.8 4,239,938 - +0.7 4,239,938 - +0.9 4,239,938 - -0.9 4,239,938 - -3.8 4,240,001 - +0.2 4,240,132 + Pf6N2E2_3640 0.26 +0.9 4,240,132 + Pf6N2E2_3640 0.26 +0.1 4,240,132 + Pf6N2E2_3640 0.26 +1.1 4,240,132 + Pf6N2E2_3640 0.26 +0.2 4,240,132 + Pf6N2E2_3640 0.26 +0.2 4,240,132 + Pf6N2E2_3640 0.26 +0.5 4,240,132 + Pf6N2E2_3640 0.26 +1.0 4,240,133 - Pf6N2E2_3640 0.26 -0.6 4,240,133 - Pf6N2E2_3640 0.26 -2.2 4,240,133 - Pf6N2E2_3640 0.26 +1.9 4,240,133 - Pf6N2E2_3640 0.26 -2.1 4,240,133 - Pf6N2E2_3640 0.26 +1.0 4,240,133 - Pf6N2E2_3640 0.26 -0.3 4,240,195 + Pf6N2E2_3640 0.40 +0.7 4,240,196 - Pf6N2E2_3640 0.40 +0.7 4,240,196 - Pf6N2E2_3640 0.40 +0.5 4,240,196 - Pf6N2E2_3640 0.40 +0.5 4,240,270 + Pf6N2E2_3640 0.57 +0.9 4,240,393 + Pf6N2E2_3640 0.84 +0.4 4,240,394 - Pf6N2E2_3640 0.84 +1.0 4,240,394 - Pf6N2E2_3640 0.84 -1.3 4,240,466 + -1.6 4,240,592 - Pf6N2E2_3641 0.22 -0.2 4,240,699 - Pf6N2E2_3641 0.39 -2.0 4,240,699 - Pf6N2E2_3641 0.39 -1.7 4,241,101 + -2.4 4,241,101 + -0.6 4,241,102 - +0.5 4,241,102 - +1.2 4,241,102 - +1.4 4,241,204 + -0.2 4,241,204 + -1.7 4,241,205 - -0.3 4,241,205 - +0.7 4,241,205 - -1.2 4,241,213 + -2.0 4,241,213 + +0.3 4,241,214 - -0.2 4,241,367 + Pf6N2E2_3642 0.10 -1.3 4,241,610 + Pf6N2E2_3642 0.43 +0.4 4,241,611 - Pf6N2E2_3642 0.43 +0.5 4,241,626 + Pf6N2E2_3642 0.45 +1.7 4,241,627 - Pf6N2E2_3642 0.45 -2.7 4,241,627 - Pf6N2E2_3642 0.45 -1.0 4,241,627 - Pf6N2E2_3642 0.45 -0.2 4,241,627 - Pf6N2E2_3642 0.45 -2.5 4,241,670 + Pf6N2E2_3642 0.51 -1.5 4,241,670 + Pf6N2E2_3642 0.51 +0.1 4,241,671 - Pf6N2E2_3642 0.51 +1.1 4,241,721 + Pf6N2E2_3642 0.58 -0.6 4,241,925 + Pf6N2E2_3642 0.85 +1.3 4,241,925 + Pf6N2E2_3642 0.85 -3.2 4,241,926 - Pf6N2E2_3642 0.85 -1.1 4,242,029 + +0.6
Or see this region's nucleotide sequence