Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_339 and Pf6N2E2_340 are separated by 1 nucleotides Pf6N2E2_340 and Pf6N2E2_341 are separated by 177 nucleotides Pf6N2E2_341 and Pf6N2E2_342 overlap by 4 nucleotides
Pf6N2E2_339 - Glutathione-regulated potassium-efflux system protein KefC, at 405,517 to 407,343
_339
Pf6N2E2_340 - Glutathione-regulated potassium-efflux system ancillary protein KefF, at 407,345 to 407,866
_340
Pf6N2E2_341 - sensor histidine kinase, at 408,044 to 409,390
_341
Pf6N2E2_342 - DNA-binding response regulator, at 409,387 to 410,097
_342
Position (kb) 408
409
410 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 407.188 kb on + strand at 407.189 kb on - strand at 407.189 kb on - strand at 407.239 kb on + strand at 407.240 kb on - strand at 407.240 kb on - strand at 407.240 kb on - strand at 407.240 kb on - strand at 407.240 kb on - strand at 407.243 kb on + strand at 407.244 kb on - strand at 407.309 kb on + strand at 407.309 kb on + strand at 407.309 kb on + strand at 407.310 kb on - strand at 407.310 kb on - strand at 407.310 kb on - strand at 407.379 kb on + strand at 407.379 kb on + strand at 407.380 kb on - strand at 407.380 kb on - strand at 407.380 kb on - strand at 407.380 kb on - strand at 407.380 kb on - strand at 407.421 kb on + strand, within Pf6N2E2_340 at 407.421 kb on + strand, within Pf6N2E2_340 at 407.466 kb on + strand, within Pf6N2E2_340 at 407.466 kb on + strand, within Pf6N2E2_340 at 407.466 kb on + strand, within Pf6N2E2_340 at 407.664 kb on + strand, within Pf6N2E2_340 at 407.670 kb on + strand, within Pf6N2E2_340 at 407.670 kb on + strand, within Pf6N2E2_340 at 407.670 kb on + strand, within Pf6N2E2_340 at 407.752 kb on - strand, within Pf6N2E2_340 at 407.760 kb on + strand, within Pf6N2E2_340 at 407.771 kb on + strand, within Pf6N2E2_340 at 407.771 kb on + strand, within Pf6N2E2_340 at 407.771 kb on + strand, within Pf6N2E2_340 at 407.772 kb on - strand, within Pf6N2E2_340 at 407.772 kb on - strand, within Pf6N2E2_340 at 407.772 kb on - strand, within Pf6N2E2_340 at 407.838 kb on + strand at 407.838 kb on + strand at 407.850 kb on + strand at 407.851 kb on - strand at 407.851 kb on - strand at 407.940 kb on + strand at 408.018 kb on + strand at 408.316 kb on - strand, within Pf6N2E2_341 at 408.316 kb on - strand, within Pf6N2E2_341 at 408.316 kb on - strand, within Pf6N2E2_341 at 408.378 kb on + strand, within Pf6N2E2_341 at 408.378 kb on + strand, within Pf6N2E2_341 at 408.668 kb on + strand, within Pf6N2E2_341 at 409.011 kb on + strand, within Pf6N2E2_341 at 409.012 kb on - strand, within Pf6N2E2_341 at 409.805 kb on + strand, within Pf6N2E2_342 at 410.086 kb on + strand at 410.087 kb on - strand at 410.087 kb on - strand at 410.087 kb on - strand at 410.120 kb on + strand at 410.121 kb on - strand at 410.135 kb on + strand at 410.135 kb on + strand at 410.135 kb on + strand at 410.136 kb on - strand at 410.160 kb on + strand at 410.161 kb on - strand at 410.162 kb on + strand at 410.162 kb on + strand at 410.162 kb on + strand at 410.163 kb on - strand at 410.178 kb on + strand at 410.179 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 407,188 + +0.0 407,189 - +1.4 407,189 - +1.6 407,239 + +1.7 407,240 - -1.1 407,240 - -0.7 407,240 - -1.4 407,240 - -1.6 407,240 - +0.9 407,243 + -3.1 407,244 - -0.9 407,309 + -0.2 407,309 + +2.6 407,309 + +0.0 407,310 - -3.6 407,310 - +1.3 407,310 - -0.8 407,379 + -1.0 407,379 + +0.9 407,380 - +0.9 407,380 - -2.4 407,380 - +0.8 407,380 - -1.6 407,380 - +1.1 407,421 + Pf6N2E2_340 0.15 -1.2 407,421 + Pf6N2E2_340 0.15 -0.8 407,466 + Pf6N2E2_340 0.23 -1.2 407,466 + Pf6N2E2_340 0.23 +0.3 407,466 + Pf6N2E2_340 0.23 +0.1 407,664 + Pf6N2E2_340 0.61 +1.5 407,670 + Pf6N2E2_340 0.62 -2.9 407,670 + Pf6N2E2_340 0.62 +0.0 407,670 + Pf6N2E2_340 0.62 -0.2 407,752 - Pf6N2E2_340 0.78 -1.4 407,760 + Pf6N2E2_340 0.80 -1.5 407,771 + Pf6N2E2_340 0.82 -0.2 407,771 + Pf6N2E2_340 0.82 -2.0 407,771 + Pf6N2E2_340 0.82 -0.3 407,772 - Pf6N2E2_340 0.82 +1.6 407,772 - Pf6N2E2_340 0.82 -0.1 407,772 - Pf6N2E2_340 0.82 +0.8 407,838 + +0.3 407,838 + -0.1 407,850 + -2.1 407,851 - +1.5 407,851 - -0.5 407,940 + +0.3 408,018 + +0.6 408,316 - Pf6N2E2_341 0.20 +0.3 408,316 - Pf6N2E2_341 0.20 -3.3 408,316 - Pf6N2E2_341 0.20 -2.2 408,378 + Pf6N2E2_341 0.25 -2.7 408,378 + Pf6N2E2_341 0.25 -1.7 408,668 + Pf6N2E2_341 0.46 -1.0 409,011 + Pf6N2E2_341 0.72 -0.6 409,012 - Pf6N2E2_341 0.72 -2.8 409,805 + Pf6N2E2_342 0.59 +0.5 410,086 + +1.3 410,087 - -0.8 410,087 - -0.9 410,087 - +0.1 410,120 + +0.4 410,121 - -0.7 410,135 + -0.0 410,135 + -1.6 410,135 + +0.4 410,136 - -1.1 410,160 + +0.3 410,161 - -1.0 410,162 + -0.2 410,162 + +0.4 410,162 + -0.5 410,163 - -0.4 410,178 + -0.4 410,179 - +1.0
Or see this region's nucleotide sequence