Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3351

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3349 and Pf6N2E2_3350 are separated by 194 nucleotidesPf6N2E2_3350 and Pf6N2E2_3351 are separated by 143 nucleotidesPf6N2E2_3351 and Pf6N2E2_3352 are separated by 4 nucleotidesPf6N2E2_3352 and Pf6N2E2_3353 are separated by 159 nucleotides Pf6N2E2_3349 - Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8), at 3,877,057 to 3,879,162 _3349 Pf6N2E2_3350 - SSU ribosomal protein S15p (S13e), at 3,879,357 to 3,879,626 _3350 Pf6N2E2_3351 - tRNA pseudouridine synthase B (EC 4.2.1.70), at 3,879,770 to 3,880,687 _3351 Pf6N2E2_3352 - Ribosome-binding factor A, at 3,880,692 to 3,881,093 _3352 Pf6N2E2_3353 - Translation initiation factor 2, at 3,881,253 to 3,883,772 _3353 Position (kb) 3879 3880 3881Strain fitness (log2 ratio) -3 -2 -1 0 1at 3879.272 kb on - strandat 3879.272 kb on - strandat 3879.848 kb on - strandat 3879.897 kb on - strand, within Pf6N2E2_3351at 3879.919 kb on - strand, within Pf6N2E2_3351at 3880.102 kb on - strand, within Pf6N2E2_3351at 3880.153 kb on - strand, within Pf6N2E2_3351at 3880.153 kb on - strand, within Pf6N2E2_3351at 3880.153 kb on - strand, within Pf6N2E2_3351at 3880.153 kb on - strand, within Pf6N2E2_3351at 3880.190 kb on - strand, within Pf6N2E2_3351at 3880.193 kb on - strand, within Pf6N2E2_3351at 3880.229 kb on - strand, within Pf6N2E2_3351at 3880.253 kb on + strand, within Pf6N2E2_3351at 3880.276 kb on + strand, within Pf6N2E2_3351at 3880.276 kb on + strand, within Pf6N2E2_3351at 3880.277 kb on - strand, within Pf6N2E2_3351at 3880.278 kb on + strand, within Pf6N2E2_3351at 3880.311 kb on + strand, within Pf6N2E2_3351

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,879,272 - +1.4
3,879,272 - -1.0
3,879,848 - -1.0
3,879,897 - Pf6N2E2_3351 0.14 -1.5
3,879,919 - Pf6N2E2_3351 0.16 -1.4
3,880,102 - Pf6N2E2_3351 0.36 -1.9
3,880,153 - Pf6N2E2_3351 0.42 +0.3
3,880,153 - Pf6N2E2_3351 0.42 +0.1
3,880,153 - Pf6N2E2_3351 0.42 -0.7
3,880,153 - Pf6N2E2_3351 0.42 -1.7
3,880,190 - Pf6N2E2_3351 0.46 -3.0
3,880,193 - Pf6N2E2_3351 0.46 -2.9
3,880,229 - Pf6N2E2_3351 0.50 -1.5
3,880,253 + Pf6N2E2_3351 0.53 -2.2
3,880,276 + Pf6N2E2_3351 0.55 +0.6
3,880,276 + Pf6N2E2_3351 0.55 +0.3
3,880,277 - Pf6N2E2_3351 0.55 -1.3
3,880,278 + Pf6N2E2_3351 0.55 -2.5
3,880,311 + Pf6N2E2_3351 0.59 -1.4

Or see this region's nucleotide sequence