Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3346

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3345 and Pf6N2E2_3346 are separated by 226 nucleotidesPf6N2E2_3346 and Pf6N2E2_3347 are separated by 98 nucleotidesPf6N2E2_3347 and Pf6N2E2_3348 are separated by 305 nucleotides Pf6N2E2_3345 - Thymidine phosphorylase (EC 2.4.2.4), at 3,872,299 to 3,874,512 _3345 Pf6N2E2_3346 - Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19), at 3,874,739 to 3,875,587 _3346 Pf6N2E2_3347 - FIG00957702: hypothetical protein, at 3,875,686 to 3,875,991 _3347 Pf6N2E2_3348 - hypothetical protein, at 3,876,297 to 3,876,845 _3348 Position (kb) 3874 3875 3876Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3873.760 kb on + strand, within Pf6N2E2_3345at 3873.760 kb on + strand, within Pf6N2E2_3345at 3873.761 kb on - strand, within Pf6N2E2_3345at 3873.761 kb on - strand, within Pf6N2E2_3345at 3873.875 kb on + strand, within Pf6N2E2_3345at 3873.875 kb on + strand, within Pf6N2E2_3345at 3873.875 kb on + strand, within Pf6N2E2_3345at 3873.875 kb on + strand, within Pf6N2E2_3345at 3873.875 kb on + strand, within Pf6N2E2_3345at 3873.875 kb on + strand, within Pf6N2E2_3345at 3873.875 kb on + strand, within Pf6N2E2_3345at 3873.876 kb on - strand, within Pf6N2E2_3345at 3873.876 kb on - strand, within Pf6N2E2_3345at 3873.876 kb on - strand, within Pf6N2E2_3345at 3873.876 kb on - strand, within Pf6N2E2_3345at 3873.876 kb on - strand, within Pf6N2E2_3345at 3873.876 kb on - strand, within Pf6N2E2_3345at 3873.902 kb on + strand, within Pf6N2E2_3345at 3873.902 kb on + strand, within Pf6N2E2_3345at 3873.903 kb on - strand, within Pf6N2E2_3345at 3873.903 kb on - strand, within Pf6N2E2_3345at 3873.903 kb on - strand, within Pf6N2E2_3345at 3873.952 kb on + strand, within Pf6N2E2_3345at 3873.952 kb on + strand, within Pf6N2E2_3345at 3873.952 kb on + strand, within Pf6N2E2_3345at 3873.952 kb on + strand, within Pf6N2E2_3345at 3873.953 kb on - strand, within Pf6N2E2_3345at 3874.150 kb on + strand, within Pf6N2E2_3345at 3874.150 kb on + strand, within Pf6N2E2_3345at 3874.150 kb on + strand, within Pf6N2E2_3345at 3874.151 kb on - strand, within Pf6N2E2_3345at 3874.151 kb on - strand, within Pf6N2E2_3345at 3874.263 kb on + strand, within Pf6N2E2_3345at 3874.263 kb on + strand, within Pf6N2E2_3345at 3874.264 kb on - strand, within Pf6N2E2_3345at 3874.264 kb on - strand, within Pf6N2E2_3345at 3874.264 kb on - strand, within Pf6N2E2_3345at 3874.298 kb on + strandat 3874.492 kb on + strandat 3874.492 kb on + strandat 3874.492 kb on + strandat 3874.492 kb on + strandat 3874.492 kb on + strandat 3874.492 kb on + strandat 3874.493 kb on - strandat 3874.493 kb on - strandat 3874.493 kb on - strandat 3874.493 kb on - strandat 3874.493 kb on - strandat 3874.493 kb on - strandat 3874.493 kb on - strandat 3874.557 kb on + strandat 3874.557 kb on + strandat 3874.557 kb on + strandat 3874.557 kb on + strandat 3874.558 kb on - strandat 3874.558 kb on - strandat 3874.605 kb on - strandat 3874.644 kb on + strandat 3874.644 kb on + strandat 3874.645 kb on - strandat 3874.645 kb on - strandat 3874.661 kb on - strandat 3874.706 kb on + strandat 3874.706 kb on + strandat 3874.706 kb on + strandat 3874.706 kb on + strandat 3874.706 kb on + strandat 3874.706 kb on + strandat 3874.706 kb on + strandat 3874.706 kb on + strandat 3874.707 kb on - strandat 3874.707 kb on - strandat 3874.707 kb on - strandat 3874.707 kb on - strandat 3874.707 kb on - strandat 3874.707 kb on - strandat 3874.708 kb on + strandat 3874.709 kb on - strandat 3874.749 kb on + strandat 3874.749 kb on + strandat 3874.954 kb on - strand, within Pf6N2E2_3346at 3875.183 kb on + strand, within Pf6N2E2_3346at 3875.183 kb on + strand, within Pf6N2E2_3346at 3875.183 kb on + strand, within Pf6N2E2_3346at 3875.184 kb on - strand, within Pf6N2E2_3346at 3875.184 kb on - strand, within Pf6N2E2_3346at 3875.184 kb on - strand, within Pf6N2E2_3346at 3875.184 kb on - strand, within Pf6N2E2_3346at 3875.184 kb on - strand, within Pf6N2E2_3346at 3875.228 kb on + strand, within Pf6N2E2_3346at 3875.229 kb on - strand, within Pf6N2E2_3346at 3875.229 kb on - strand, within Pf6N2E2_3346at 3875.519 kb on + strandat 3875.519 kb on + strandat 3875.519 kb on + strandat 3875.519 kb on + strandat 3875.519 kb on + strandat 3875.519 kb on + strandat 3875.519 kb on + strandat 3875.520 kb on - strandat 3875.520 kb on - strandat 3875.520 kb on - strandat 3875.520 kb on - strandat 3875.520 kb on - strandat 3875.520 kb on - strandat 3875.520 kb on - strandat 3875.520 kb on - strandat 3875.520 kb on - strandat 3875.581 kb on + strandat 3875.687 kb on + strandat 3875.687 kb on + strandat 3875.688 kb on - strandat 3875.688 kb on - strandat 3875.688 kb on - strandat 3875.688 kb on - strandat 3875.688 kb on - strandat 3875.692 kb on + strandat 3875.701 kb on - strandat 3875.701 kb on - strandat 3875.701 kb on - strandat 3875.714 kb on + strandat 3875.715 kb on - strandat 3875.801 kb on + strand, within Pf6N2E2_3347at 3875.801 kb on + strand, within Pf6N2E2_3347at 3875.802 kb on - strand, within Pf6N2E2_3347at 3875.802 kb on - strand, within Pf6N2E2_3347at 3875.932 kb on + strand, within Pf6N2E2_3347at 3875.932 kb on + strand, within Pf6N2E2_3347at 3875.932 kb on + strand, within Pf6N2E2_3347at 3875.933 kb on - strand, within Pf6N2E2_3347at 3875.933 kb on - strand, within Pf6N2E2_3347at 3875.933 kb on - strand, within Pf6N2E2_3347at 3875.936 kb on + strand, within Pf6N2E2_3347at 3875.936 kb on + strand, within Pf6N2E2_3347at 3875.937 kb on - strand, within Pf6N2E2_3347at 3876.077 kb on + strandat 3876.078 kb on - strandat 3876.145 kb on + strandat 3876.145 kb on + strandat 3876.146 kb on - strandat 3876.146 kb on - strandat 3876.146 kb on - strandat 3876.146 kb on - strandat 3876.146 kb on - strandat 3876.146 kb on - strandat 3876.147 kb on + strandat 3876.147 kb on + strandat 3876.148 kb on - strandat 3876.148 kb on - strandat 3876.169 kb on - strandat 3876.180 kb on + strandat 3876.180 kb on + strandat 3876.180 kb on + strandat 3876.180 kb on + strandat 3876.180 kb on + strandat 3876.180 kb on + strandat 3876.180 kb on + strandat 3876.180 kb on + strandat 3876.180 kb on + strandat 3876.181 kb on - strandat 3876.181 kb on - strandat 3876.181 kb on - strandat 3876.181 kb on - strandat 3876.181 kb on - strandat 3876.181 kb on - strandat 3876.186 kb on + strandat 3876.186 kb on + strandat 3876.186 kb on + strandat 3876.186 kb on + strandat 3876.187 kb on - strandat 3876.187 kb on - strandat 3876.187 kb on - strandat 3876.187 kb on - strandat 3876.209 kb on - strandat 3876.417 kb on + strand, within Pf6N2E2_3348at 3876.417 kb on + strand, within Pf6N2E2_3348at 3876.429 kb on - strand, within Pf6N2E2_3348at 3876.445 kb on - strand, within Pf6N2E2_3348at 3876.462 kb on + strand, within Pf6N2E2_3348at 3876.462 kb on + strand, within Pf6N2E2_3348at 3876.462 kb on + strand, within Pf6N2E2_3348at 3876.462 kb on + strand, within Pf6N2E2_3348at 3876.462 kb on + strand, within Pf6N2E2_3348at 3876.462 kb on + strand, within Pf6N2E2_3348at 3876.463 kb on - strand, within Pf6N2E2_3348at 3876.463 kb on - strand, within Pf6N2E2_3348at 3876.463 kb on - strand, within Pf6N2E2_3348at 3876.463 kb on - strand, within Pf6N2E2_3348at 3876.463 kb on - strand, within Pf6N2E2_3348

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,873,760 + Pf6N2E2_3345 0.66 -1.1
3,873,760 + Pf6N2E2_3345 0.66 +0.9
3,873,761 - Pf6N2E2_3345 0.66 +1.6
3,873,761 - Pf6N2E2_3345 0.66 +0.0
3,873,875 + Pf6N2E2_3345 0.71 +0.5
3,873,875 + Pf6N2E2_3345 0.71 -3.8
3,873,875 + Pf6N2E2_3345 0.71 +0.6
3,873,875 + Pf6N2E2_3345 0.71 +1.2
3,873,875 + Pf6N2E2_3345 0.71 -1.3
3,873,875 + Pf6N2E2_3345 0.71 +1.7
3,873,875 + Pf6N2E2_3345 0.71 +0.3
3,873,876 - Pf6N2E2_3345 0.71 +0.7
3,873,876 - Pf6N2E2_3345 0.71 -0.6
3,873,876 - Pf6N2E2_3345 0.71 +1.1
3,873,876 - Pf6N2E2_3345 0.71 -1.4
3,873,876 - Pf6N2E2_3345 0.71 +1.0
3,873,876 - Pf6N2E2_3345 0.71 +0.8
3,873,902 + Pf6N2E2_3345 0.72 +0.6
3,873,902 + Pf6N2E2_3345 0.72 +1.7
3,873,903 - Pf6N2E2_3345 0.72 -0.5
3,873,903 - Pf6N2E2_3345 0.72 +0.2
3,873,903 - Pf6N2E2_3345 0.72 -2.8
3,873,952 + Pf6N2E2_3345 0.75 +1.0
3,873,952 + Pf6N2E2_3345 0.75 +0.2
3,873,952 + Pf6N2E2_3345 0.75 -2.9
3,873,952 + Pf6N2E2_3345 0.75 -1.3
3,873,953 - Pf6N2E2_3345 0.75 -0.7
3,874,150 + Pf6N2E2_3345 0.84 +0.1
3,874,150 + Pf6N2E2_3345 0.84 -0.3
3,874,150 + Pf6N2E2_3345 0.84 +2.3
3,874,151 - Pf6N2E2_3345 0.84 +0.9
3,874,151 - Pf6N2E2_3345 0.84 +1.6
3,874,263 + Pf6N2E2_3345 0.89 -0.2
3,874,263 + Pf6N2E2_3345 0.89 -2.4
3,874,264 - Pf6N2E2_3345 0.89 -1.3
3,874,264 - Pf6N2E2_3345 0.89 +0.9
3,874,264 - Pf6N2E2_3345 0.89 -1.1
3,874,298 + -1.2
3,874,492 + -1.3
3,874,492 + -0.3
3,874,492 + +0.3
3,874,492 + +0.1
3,874,492 + +3.0
3,874,492 + +1.2
3,874,493 - +0.7
3,874,493 - +1.0
3,874,493 - +1.7
3,874,493 - +1.0
3,874,493 - +1.0
3,874,493 - +0.2
3,874,493 - -4.2
3,874,557 + +1.2
3,874,557 + -0.1
3,874,557 + +0.8
3,874,557 + -0.2
3,874,558 - -0.3
3,874,558 - -0.4
3,874,605 - +1.7
3,874,644 + -0.5
3,874,644 + +0.2
3,874,645 - -0.9
3,874,645 - +0.3
3,874,661 - +0.2
3,874,706 + +0.2
3,874,706 + +0.1
3,874,706 + +0.3
3,874,706 + +0.1
3,874,706 + +1.5
3,874,706 + +0.2
3,874,706 + +0.4
3,874,706 + +1.0
3,874,707 - +2.0
3,874,707 - +0.2
3,874,707 - +2.2
3,874,707 - -1.3
3,874,707 - -2.9
3,874,707 - +0.6
3,874,708 + -2.2
3,874,709 - -1.5
3,874,749 + -0.2
3,874,749 + +0.5
3,874,954 - Pf6N2E2_3346 0.25 -0.7
3,875,183 + Pf6N2E2_3346 0.52 +0.2
3,875,183 + Pf6N2E2_3346 0.52 -2.2
3,875,183 + Pf6N2E2_3346 0.52 -3.5
3,875,184 - Pf6N2E2_3346 0.52 -2.5
3,875,184 - Pf6N2E2_3346 0.52 -2.8
3,875,184 - Pf6N2E2_3346 0.52 -3.9
3,875,184 - Pf6N2E2_3346 0.52 -0.9
3,875,184 - Pf6N2E2_3346 0.52 -1.8
3,875,228 + Pf6N2E2_3346 0.58 -2.3
3,875,229 - Pf6N2E2_3346 0.58 -1.1
3,875,229 - Pf6N2E2_3346 0.58 -1.9
3,875,519 + +0.8
3,875,519 + -2.3
3,875,519 + -0.7
3,875,519 + -2.7
3,875,519 + +0.6
3,875,519 + +0.0
3,875,519 + +0.1
3,875,520 - +1.3
3,875,520 - -1.3
3,875,520 - -2.3
3,875,520 - -1.4
3,875,520 - -1.7
3,875,520 - -0.4
3,875,520 - -2.1
3,875,520 - +0.0
3,875,520 - -0.8
3,875,581 + -1.4
3,875,687 + +1.0
3,875,687 + -1.7
3,875,688 - -1.3
3,875,688 - -0.3
3,875,688 - -0.5
3,875,688 - +0.2
3,875,688 - -1.3
3,875,692 + -0.7
3,875,701 - +1.3
3,875,701 - -0.1
3,875,701 - -0.4
3,875,714 + -0.1
3,875,715 - -0.7
3,875,801 + Pf6N2E2_3347 0.38 +0.9
3,875,801 + Pf6N2E2_3347 0.38 -1.7
3,875,802 - Pf6N2E2_3347 0.38 +1.6
3,875,802 - Pf6N2E2_3347 0.38 -2.1
3,875,932 + Pf6N2E2_3347 0.80 +0.3
3,875,932 + Pf6N2E2_3347 0.80 +0.8
3,875,932 + Pf6N2E2_3347 0.80 -0.5
3,875,933 - Pf6N2E2_3347 0.81 -2.2
3,875,933 - Pf6N2E2_3347 0.81 -0.5
3,875,933 - Pf6N2E2_3347 0.81 -1.2
3,875,936 + Pf6N2E2_3347 0.82 +0.4
3,875,936 + Pf6N2E2_3347 0.82 +1.3
3,875,937 - Pf6N2E2_3347 0.82 +0.7
3,876,077 + -0.1
3,876,078 - +0.7
3,876,145 + -0.3
3,876,145 + +1.1
3,876,146 - -0.1
3,876,146 - -2.8
3,876,146 - +1.1
3,876,146 - -0.0
3,876,146 - -0.2
3,876,146 - -0.5
3,876,147 + +1.1
3,876,147 + +1.8
3,876,148 - +1.0
3,876,148 - -1.3
3,876,169 - +0.3
3,876,180 + +1.5
3,876,180 + -0.1
3,876,180 + +1.4
3,876,180 + +0.1
3,876,180 + -1.7
3,876,180 + -3.1
3,876,180 + +0.9
3,876,180 + -0.2
3,876,180 + +1.2
3,876,181 - +0.3
3,876,181 - -0.3
3,876,181 - -0.3
3,876,181 - -0.4
3,876,181 - +1.1
3,876,181 - -1.4
3,876,186 + +0.1
3,876,186 + +0.3
3,876,186 + +0.2
3,876,186 + +0.1
3,876,187 - +0.7
3,876,187 - +0.6
3,876,187 - -3.6
3,876,187 - -0.1
3,876,209 - +0.5
3,876,417 + Pf6N2E2_3348 0.22 -1.5
3,876,417 + Pf6N2E2_3348 0.22 -1.4
3,876,429 - Pf6N2E2_3348 0.24 +0.6
3,876,445 - Pf6N2E2_3348 0.27 -0.4
3,876,462 + Pf6N2E2_3348 0.30 +0.2
3,876,462 + Pf6N2E2_3348 0.30 +0.3
3,876,462 + Pf6N2E2_3348 0.30 -0.2
3,876,462 + Pf6N2E2_3348 0.30 +1.5
3,876,462 + Pf6N2E2_3348 0.30 +0.5
3,876,462 + Pf6N2E2_3348 0.30 +0.4
3,876,463 - Pf6N2E2_3348 0.30 +1.3
3,876,463 - Pf6N2E2_3348 0.30 +0.0
3,876,463 - Pf6N2E2_3348 0.30 -1.4
3,876,463 - Pf6N2E2_3348 0.30 -2.2
3,876,463 - Pf6N2E2_3348 0.30 -1.1

Or see this region's nucleotide sequence