Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3346

Experiment: Glucuronamide (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucuronamide (N)
3,873,760	+		Pf6N2E2_3345	0.66	-1.1
3,873,760	+		Pf6N2E2_3345	0.66	+0.9
3,873,761	-		Pf6N2E2_3345	0.66	+1.6
3,873,761	-		Pf6N2E2_3345	0.66	+0.0
3,873,875	+		Pf6N2E2_3345	0.71	+0.5
3,873,875	+		Pf6N2E2_3345	0.71	-3.8
3,873,875	+		Pf6N2E2_3345	0.71	+0.6
3,873,875	+		Pf6N2E2_3345	0.71	+1.2
3,873,875	+		Pf6N2E2_3345	0.71	-1.3
3,873,875	+		Pf6N2E2_3345	0.71	+1.7
3,873,875	+		Pf6N2E2_3345	0.71	+0.3
3,873,876	-		Pf6N2E2_3345	0.71	+0.7
3,873,876	-		Pf6N2E2_3345	0.71	-0.6
3,873,876	-		Pf6N2E2_3345	0.71	+1.1
3,873,876	-		Pf6N2E2_3345	0.71	-1.4
3,873,876	-		Pf6N2E2_3345	0.71	+1.0
3,873,876	-		Pf6N2E2_3345	0.71	+0.8
3,873,902	+		Pf6N2E2_3345	0.72	+0.6
3,873,902	+		Pf6N2E2_3345	0.72	+1.7
3,873,903	-		Pf6N2E2_3345	0.72	-0.5
3,873,903	-		Pf6N2E2_3345	0.72	+0.2
3,873,903	-		Pf6N2E2_3345	0.72	-2.8
3,873,952	+		Pf6N2E2_3345	0.75	+1.0
3,873,952	+		Pf6N2E2_3345	0.75	+0.2
3,873,952	+		Pf6N2E2_3345	0.75	-2.9
3,873,952	+		Pf6N2E2_3345	0.75	-1.3
3,873,953	-		Pf6N2E2_3345	0.75	-0.7
3,874,150	+		Pf6N2E2_3345	0.84	+0.1
3,874,150	+		Pf6N2E2_3345	0.84	-0.3
3,874,150	+		Pf6N2E2_3345	0.84	+2.3
3,874,151	-		Pf6N2E2_3345	0.84	+0.9
3,874,151	-		Pf6N2E2_3345	0.84	+1.6
3,874,263	+		Pf6N2E2_3345	0.89	-0.2
3,874,263	+		Pf6N2E2_3345	0.89	-2.4
3,874,264	-		Pf6N2E2_3345	0.89	-1.3
3,874,264	-		Pf6N2E2_3345	0.89	+0.9
3,874,264	-		Pf6N2E2_3345	0.89	-1.1
3,874,298	+				-1.2
3,874,492	+				-1.3
3,874,492	+				-0.3
3,874,492	+				+0.3
3,874,492	+				+0.1
3,874,492	+				+3.0
3,874,492	+				+1.2
3,874,493	-				+0.7
3,874,493	-				+1.0
3,874,493	-				+1.7
3,874,493	-				+1.0
3,874,493	-				+1.0
3,874,493	-				+0.2
3,874,493	-				-4.2
3,874,557	+				+1.2
3,874,557	+				-0.1
3,874,557	+				+0.8
3,874,557	+				-0.2
3,874,558	-				-0.3
3,874,558	-				-0.4
3,874,605	-				+1.7
3,874,644	+				-0.5
3,874,644	+				+0.2
3,874,645	-				-0.9
3,874,645	-				+0.3
3,874,661	-				+0.2
3,874,706	+				+0.2
3,874,706	+				+0.1
3,874,706	+				+0.3
3,874,706	+				+0.1
3,874,706	+				+1.5
3,874,706	+				+0.2
3,874,706	+				+0.4
3,874,706	+				+1.0
3,874,707	-				+2.0
3,874,707	-				+0.2
3,874,707	-				+2.2
3,874,707	-				-1.3
3,874,707	-				-2.9
3,874,707	-				+0.6
3,874,708	+				-2.2
3,874,709	-				-1.5
3,874,749	+				-0.2
3,874,749	+				+0.5
3,874,954	-		Pf6N2E2_3346	0.25	-0.7
3,875,183	+		Pf6N2E2_3346	0.52	+0.2
3,875,183	+		Pf6N2E2_3346	0.52	-2.2
3,875,183	+		Pf6N2E2_3346	0.52	-3.5
3,875,184	-		Pf6N2E2_3346	0.52	-2.5
3,875,184	-		Pf6N2E2_3346	0.52	-2.8
3,875,184	-		Pf6N2E2_3346	0.52	-3.9
3,875,184	-		Pf6N2E2_3346	0.52	-0.9
3,875,184	-		Pf6N2E2_3346	0.52	-1.8
3,875,228	+		Pf6N2E2_3346	0.58	-2.3
3,875,229	-		Pf6N2E2_3346	0.58	-1.1
3,875,229	-		Pf6N2E2_3346	0.58	-1.9
3,875,519	+				+0.8
3,875,519	+				-2.3
3,875,519	+				-0.7
3,875,519	+				-2.7
3,875,519	+				+0.6
3,875,519	+				+0.0
3,875,519	+				+0.1
3,875,520	-				+1.3
3,875,520	-				-1.3
3,875,520	-				-2.3
3,875,520	-				-1.4
3,875,520	-				-1.7
3,875,520	-				-0.4
3,875,520	-				-2.1
3,875,520	-				+0.0
3,875,520	-				-0.8
3,875,581	+				-1.4
3,875,687	+				+1.0
3,875,687	+				-1.7
3,875,688	-				-1.3
3,875,688	-				-0.3
3,875,688	-				-0.5
3,875,688	-				+0.2
3,875,688	-				-1.3
3,875,692	+				-0.7
3,875,701	-				+1.3
3,875,701	-				-0.1
3,875,701	-				-0.4
3,875,714	+				-0.1
3,875,715	-				-0.7
3,875,801	+		Pf6N2E2_3347	0.38	+0.9
3,875,801	+		Pf6N2E2_3347	0.38	-1.7
3,875,802	-		Pf6N2E2_3347	0.38	+1.6
3,875,802	-		Pf6N2E2_3347	0.38	-2.1
3,875,932	+		Pf6N2E2_3347	0.80	+0.3
3,875,932	+		Pf6N2E2_3347	0.80	+0.8
3,875,932	+		Pf6N2E2_3347	0.80	-0.5
3,875,933	-		Pf6N2E2_3347	0.81	-2.2
3,875,933	-		Pf6N2E2_3347	0.81	-0.5
3,875,933	-		Pf6N2E2_3347	0.81	-1.2
3,875,936	+		Pf6N2E2_3347	0.82	+0.4
3,875,936	+		Pf6N2E2_3347	0.82	+1.3
3,875,937	-		Pf6N2E2_3347	0.82	+0.7
3,876,077	+				-0.1
3,876,078	-				+0.7
3,876,145	+				-0.3
3,876,145	+				+1.1
3,876,146	-				-0.1
3,876,146	-				-2.8
3,876,146	-				+1.1
3,876,146	-				-0.0
3,876,146	-				-0.2
3,876,146	-				-0.5
3,876,147	+				+1.1
3,876,147	+				+1.8
3,876,148	-				+1.0
3,876,148	-				-1.3
3,876,169	-				+0.3
3,876,180	+				+1.5
3,876,180	+				-0.1
3,876,180	+				+1.4
3,876,180	+				+0.1
3,876,180	+				-1.7
3,876,180	+				-3.1
3,876,180	+				+0.9
3,876,180	+				-0.2
3,876,180	+				+1.2
3,876,181	-				+0.3
3,876,181	-				-0.3
3,876,181	-				-0.3
3,876,181	-				-0.4
3,876,181	-				+1.1
3,876,181	-				-1.4
3,876,186	+				+0.1
3,876,186	+				+0.3
3,876,186	+				+0.2
3,876,186	+				+0.1
3,876,187	-				+0.7
3,876,187	-				+0.6
3,876,187	-				-3.6
3,876,187	-				-0.1
3,876,209	-				+0.5
3,876,417	+		Pf6N2E2_3348	0.22	-1.5
3,876,417	+		Pf6N2E2_3348	0.22	-1.4
3,876,429	-		Pf6N2E2_3348	0.24	+0.6
3,876,445	-		Pf6N2E2_3348	0.27	-0.4
3,876,462	+		Pf6N2E2_3348	0.30	+0.2
3,876,462	+		Pf6N2E2_3348	0.30	+0.3
3,876,462	+		Pf6N2E2_3348	0.30	-0.2
3,876,462	+		Pf6N2E2_3348	0.30	+1.5
3,876,462	+		Pf6N2E2_3348	0.30	+0.5
3,876,462	+		Pf6N2E2_3348	0.30	+0.4
3,876,463	-		Pf6N2E2_3348	0.30	+1.3
3,876,463	-		Pf6N2E2_3348	0.30	+0.0
3,876,463	-		Pf6N2E2_3348	0.30	-1.4
3,876,463	-		Pf6N2E2_3348	0.30	-2.2
3,876,463	-		Pf6N2E2_3348	0.30	-1.1