Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3345 and Pf6N2E2_3346 are separated by 226 nucleotides Pf6N2E2_3346 and Pf6N2E2_3347 are separated by 98 nucleotides Pf6N2E2_3347 and Pf6N2E2_3348 are separated by 305 nucleotides
Pf6N2E2_3345 - Thymidine phosphorylase (EC 2.4.2.4), at 3,872,299 to 3,874,512
_3345
Pf6N2E2_3346 - Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19), at 3,874,739 to 3,875,587
_3346
Pf6N2E2_3347 - FIG00957702: hypothetical protein, at 3,875,686 to 3,875,991
_3347
Pf6N2E2_3348 - hypothetical protein, at 3,876,297 to 3,876,845
_3348
Position (kb)
3874
3875
3876 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3873.760 kb on + strand, within Pf6N2E2_3345 at 3873.760 kb on + strand, within Pf6N2E2_3345 at 3873.761 kb on - strand, within Pf6N2E2_3345 at 3873.761 kb on - strand, within Pf6N2E2_3345 at 3873.875 kb on + strand, within Pf6N2E2_3345 at 3873.875 kb on + strand, within Pf6N2E2_3345 at 3873.875 kb on + strand, within Pf6N2E2_3345 at 3873.875 kb on + strand, within Pf6N2E2_3345 at 3873.875 kb on + strand, within Pf6N2E2_3345 at 3873.875 kb on + strand, within Pf6N2E2_3345 at 3873.875 kb on + strand, within Pf6N2E2_3345 at 3873.876 kb on - strand, within Pf6N2E2_3345 at 3873.876 kb on - strand, within Pf6N2E2_3345 at 3873.876 kb on - strand, within Pf6N2E2_3345 at 3873.876 kb on - strand, within Pf6N2E2_3345 at 3873.876 kb on - strand, within Pf6N2E2_3345 at 3873.876 kb on - strand, within Pf6N2E2_3345 at 3873.902 kb on + strand, within Pf6N2E2_3345 at 3873.902 kb on + strand, within Pf6N2E2_3345 at 3873.903 kb on - strand, within Pf6N2E2_3345 at 3873.903 kb on - strand, within Pf6N2E2_3345 at 3873.903 kb on - strand, within Pf6N2E2_3345 at 3873.952 kb on + strand, within Pf6N2E2_3345 at 3873.952 kb on + strand, within Pf6N2E2_3345 at 3873.952 kb on + strand, within Pf6N2E2_3345 at 3873.952 kb on + strand, within Pf6N2E2_3345 at 3873.953 kb on - strand, within Pf6N2E2_3345 at 3874.150 kb on + strand, within Pf6N2E2_3345 at 3874.150 kb on + strand, within Pf6N2E2_3345 at 3874.150 kb on + strand, within Pf6N2E2_3345 at 3874.151 kb on - strand, within Pf6N2E2_3345 at 3874.151 kb on - strand, within Pf6N2E2_3345 at 3874.263 kb on + strand, within Pf6N2E2_3345 at 3874.263 kb on + strand, within Pf6N2E2_3345 at 3874.264 kb on - strand, within Pf6N2E2_3345 at 3874.264 kb on - strand, within Pf6N2E2_3345 at 3874.264 kb on - strand, within Pf6N2E2_3345 at 3874.298 kb on + strand at 3874.492 kb on + strand at 3874.492 kb on + strand at 3874.492 kb on + strand at 3874.492 kb on + strand at 3874.492 kb on + strand at 3874.492 kb on + strand at 3874.493 kb on - strand at 3874.493 kb on - strand at 3874.493 kb on - strand at 3874.493 kb on - strand at 3874.493 kb on - strand at 3874.493 kb on - strand at 3874.493 kb on - strand at 3874.557 kb on + strand at 3874.557 kb on + strand at 3874.557 kb on + strand at 3874.557 kb on + strand at 3874.558 kb on - strand at 3874.558 kb on - strand at 3874.605 kb on - strand at 3874.644 kb on + strand at 3874.644 kb on + strand at 3874.645 kb on - strand at 3874.645 kb on - strand at 3874.661 kb on - strand at 3874.706 kb on + strand at 3874.706 kb on + strand at 3874.706 kb on + strand at 3874.706 kb on + strand at 3874.706 kb on + strand at 3874.706 kb on + strand at 3874.706 kb on + strand at 3874.706 kb on + strand at 3874.707 kb on - strand at 3874.707 kb on - strand at 3874.707 kb on - strand at 3874.707 kb on - strand at 3874.707 kb on - strand at 3874.707 kb on - strand at 3874.708 kb on + strand at 3874.709 kb on - strand at 3874.749 kb on + strand at 3874.749 kb on + strand at 3874.954 kb on - strand, within Pf6N2E2_3346 at 3875.183 kb on + strand, within Pf6N2E2_3346 at 3875.183 kb on + strand, within Pf6N2E2_3346 at 3875.183 kb on + strand, within Pf6N2E2_3346 at 3875.184 kb on - strand, within Pf6N2E2_3346 at 3875.184 kb on - strand, within Pf6N2E2_3346 at 3875.184 kb on - strand, within Pf6N2E2_3346 at 3875.184 kb on - strand, within Pf6N2E2_3346 at 3875.184 kb on - strand, within Pf6N2E2_3346 at 3875.228 kb on + strand, within Pf6N2E2_3346 at 3875.229 kb on - strand, within Pf6N2E2_3346 at 3875.229 kb on - strand, within Pf6N2E2_3346 at 3875.519 kb on + strand at 3875.519 kb on + strand at 3875.519 kb on + strand at 3875.519 kb on + strand at 3875.519 kb on + strand at 3875.519 kb on + strand at 3875.519 kb on + strand at 3875.520 kb on - strand at 3875.520 kb on - strand at 3875.520 kb on - strand at 3875.520 kb on - strand at 3875.520 kb on - strand at 3875.520 kb on - strand at 3875.520 kb on - strand at 3875.520 kb on - strand at 3875.520 kb on - strand at 3875.581 kb on + strand at 3875.687 kb on + strand at 3875.687 kb on + strand at 3875.688 kb on - strand at 3875.688 kb on - strand at 3875.688 kb on - strand at 3875.688 kb on - strand at 3875.688 kb on - strand at 3875.692 kb on + strand at 3875.701 kb on - strand at 3875.701 kb on - strand at 3875.701 kb on - strand at 3875.714 kb on + strand at 3875.715 kb on - strand at 3875.801 kb on + strand, within Pf6N2E2_3347 at 3875.801 kb on + strand, within Pf6N2E2_3347 at 3875.802 kb on - strand, within Pf6N2E2_3347 at 3875.802 kb on - strand, within Pf6N2E2_3347 at 3875.932 kb on + strand, within Pf6N2E2_3347 at 3875.932 kb on + strand, within Pf6N2E2_3347 at 3875.932 kb on + strand, within Pf6N2E2_3347 at 3875.933 kb on - strand, within Pf6N2E2_3347 at 3875.933 kb on - strand, within Pf6N2E2_3347 at 3875.933 kb on - strand, within Pf6N2E2_3347 at 3875.936 kb on + strand, within Pf6N2E2_3347 at 3875.936 kb on + strand, within Pf6N2E2_3347 at 3875.937 kb on - strand, within Pf6N2E2_3347 at 3876.077 kb on + strand at 3876.078 kb on - strand at 3876.145 kb on + strand at 3876.145 kb on + strand at 3876.146 kb on - strand at 3876.146 kb on - strand at 3876.146 kb on - strand at 3876.146 kb on - strand at 3876.146 kb on - strand at 3876.146 kb on - strand at 3876.147 kb on + strand at 3876.147 kb on + strand at 3876.148 kb on - strand at 3876.148 kb on - strand at 3876.169 kb on - strand at 3876.180 kb on + strand at 3876.180 kb on + strand at 3876.180 kb on + strand at 3876.180 kb on + strand at 3876.180 kb on + strand at 3876.180 kb on + strand at 3876.180 kb on + strand at 3876.180 kb on + strand at 3876.180 kb on + strand at 3876.181 kb on - strand at 3876.181 kb on - strand at 3876.181 kb on - strand at 3876.181 kb on - strand at 3876.181 kb on - strand at 3876.181 kb on - strand at 3876.186 kb on + strand at 3876.186 kb on + strand at 3876.186 kb on + strand at 3876.186 kb on + strand at 3876.187 kb on - strand at 3876.187 kb on - strand at 3876.187 kb on - strand at 3876.187 kb on - strand at 3876.209 kb on - strand at 3876.417 kb on + strand, within Pf6N2E2_3348 at 3876.417 kb on + strand, within Pf6N2E2_3348 at 3876.429 kb on - strand, within Pf6N2E2_3348 at 3876.445 kb on - strand, within Pf6N2E2_3348 at 3876.462 kb on + strand, within Pf6N2E2_3348 at 3876.462 kb on + strand, within Pf6N2E2_3348 at 3876.462 kb on + strand, within Pf6N2E2_3348 at 3876.462 kb on + strand, within Pf6N2E2_3348 at 3876.462 kb on + strand, within Pf6N2E2_3348 at 3876.462 kb on + strand, within Pf6N2E2_3348 at 3876.463 kb on - strand, within Pf6N2E2_3348 at 3876.463 kb on - strand, within Pf6N2E2_3348 at 3876.463 kb on - strand, within Pf6N2E2_3348 at 3876.463 kb on - strand, within Pf6N2E2_3348 at 3876.463 kb on - strand, within Pf6N2E2_3348
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,873,760 + Pf6N2E2_3345 0.66 -1.1 3,873,760 + Pf6N2E2_3345 0.66 +0.9 3,873,761 - Pf6N2E2_3345 0.66 +1.6 3,873,761 - Pf6N2E2_3345 0.66 +0.0 3,873,875 + Pf6N2E2_3345 0.71 +0.5 3,873,875 + Pf6N2E2_3345 0.71 -3.8 3,873,875 + Pf6N2E2_3345 0.71 +0.6 3,873,875 + Pf6N2E2_3345 0.71 +1.2 3,873,875 + Pf6N2E2_3345 0.71 -1.3 3,873,875 + Pf6N2E2_3345 0.71 +1.7 3,873,875 + Pf6N2E2_3345 0.71 +0.3 3,873,876 - Pf6N2E2_3345 0.71 +0.7 3,873,876 - Pf6N2E2_3345 0.71 -0.6 3,873,876 - Pf6N2E2_3345 0.71 +1.1 3,873,876 - Pf6N2E2_3345 0.71 -1.4 3,873,876 - Pf6N2E2_3345 0.71 +1.0 3,873,876 - Pf6N2E2_3345 0.71 +0.8 3,873,902 + Pf6N2E2_3345 0.72 +0.6 3,873,902 + Pf6N2E2_3345 0.72 +1.7 3,873,903 - Pf6N2E2_3345 0.72 -0.5 3,873,903 - Pf6N2E2_3345 0.72 +0.2 3,873,903 - Pf6N2E2_3345 0.72 -2.8 3,873,952 + Pf6N2E2_3345 0.75 +1.0 3,873,952 + Pf6N2E2_3345 0.75 +0.2 3,873,952 + Pf6N2E2_3345 0.75 -2.9 3,873,952 + Pf6N2E2_3345 0.75 -1.3 3,873,953 - Pf6N2E2_3345 0.75 -0.7 3,874,150 + Pf6N2E2_3345 0.84 +0.1 3,874,150 + Pf6N2E2_3345 0.84 -0.3 3,874,150 + Pf6N2E2_3345 0.84 +2.3 3,874,151 - Pf6N2E2_3345 0.84 +0.9 3,874,151 - Pf6N2E2_3345 0.84 +1.6 3,874,263 + Pf6N2E2_3345 0.89 -0.2 3,874,263 + Pf6N2E2_3345 0.89 -2.4 3,874,264 - Pf6N2E2_3345 0.89 -1.3 3,874,264 - Pf6N2E2_3345 0.89 +0.9 3,874,264 - Pf6N2E2_3345 0.89 -1.1 3,874,298 + -1.2 3,874,492 + -1.3 3,874,492 + -0.3 3,874,492 + +0.3 3,874,492 + +0.1 3,874,492 + +3.0 3,874,492 + +1.2 3,874,493 - +0.7 3,874,493 - +1.0 3,874,493 - +1.7 3,874,493 - +1.0 3,874,493 - +1.0 3,874,493 - +0.2 3,874,493 - -4.2 3,874,557 + +1.2 3,874,557 + -0.1 3,874,557 + +0.8 3,874,557 + -0.2 3,874,558 - -0.3 3,874,558 - -0.4 3,874,605 - +1.7 3,874,644 + -0.5 3,874,644 + +0.2 3,874,645 - -0.9 3,874,645 - +0.3 3,874,661 - +0.2 3,874,706 + +0.2 3,874,706 + +0.1 3,874,706 + +0.3 3,874,706 + +0.1 3,874,706 + +1.5 3,874,706 + +0.2 3,874,706 + +0.4 3,874,706 + +1.0 3,874,707 - +2.0 3,874,707 - +0.2 3,874,707 - +2.2 3,874,707 - -1.3 3,874,707 - -2.9 3,874,707 - +0.6 3,874,708 + -2.2 3,874,709 - -1.5 3,874,749 + -0.2 3,874,749 + +0.5 3,874,954 - Pf6N2E2_3346 0.25 -0.7 3,875,183 + Pf6N2E2_3346 0.52 +0.2 3,875,183 + Pf6N2E2_3346 0.52 -2.2 3,875,183 + Pf6N2E2_3346 0.52 -3.5 3,875,184 - Pf6N2E2_3346 0.52 -2.5 3,875,184 - Pf6N2E2_3346 0.52 -2.8 3,875,184 - Pf6N2E2_3346 0.52 -3.9 3,875,184 - Pf6N2E2_3346 0.52 -0.9 3,875,184 - Pf6N2E2_3346 0.52 -1.8 3,875,228 + Pf6N2E2_3346 0.58 -2.3 3,875,229 - Pf6N2E2_3346 0.58 -1.1 3,875,229 - Pf6N2E2_3346 0.58 -1.9 3,875,519 + +0.8 3,875,519 + -2.3 3,875,519 + -0.7 3,875,519 + -2.7 3,875,519 + +0.6 3,875,519 + +0.0 3,875,519 + +0.1 3,875,520 - +1.3 3,875,520 - -1.3 3,875,520 - -2.3 3,875,520 - -1.4 3,875,520 - -1.7 3,875,520 - -0.4 3,875,520 - -2.1 3,875,520 - +0.0 3,875,520 - -0.8 3,875,581 + -1.4 3,875,687 + +1.0 3,875,687 + -1.7 3,875,688 - -1.3 3,875,688 - -0.3 3,875,688 - -0.5 3,875,688 - +0.2 3,875,688 - -1.3 3,875,692 + -0.7 3,875,701 - +1.3 3,875,701 - -0.1 3,875,701 - -0.4 3,875,714 + -0.1 3,875,715 - -0.7 3,875,801 + Pf6N2E2_3347 0.38 +0.9 3,875,801 + Pf6N2E2_3347 0.38 -1.7 3,875,802 - Pf6N2E2_3347 0.38 +1.6 3,875,802 - Pf6N2E2_3347 0.38 -2.1 3,875,932 + Pf6N2E2_3347 0.80 +0.3 3,875,932 + Pf6N2E2_3347 0.80 +0.8 3,875,932 + Pf6N2E2_3347 0.80 -0.5 3,875,933 - Pf6N2E2_3347 0.81 -2.2 3,875,933 - Pf6N2E2_3347 0.81 -0.5 3,875,933 - Pf6N2E2_3347 0.81 -1.2 3,875,936 + Pf6N2E2_3347 0.82 +0.4 3,875,936 + Pf6N2E2_3347 0.82 +1.3 3,875,937 - Pf6N2E2_3347 0.82 +0.7 3,876,077 + -0.1 3,876,078 - +0.7 3,876,145 + -0.3 3,876,145 + +1.1 3,876,146 - -0.1 3,876,146 - -2.8 3,876,146 - +1.1 3,876,146 - -0.0 3,876,146 - -0.2 3,876,146 - -0.5 3,876,147 + +1.1 3,876,147 + +1.8 3,876,148 - +1.0 3,876,148 - -1.3 3,876,169 - +0.3 3,876,180 + +1.5 3,876,180 + -0.1 3,876,180 + +1.4 3,876,180 + +0.1 3,876,180 + -1.7 3,876,180 + -3.1 3,876,180 + +0.9 3,876,180 + -0.2 3,876,180 + +1.2 3,876,181 - +0.3 3,876,181 - -0.3 3,876,181 - -0.3 3,876,181 - -0.4 3,876,181 - +1.1 3,876,181 - -1.4 3,876,186 + +0.1 3,876,186 + +0.3 3,876,186 + +0.2 3,876,186 + +0.1 3,876,187 - +0.7 3,876,187 - +0.6 3,876,187 - -3.6 3,876,187 - -0.1 3,876,209 - +0.5 3,876,417 + Pf6N2E2_3348 0.22 -1.5 3,876,417 + Pf6N2E2_3348 0.22 -1.4 3,876,429 - Pf6N2E2_3348 0.24 +0.6 3,876,445 - Pf6N2E2_3348 0.27 -0.4 3,876,462 + Pf6N2E2_3348 0.30 +0.2 3,876,462 + Pf6N2E2_3348 0.30 +0.3 3,876,462 + Pf6N2E2_3348 0.30 -0.2 3,876,462 + Pf6N2E2_3348 0.30 +1.5 3,876,462 + Pf6N2E2_3348 0.30 +0.5 3,876,462 + Pf6N2E2_3348 0.30 +0.4 3,876,463 - Pf6N2E2_3348 0.30 +1.3 3,876,463 - Pf6N2E2_3348 0.30 +0.0 3,876,463 - Pf6N2E2_3348 0.30 -1.4 3,876,463 - Pf6N2E2_3348 0.30 -2.2 3,876,463 - Pf6N2E2_3348 0.30 -1.1
Or see this region's nucleotide sequence