Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3269 and Pf6N2E2_3270 are separated by 2 nucleotides Pf6N2E2_3270 and Pf6N2E2_3271 are separated by 15 nucleotides Pf6N2E2_3271 and Pf6N2E2_3272 are separated by 268 nucleotides Pf6N2E2_3272 and Pf6N2E2_3273 are separated by 4 nucleotides
Pf6N2E2_3269 - PTS IIA-like nitrogen-regulatory protein PtsN, at 3,775,211 to 3,775,633
_3269
Pf6N2E2_3270 - Hypothetical ATP-binding protein UPF0042, contains P-loop, at 3,775,636 to 3,776,493
_3270
Pf6N2E2_3271 - Phosphocarrier protein, nitrogen regulation associated, at 3,776,509 to 3,776,784
_3271
Pf6N2E2_3272 - Metal transporter, ZIP family, at 3,777,053 to 3,777,433
_3272
Pf6N2E2_3273 - Metal transporter, ZIP family, at 3,777,438 to 3,777,908
_3273
Position (kb)
3776
3777 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3775.631 kb on + strand at 3775.714 kb on + strand at 3775.714 kb on + strand at 3775.714 kb on + strand at 3775.714 kb on + strand at 3775.714 kb on + strand at 3775.715 kb on - strand at 3775.715 kb on - strand at 3775.822 kb on - strand, within Pf6N2E2_3270 at 3775.822 kb on - strand, within Pf6N2E2_3270 at 3775.881 kb on + strand, within Pf6N2E2_3270 at 3775.900 kb on + strand, within Pf6N2E2_3270 at 3775.901 kb on - strand, within Pf6N2E2_3270 at 3776.016 kb on - strand, within Pf6N2E2_3270 at 3776.016 kb on - strand, within Pf6N2E2_3270 at 3776.055 kb on + strand, within Pf6N2E2_3270 at 3776.055 kb on + strand, within Pf6N2E2_3270 at 3776.056 kb on - strand, within Pf6N2E2_3270 at 3776.306 kb on - strand, within Pf6N2E2_3270 at 3776.324 kb on - strand, within Pf6N2E2_3270 at 3776.369 kb on - strand, within Pf6N2E2_3270 at 3776.369 kb on - strand, within Pf6N2E2_3270 at 3776.392 kb on - strand, within Pf6N2E2_3270 at 3776.491 kb on + strand at 3776.492 kb on - strand at 3776.647 kb on - strand, within Pf6N2E2_3271 at 3776.647 kb on - strand, within Pf6N2E2_3271 at 3776.764 kb on + strand at 3776.765 kb on - strand at 3776.765 kb on - strand at 3776.783 kb on - strand at 3776.783 kb on - strand at 3776.909 kb on - strand at 3777.516 kb on + strand, within Pf6N2E2_3273 at 3777.559 kb on + strand, within Pf6N2E2_3273 at 3777.559 kb on + strand, within Pf6N2E2_3273 at 3777.559 kb on + strand, within Pf6N2E2_3273 at 3777.559 kb on + strand, within Pf6N2E2_3273 at 3777.560 kb on - strand, within Pf6N2E2_3273 at 3777.560 kb on - strand, within Pf6N2E2_3273 at 3777.708 kb on + strand, within Pf6N2E2_3273 at 3777.709 kb on - strand, within Pf6N2E2_3273
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,775,631 + +1.7 3,775,714 + -1.2 3,775,714 + +0.6 3,775,714 + -0.8 3,775,714 + +2.0 3,775,714 + -0.8 3,775,715 - -2.0 3,775,715 - -2.4 3,775,822 - Pf6N2E2_3270 0.22 +1.2 3,775,822 - Pf6N2E2_3270 0.22 +2.9 3,775,881 + Pf6N2E2_3270 0.29 +2.5 3,775,900 + Pf6N2E2_3270 0.31 -0.8 3,775,901 - Pf6N2E2_3270 0.31 +0.2 3,776,016 - Pf6N2E2_3270 0.44 +0.5 3,776,016 - Pf6N2E2_3270 0.44 +1.7 3,776,055 + Pf6N2E2_3270 0.49 -0.9 3,776,055 + Pf6N2E2_3270 0.49 +0.2 3,776,056 - Pf6N2E2_3270 0.49 -0.8 3,776,306 - Pf6N2E2_3270 0.78 -2.0 3,776,324 - Pf6N2E2_3270 0.80 -0.4 3,776,369 - Pf6N2E2_3270 0.85 +0.7 3,776,369 - Pf6N2E2_3270 0.85 -0.2 3,776,392 - Pf6N2E2_3270 0.88 -2.9 3,776,491 + -0.6 3,776,492 - +0.2 3,776,647 - Pf6N2E2_3271 0.50 -0.7 3,776,647 - Pf6N2E2_3271 0.50 -2.2 3,776,764 + -0.8 3,776,765 - -0.7 3,776,765 - +0.3 3,776,783 - +0.8 3,776,783 - -0.4 3,776,909 - -0.5 3,777,516 + Pf6N2E2_3273 0.17 -0.8 3,777,559 + Pf6N2E2_3273 0.26 +0.1 3,777,559 + Pf6N2E2_3273 0.26 +0.7 3,777,559 + Pf6N2E2_3273 0.26 +1.6 3,777,559 + Pf6N2E2_3273 0.26 +0.6 3,777,560 - Pf6N2E2_3273 0.26 -0.7 3,777,560 - Pf6N2E2_3273 0.26 +0.9 3,777,708 + Pf6N2E2_3273 0.57 +0.6 3,777,709 - Pf6N2E2_3273 0.58 -2.4
Or see this region's nucleotide sequence