Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3271

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3269 and Pf6N2E2_3270 are separated by 2 nucleotidesPf6N2E2_3270 and Pf6N2E2_3271 are separated by 15 nucleotidesPf6N2E2_3271 and Pf6N2E2_3272 are separated by 268 nucleotidesPf6N2E2_3272 and Pf6N2E2_3273 are separated by 4 nucleotides Pf6N2E2_3269 - PTS IIA-like nitrogen-regulatory protein PtsN, at 3,775,211 to 3,775,633 _3269 Pf6N2E2_3270 - Hypothetical ATP-binding protein UPF0042, contains P-loop, at 3,775,636 to 3,776,493 _3270 Pf6N2E2_3271 - Phosphocarrier protein, nitrogen regulation associated, at 3,776,509 to 3,776,784 _3271 Pf6N2E2_3272 - Metal transporter, ZIP family, at 3,777,053 to 3,777,433 _3272 Pf6N2E2_3273 - Metal transporter, ZIP family, at 3,777,438 to 3,777,908 _3273 Position (kb) 3776 3777Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3775.631 kb on + strandat 3775.714 kb on + strandat 3775.714 kb on + strandat 3775.714 kb on + strandat 3775.714 kb on + strandat 3775.714 kb on + strandat 3775.715 kb on - strandat 3775.715 kb on - strandat 3775.822 kb on - strand, within Pf6N2E2_3270at 3775.822 kb on - strand, within Pf6N2E2_3270at 3775.881 kb on + strand, within Pf6N2E2_3270at 3775.900 kb on + strand, within Pf6N2E2_3270at 3775.901 kb on - strand, within Pf6N2E2_3270at 3776.016 kb on - strand, within Pf6N2E2_3270at 3776.016 kb on - strand, within Pf6N2E2_3270at 3776.055 kb on + strand, within Pf6N2E2_3270at 3776.055 kb on + strand, within Pf6N2E2_3270at 3776.056 kb on - strand, within Pf6N2E2_3270at 3776.306 kb on - strand, within Pf6N2E2_3270at 3776.324 kb on - strand, within Pf6N2E2_3270at 3776.369 kb on - strand, within Pf6N2E2_3270at 3776.369 kb on - strand, within Pf6N2E2_3270at 3776.392 kb on - strand, within Pf6N2E2_3270at 3776.491 kb on + strandat 3776.492 kb on - strandat 3776.647 kb on - strand, within Pf6N2E2_3271at 3776.647 kb on - strand, within Pf6N2E2_3271at 3776.764 kb on + strandat 3776.765 kb on - strandat 3776.765 kb on - strandat 3776.783 kb on - strandat 3776.783 kb on - strandat 3776.909 kb on - strandat 3777.516 kb on + strand, within Pf6N2E2_3273at 3777.559 kb on + strand, within Pf6N2E2_3273at 3777.559 kb on + strand, within Pf6N2E2_3273at 3777.559 kb on + strand, within Pf6N2E2_3273at 3777.559 kb on + strand, within Pf6N2E2_3273at 3777.560 kb on - strand, within Pf6N2E2_3273at 3777.560 kb on - strand, within Pf6N2E2_3273at 3777.708 kb on + strand, within Pf6N2E2_3273at 3777.709 kb on - strand, within Pf6N2E2_3273

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,775,631 + +1.7
3,775,714 + -1.2
3,775,714 + +0.6
3,775,714 + -0.8
3,775,714 + +2.0
3,775,714 + -0.8
3,775,715 - -2.0
3,775,715 - -2.4
3,775,822 - Pf6N2E2_3270 0.22 +1.2
3,775,822 - Pf6N2E2_3270 0.22 +2.9
3,775,881 + Pf6N2E2_3270 0.29 +2.5
3,775,900 + Pf6N2E2_3270 0.31 -0.8
3,775,901 - Pf6N2E2_3270 0.31 +0.2
3,776,016 - Pf6N2E2_3270 0.44 +0.5
3,776,016 - Pf6N2E2_3270 0.44 +1.7
3,776,055 + Pf6N2E2_3270 0.49 -0.9
3,776,055 + Pf6N2E2_3270 0.49 +0.2
3,776,056 - Pf6N2E2_3270 0.49 -0.8
3,776,306 - Pf6N2E2_3270 0.78 -2.0
3,776,324 - Pf6N2E2_3270 0.80 -0.4
3,776,369 - Pf6N2E2_3270 0.85 +0.7
3,776,369 - Pf6N2E2_3270 0.85 -0.2
3,776,392 - Pf6N2E2_3270 0.88 -2.9
3,776,491 + -0.6
3,776,492 - +0.2
3,776,647 - Pf6N2E2_3271 0.50 -0.7
3,776,647 - Pf6N2E2_3271 0.50 -2.2
3,776,764 + -0.8
3,776,765 - -0.7
3,776,765 - +0.3
3,776,783 - +0.8
3,776,783 - -0.4
3,776,909 - -0.5
3,777,516 + Pf6N2E2_3273 0.17 -0.8
3,777,559 + Pf6N2E2_3273 0.26 +0.1
3,777,559 + Pf6N2E2_3273 0.26 +0.7
3,777,559 + Pf6N2E2_3273 0.26 +1.6
3,777,559 + Pf6N2E2_3273 0.26 +0.6
3,777,560 - Pf6N2E2_3273 0.26 -0.7
3,777,560 - Pf6N2E2_3273 0.26 +0.9
3,777,708 + Pf6N2E2_3273 0.57 +0.6
3,777,709 - Pf6N2E2_3273 0.58 -2.4

Or see this region's nucleotide sequence