Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3257

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3254 and Pf6N2E2_3255 are separated by 22 nucleotidesPf6N2E2_3255 and Pf6N2E2_3256 are separated by 223 nucleotidesPf6N2E2_3256 and Pf6N2E2_3257 overlap by 4 nucleotidesPf6N2E2_3257 and Pf6N2E2_3258 are separated by 11 nucleotidesPf6N2E2_3258 and Pf6N2E2_3259 overlap by 1 nucleotides Pf6N2E2_3254 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7), at 3,764,696 to 3,765,961 _3254 Pf6N2E2_3255 - YrbA protein, at 3,765,984 to 3,766,223 _3255 Pf6N2E2_3256 - Uncharacterized protein YrbB, at 3,766,447 to 3,766,764 _3256 Pf6N2E2_3257 - Uncharacterized ABC transporter, auxiliary component YrbC, at 3,766,761 to 3,767,414 _3257 Pf6N2E2_3258 - Uncharacterized ABC transporter, periplasmic component YrbD, at 3,767,426 to 3,767,893 _3258 Pf6N2E2_3259 - Uncharacterized ABC transporter, permease component YrbE, at 3,767,893 to 3,768,690 _3259 Position (kb) 3766 3767 3768Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3766.076 kb on - strand, within Pf6N2E2_3255at 3766.076 kb on - strand, within Pf6N2E2_3255at 3766.076 kb on - strand, within Pf6N2E2_3255at 3766.076 kb on - strand, within Pf6N2E2_3255at 3766.076 kb on - strand, within Pf6N2E2_3255at 3766.076 kb on - strand, within Pf6N2E2_3255at 3766.195 kb on - strand, within Pf6N2E2_3255at 3766.195 kb on - strand, within Pf6N2E2_3255at 3766.195 kb on - strand, within Pf6N2E2_3255at 3766.213 kb on - strandat 3766.317 kb on + strandat 3766.489 kb on + strand, within Pf6N2E2_3256at 3766.966 kb on + strand, within Pf6N2E2_3257at 3766.978 kb on + strand, within Pf6N2E2_3257at 3766.979 kb on - strand, within Pf6N2E2_3257at 3767.074 kb on + strand, within Pf6N2E2_3257at 3767.074 kb on + strand, within Pf6N2E2_3257at 3767.075 kb on - strand, within Pf6N2E2_3257at 3767.167 kb on + strand, within Pf6N2E2_3257at 3767.167 kb on + strand, within Pf6N2E2_3257at 3767.167 kb on + strand, within Pf6N2E2_3257at 3767.168 kb on - strand, within Pf6N2E2_3257at 3767.242 kb on + strandat 3767.243 kb on - strand, within Pf6N2E2_3257at 3767.243 kb on - strand, within Pf6N2E2_3257at 3767.243 kb on - strand, within Pf6N2E2_3257at 3767.267 kb on - strand, within Pf6N2E2_3257at 3767.406 kb on - strandat 3767.562 kb on + strand, within Pf6N2E2_3258at 3767.562 kb on + strandat 3767.563 kb on - strand, within Pf6N2E2_3258at 3767.563 kb on - strand, within Pf6N2E2_3258at 3767.563 kb on - strand, within Pf6N2E2_3258at 3767.563 kb on - strand, within Pf6N2E2_3258at 3767.563 kb on - strand, within Pf6N2E2_3258at 3767.594 kb on - strand, within Pf6N2E2_3258at 3767.767 kb on - strand, within Pf6N2E2_3258at 3767.773 kb on + strand, within Pf6N2E2_3258at 3767.773 kb on + strand, within Pf6N2E2_3258at 3767.775 kb on + strand, within Pf6N2E2_3258at 3767.776 kb on - strand, within Pf6N2E2_3258at 3767.776 kb on - strand, within Pf6N2E2_3258at 3767.776 kb on - strand, within Pf6N2E2_3258at 3767.779 kb on + strand, within Pf6N2E2_3258at 3767.779 kb on + strand, within Pf6N2E2_3258at 3767.779 kb on + strand, within Pf6N2E2_3258at 3767.780 kb on - strandat 3768.014 kb on + strand, within Pf6N2E2_3259at 3768.055 kb on + strand, within Pf6N2E2_3259at 3768.137 kb on + strand, within Pf6N2E2_3259

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,766,076 - Pf6N2E2_3255 0.38 +3.5
3,766,076 - Pf6N2E2_3255 0.38 +1.8
3,766,076 - Pf6N2E2_3255 0.38 +1.7
3,766,076 - Pf6N2E2_3255 0.38 +0.2
3,766,076 - Pf6N2E2_3255 0.38 -3.4
3,766,076 - Pf6N2E2_3255 0.38 +0.3
3,766,195 - Pf6N2E2_3255 0.88 -1.4
3,766,195 - Pf6N2E2_3255 0.88 +1.3
3,766,195 - Pf6N2E2_3255 0.88 +0.7
3,766,213 - +0.3
3,766,317 + -0.8
3,766,489 + Pf6N2E2_3256 0.13 -1.1
3,766,966 + Pf6N2E2_3257 0.31 -0.6
3,766,978 + Pf6N2E2_3257 0.33 -1.0
3,766,979 - Pf6N2E2_3257 0.33 -1.1
3,767,074 + Pf6N2E2_3257 0.48 +0.2
3,767,074 + Pf6N2E2_3257 0.48 -1.8
3,767,075 - Pf6N2E2_3257 0.48 -2.5
3,767,167 + Pf6N2E2_3257 0.62 -1.4
3,767,167 + Pf6N2E2_3257 0.62 -0.8
3,767,167 + Pf6N2E2_3257 0.62 -2.0
3,767,168 - Pf6N2E2_3257 0.62 -1.8
3,767,242 + +1.2
3,767,243 - Pf6N2E2_3257 0.74 +1.2
3,767,243 - Pf6N2E2_3257 0.74 -2.2
3,767,243 - Pf6N2E2_3257 0.74 -1.1
3,767,267 - Pf6N2E2_3257 0.77 +0.2
3,767,406 - +1.6
3,767,562 + Pf6N2E2_3258 0.29 +0.2
3,767,562 + +0.2
3,767,563 - Pf6N2E2_3258 0.29 -1.8
3,767,563 - Pf6N2E2_3258 0.29 -1.4
3,767,563 - Pf6N2E2_3258 0.29 -1.8
3,767,563 - Pf6N2E2_3258 0.29 +1.3
3,767,563 - Pf6N2E2_3258 0.29 -1.1
3,767,594 - Pf6N2E2_3258 0.36 -1.4
3,767,767 - Pf6N2E2_3258 0.73 +0.5
3,767,773 + Pf6N2E2_3258 0.74 +2.0
3,767,773 + Pf6N2E2_3258 0.74 -2.5
3,767,775 + Pf6N2E2_3258 0.75 +0.6
3,767,776 - Pf6N2E2_3258 0.75 +0.0
3,767,776 - Pf6N2E2_3258 0.75 -0.4
3,767,776 - Pf6N2E2_3258 0.75 -0.6
3,767,779 + Pf6N2E2_3258 0.75 -0.4
3,767,779 + Pf6N2E2_3258 0.75 -2.8
3,767,779 + Pf6N2E2_3258 0.75 +1.7
3,767,780 - +2.2
3,768,014 + Pf6N2E2_3259 0.15 +2.2
3,768,055 + Pf6N2E2_3259 0.20 -0.8
3,768,137 + Pf6N2E2_3259 0.31 +0.5

Or see this region's nucleotide sequence