Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3254 and Pf6N2E2_3255 are separated by 22 nucleotides Pf6N2E2_3255 and Pf6N2E2_3256 are separated by 223 nucleotides Pf6N2E2_3256 and Pf6N2E2_3257 overlap by 4 nucleotides Pf6N2E2_3257 and Pf6N2E2_3258 are separated by 11 nucleotides Pf6N2E2_3258 and Pf6N2E2_3259 overlap by 1 nucleotides
Pf6N2E2_3254 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7), at 3,764,696 to 3,765,961
_3254
Pf6N2E2_3255 - YrbA protein, at 3,765,984 to 3,766,223
_3255
Pf6N2E2_3256 - Uncharacterized protein YrbB, at 3,766,447 to 3,766,764
_3256
Pf6N2E2_3257 - Uncharacterized ABC transporter, auxiliary component YrbC, at 3,766,761 to 3,767,414
_3257
Pf6N2E2_3258 - Uncharacterized ABC transporter, periplasmic component YrbD, at 3,767,426 to 3,767,893
_3258
Pf6N2E2_3259 - Uncharacterized ABC transporter, permease component YrbE, at 3,767,893 to 3,768,690
_3259
Position (kb)
3766
3767
3768 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3766.076 kb on - strand, within Pf6N2E2_3255 at 3766.076 kb on - strand, within Pf6N2E2_3255 at 3766.076 kb on - strand, within Pf6N2E2_3255 at 3766.076 kb on - strand, within Pf6N2E2_3255 at 3766.076 kb on - strand, within Pf6N2E2_3255 at 3766.076 kb on - strand, within Pf6N2E2_3255 at 3766.195 kb on - strand, within Pf6N2E2_3255 at 3766.195 kb on - strand, within Pf6N2E2_3255 at 3766.195 kb on - strand, within Pf6N2E2_3255 at 3766.213 kb on - strand at 3766.317 kb on + strand at 3766.489 kb on + strand, within Pf6N2E2_3256 at 3766.966 kb on + strand, within Pf6N2E2_3257 at 3766.978 kb on + strand, within Pf6N2E2_3257 at 3766.979 kb on - strand, within Pf6N2E2_3257 at 3767.074 kb on + strand, within Pf6N2E2_3257 at 3767.074 kb on + strand, within Pf6N2E2_3257 at 3767.075 kb on - strand, within Pf6N2E2_3257 at 3767.167 kb on + strand, within Pf6N2E2_3257 at 3767.167 kb on + strand, within Pf6N2E2_3257 at 3767.167 kb on + strand, within Pf6N2E2_3257 at 3767.168 kb on - strand, within Pf6N2E2_3257 at 3767.242 kb on + strand at 3767.243 kb on - strand, within Pf6N2E2_3257 at 3767.243 kb on - strand, within Pf6N2E2_3257 at 3767.243 kb on - strand, within Pf6N2E2_3257 at 3767.267 kb on - strand, within Pf6N2E2_3257 at 3767.406 kb on - strand at 3767.562 kb on + strand, within Pf6N2E2_3258 at 3767.562 kb on + strand at 3767.563 kb on - strand, within Pf6N2E2_3258 at 3767.563 kb on - strand, within Pf6N2E2_3258 at 3767.563 kb on - strand, within Pf6N2E2_3258 at 3767.563 kb on - strand, within Pf6N2E2_3258 at 3767.563 kb on - strand, within Pf6N2E2_3258 at 3767.594 kb on - strand, within Pf6N2E2_3258 at 3767.767 kb on - strand, within Pf6N2E2_3258 at 3767.773 kb on + strand, within Pf6N2E2_3258 at 3767.773 kb on + strand, within Pf6N2E2_3258 at 3767.775 kb on + strand, within Pf6N2E2_3258 at 3767.776 kb on - strand, within Pf6N2E2_3258 at 3767.776 kb on - strand, within Pf6N2E2_3258 at 3767.776 kb on - strand, within Pf6N2E2_3258 at 3767.779 kb on + strand, within Pf6N2E2_3258 at 3767.779 kb on + strand, within Pf6N2E2_3258 at 3767.779 kb on + strand, within Pf6N2E2_3258 at 3767.780 kb on - strand at 3768.014 kb on + strand, within Pf6N2E2_3259 at 3768.055 kb on + strand, within Pf6N2E2_3259 at 3768.137 kb on + strand, within Pf6N2E2_3259
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,766,076 - Pf6N2E2_3255 0.38 +3.5 3,766,076 - Pf6N2E2_3255 0.38 +1.8 3,766,076 - Pf6N2E2_3255 0.38 +1.7 3,766,076 - Pf6N2E2_3255 0.38 +0.2 3,766,076 - Pf6N2E2_3255 0.38 -3.4 3,766,076 - Pf6N2E2_3255 0.38 +0.3 3,766,195 - Pf6N2E2_3255 0.88 -1.4 3,766,195 - Pf6N2E2_3255 0.88 +1.3 3,766,195 - Pf6N2E2_3255 0.88 +0.7 3,766,213 - +0.3 3,766,317 + -0.8 3,766,489 + Pf6N2E2_3256 0.13 -1.1 3,766,966 + Pf6N2E2_3257 0.31 -0.6 3,766,978 + Pf6N2E2_3257 0.33 -1.0 3,766,979 - Pf6N2E2_3257 0.33 -1.1 3,767,074 + Pf6N2E2_3257 0.48 +0.2 3,767,074 + Pf6N2E2_3257 0.48 -1.8 3,767,075 - Pf6N2E2_3257 0.48 -2.5 3,767,167 + Pf6N2E2_3257 0.62 -1.4 3,767,167 + Pf6N2E2_3257 0.62 -0.8 3,767,167 + Pf6N2E2_3257 0.62 -2.0 3,767,168 - Pf6N2E2_3257 0.62 -1.8 3,767,242 + +1.2 3,767,243 - Pf6N2E2_3257 0.74 +1.2 3,767,243 - Pf6N2E2_3257 0.74 -2.2 3,767,243 - Pf6N2E2_3257 0.74 -1.1 3,767,267 - Pf6N2E2_3257 0.77 +0.2 3,767,406 - +1.6 3,767,562 + Pf6N2E2_3258 0.29 +0.2 3,767,562 + +0.2 3,767,563 - Pf6N2E2_3258 0.29 -1.8 3,767,563 - Pf6N2E2_3258 0.29 -1.4 3,767,563 - Pf6N2E2_3258 0.29 -1.8 3,767,563 - Pf6N2E2_3258 0.29 +1.3 3,767,563 - Pf6N2E2_3258 0.29 -1.1 3,767,594 - Pf6N2E2_3258 0.36 -1.4 3,767,767 - Pf6N2E2_3258 0.73 +0.5 3,767,773 + Pf6N2E2_3258 0.74 +2.0 3,767,773 + Pf6N2E2_3258 0.74 -2.5 3,767,775 + Pf6N2E2_3258 0.75 +0.6 3,767,776 - Pf6N2E2_3258 0.75 +0.0 3,767,776 - Pf6N2E2_3258 0.75 -0.4 3,767,776 - Pf6N2E2_3258 0.75 -0.6 3,767,779 + Pf6N2E2_3258 0.75 -0.4 3,767,779 + Pf6N2E2_3258 0.75 -2.8 3,767,779 + Pf6N2E2_3258 0.75 +1.7 3,767,780 - +2.2 3,768,014 + Pf6N2E2_3259 0.15 +2.2 3,768,055 + Pf6N2E2_3259 0.20 -0.8 3,768,137 + Pf6N2E2_3259 0.31 +0.5
Or see this region's nucleotide sequence