Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_302

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_301 and Pf6N2E2_302 are separated by 0 nucleotidesPf6N2E2_302 and Pf6N2E2_303 are separated by 127 nucleotides Pf6N2E2_301 - Seryl-tRNA synthetase (EC 6.1.1.11), at 371,114 to 372,394 _301 Pf6N2E2_302 - Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107), at 372,395 to 373,789 _302 Pf6N2E2_303 - Glutathione S-transferase, omega (EC 2.5.1.18), at 373,917 to 374,915 _303 Position (kb) 372 373 374Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 372.401 kb on + strandat 372.587 kb on + strand, within Pf6N2E2_302at 372.588 kb on - strand, within Pf6N2E2_302at 373.049 kb on + strand, within Pf6N2E2_302at 373.193 kb on + strand, within Pf6N2E2_302at 373.193 kb on + strand, within Pf6N2E2_302at 373.440 kb on - strand, within Pf6N2E2_302at 373.538 kb on + strand, within Pf6N2E2_302at 373.538 kb on + strand, within Pf6N2E2_302at 373.538 kb on + strand, within Pf6N2E2_302at 373.538 kb on + strand, within Pf6N2E2_302at 373.538 kb on + strand, within Pf6N2E2_302at 373.539 kb on - strand, within Pf6N2E2_302at 373.539 kb on - strand, within Pf6N2E2_302at 373.539 kb on - strand, within Pf6N2E2_302at 373.539 kb on - strand, within Pf6N2E2_302at 373.755 kb on + strandat 373.755 kb on + strandat 373.787 kb on + strandat 373.788 kb on - strandat 374.035 kb on + strand, within Pf6N2E2_303at 374.035 kb on + strand, within Pf6N2E2_303at 374.035 kb on + strand, within Pf6N2E2_303at 374.036 kb on - strand, within Pf6N2E2_303at 374.036 kb on - strand, within Pf6N2E2_303at 374.036 kb on - strand, within Pf6N2E2_303at 374.036 kb on - strand, within Pf6N2E2_303at 374.039 kb on - strand, within Pf6N2E2_303at 374.039 kb on - strand, within Pf6N2E2_303at 374.039 kb on - strand, within Pf6N2E2_303at 374.052 kb on - strand, within Pf6N2E2_303at 374.092 kb on + strand, within Pf6N2E2_303at 374.167 kb on + strand, within Pf6N2E2_303at 374.167 kb on + strand, within Pf6N2E2_303at 374.168 kb on - strand, within Pf6N2E2_303at 374.225 kb on - strand, within Pf6N2E2_303at 374.225 kb on - strand, within Pf6N2E2_303at 374.239 kb on + strand, within Pf6N2E2_303at 374.308 kb on + strand, within Pf6N2E2_303at 374.309 kb on - strand, within Pf6N2E2_303at 374.366 kb on - strand, within Pf6N2E2_303at 374.545 kb on + strand, within Pf6N2E2_303at 374.546 kb on - strand, within Pf6N2E2_303at 374.566 kb on + strand, within Pf6N2E2_303at 374.656 kb on + strand, within Pf6N2E2_303at 374.670 kb on + strand, within Pf6N2E2_303at 374.670 kb on + strand, within Pf6N2E2_303at 374.749 kb on + strand, within Pf6N2E2_303at 374.749 kb on + strand, within Pf6N2E2_303at 374.749 kb on + strand, within Pf6N2E2_303at 374.749 kb on + strand, within Pf6N2E2_303at 374.749 kb on + strand, within Pf6N2E2_303at 374.749 kb on + strand, within Pf6N2E2_303at 374.749 kb on + strand, within Pf6N2E2_303at 374.749 kb on + strand, within Pf6N2E2_303at 374.749 kb on + strand, within Pf6N2E2_303at 374.749 kb on + strand, within Pf6N2E2_303at 374.750 kb on - strand, within Pf6N2E2_303at 374.750 kb on - strand, within Pf6N2E2_303at 374.750 kb on - strand, within Pf6N2E2_303at 374.750 kb on - strand, within Pf6N2E2_303at 374.750 kb on - strand, within Pf6N2E2_303at 374.750 kb on - strand, within Pf6N2E2_303

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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372,401 + -0.2
372,587 + Pf6N2E2_302 0.14 -3.8
372,588 - Pf6N2E2_302 0.14 -2.8
373,049 + Pf6N2E2_302 0.47 -3.0
373,193 + Pf6N2E2_302 0.57 -2.6
373,193 + Pf6N2E2_302 0.57 -3.5
373,440 - Pf6N2E2_302 0.75 -0.0
373,538 + Pf6N2E2_302 0.82 -3.1
373,538 + Pf6N2E2_302 0.82 -1.6
373,538 + Pf6N2E2_302 0.82 -3.3
373,538 + Pf6N2E2_302 0.82 -2.7
373,538 + Pf6N2E2_302 0.82 -3.3
373,539 - Pf6N2E2_302 0.82 -2.8
373,539 - Pf6N2E2_302 0.82 -1.7
373,539 - Pf6N2E2_302 0.82 -1.9
373,539 - Pf6N2E2_302 0.82 -3.1
373,755 + -1.9
373,755 + -1.7
373,787 + -0.1
373,788 - -2.4
374,035 + Pf6N2E2_303 0.12 -0.2
374,035 + Pf6N2E2_303 0.12 -0.0
374,035 + Pf6N2E2_303 0.12 -0.5
374,036 - Pf6N2E2_303 0.12 -1.5
374,036 - Pf6N2E2_303 0.12 +1.3
374,036 - Pf6N2E2_303 0.12 +1.6
374,036 - Pf6N2E2_303 0.12 +0.3
374,039 - Pf6N2E2_303 0.12 +0.2
374,039 - Pf6N2E2_303 0.12 -0.0
374,039 - Pf6N2E2_303 0.12 +0.1
374,052 - Pf6N2E2_303 0.14 +0.6
374,092 + Pf6N2E2_303 0.18 +1.7
374,167 + Pf6N2E2_303 0.25 +1.0
374,167 + Pf6N2E2_303 0.25 +0.5
374,168 - Pf6N2E2_303 0.25 +1.3
374,225 - Pf6N2E2_303 0.31 +0.2
374,225 - Pf6N2E2_303 0.31 +0.3
374,239 + Pf6N2E2_303 0.32 -1.7
374,308 + Pf6N2E2_303 0.39 -1.0
374,309 - Pf6N2E2_303 0.39 -3.0
374,366 - Pf6N2E2_303 0.45 -1.6
374,545 + Pf6N2E2_303 0.63 +0.7
374,546 - Pf6N2E2_303 0.63 +0.4
374,566 + Pf6N2E2_303 0.65 +0.4
374,656 + Pf6N2E2_303 0.74 -0.5
374,670 + Pf6N2E2_303 0.75 +1.7
374,670 + Pf6N2E2_303 0.75 +0.9
374,749 + Pf6N2E2_303 0.83 -0.4
374,749 + Pf6N2E2_303 0.83 -0.3
374,749 + Pf6N2E2_303 0.83 -3.3
374,749 + Pf6N2E2_303 0.83 -1.3
374,749 + Pf6N2E2_303 0.83 +0.2
374,749 + Pf6N2E2_303 0.83 -3.9
374,749 + Pf6N2E2_303 0.83 -0.2
374,749 + Pf6N2E2_303 0.83 -1.0
374,749 + Pf6N2E2_303 0.83 +1.3
374,749 + Pf6N2E2_303 0.83 +0.7
374,750 - Pf6N2E2_303 0.83 -0.5
374,750 - Pf6N2E2_303 0.83 -0.6
374,750 - Pf6N2E2_303 0.83 +1.4
374,750 - Pf6N2E2_303 0.83 +0.3
374,750 - Pf6N2E2_303 0.83 +0.9
374,750 - Pf6N2E2_303 0.83 -2.8

Or see this region's nucleotide sequence