Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2986

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2984 and Pf6N2E2_2985 are separated by 4 nucleotidesPf6N2E2_2985 and Pf6N2E2_2986 are separated by 72 nucleotidesPf6N2E2_2986 and Pf6N2E2_2987 are separated by 213 nucleotides Pf6N2E2_2984 - LysR family transcriptional regulator PA3398, at 3,479,025 to 3,480,011 _2984 Pf6N2E2_2985 - Diacylglycerol kinase (EC 2.7.1.107), at 3,480,016 to 3,480,378 _2985 Pf6N2E2_2986 - Transcriptional regulator, LuxR family, at 3,480,451 to 3,481,104 _2986 Pf6N2E2_2987 - FIG074102: hypothetical protein, at 3,481,318 to 3,482,067 _2987 Position (kb) 3480 3481 3482Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3479.500 kb on - strand, within Pf6N2E2_2984at 3479.904 kb on - strand, within Pf6N2E2_2984at 3479.914 kb on - strandat 3480.064 kb on + strand, within Pf6N2E2_2985at 3480.064 kb on + strand, within Pf6N2E2_2985at 3480.065 kb on - strand, within Pf6N2E2_2985at 3480.065 kb on - strand, within Pf6N2E2_2985at 3480.065 kb on - strand, within Pf6N2E2_2985at 3480.065 kb on - strand, within Pf6N2E2_2985at 3480.366 kb on + strandat 3480.366 kb on + strandat 3480.367 kb on - strandat 3480.378 kb on + strandat 3480.378 kb on + strandat 3480.378 kb on + strandat 3480.378 kb on + strandat 3480.378 kb on + strandat 3480.378 kb on + strandat 3480.378 kb on + strandat 3480.378 kb on + strandat 3480.378 kb on + strandat 3480.378 kb on + strandat 3480.379 kb on - strandat 3480.379 kb on - strandat 3480.379 kb on - strandat 3480.379 kb on - strandat 3480.379 kb on - strandat 3480.379 kb on - strandat 3480.379 kb on - strandat 3480.379 kb on - strandat 3480.379 kb on - strandat 3480.414 kb on + strandat 3480.415 kb on - strandat 3480.452 kb on + strandat 3480.452 kb on + strandat 3480.452 kb on + strandat 3480.452 kb on + strandat 3480.452 kb on + strandat 3480.452 kb on + strandat 3480.453 kb on - strandat 3480.453 kb on - strandat 3480.453 kb on - strandat 3480.602 kb on - strand, within Pf6N2E2_2986at 3480.787 kb on + strand, within Pf6N2E2_2986at 3480.787 kb on + strand, within Pf6N2E2_2986at 3480.876 kb on - strand, within Pf6N2E2_2986at 3480.912 kb on - strand, within Pf6N2E2_2986at 3480.912 kb on - strand, within Pf6N2E2_2986at 3481.094 kb on + strandat 3481.095 kb on - strandat 3481.095 kb on - strandat 3481.095 kb on - strandat 3481.095 kb on - strandat 3481.125 kb on + strandat 3481.125 kb on + strandat 3481.310 kb on - strandat 3481.310 kb on - strandat 3481.310 kb on - strandat 3481.310 kb on - strandat 3481.320 kb on - strandat 3481.320 kb on - strandat 3481.330 kb on + strandat 3481.331 kb on - strandat 3481.418 kb on + strand, within Pf6N2E2_2987at 3481.419 kb on - strand, within Pf6N2E2_2987at 3481.419 kb on - strand, within Pf6N2E2_2987at 3481.419 kb on - strand, within Pf6N2E2_2987at 3481.442 kb on + strand, within Pf6N2E2_2987at 3481.443 kb on - strand, within Pf6N2E2_2987at 3481.443 kb on - strand, within Pf6N2E2_2987at 3481.601 kb on + strand, within Pf6N2E2_2987at 3481.601 kb on + strand, within Pf6N2E2_2987at 3481.602 kb on - strand, within Pf6N2E2_2987at 3481.611 kb on + strand, within Pf6N2E2_2987at 3481.718 kb on + strand, within Pf6N2E2_2987at 3481.719 kb on - strand, within Pf6N2E2_2987at 3481.719 kb on - strand, within Pf6N2E2_2987at 3481.739 kb on + strand, within Pf6N2E2_2987at 3481.739 kb on + strand, within Pf6N2E2_2987at 3481.739 kb on + strand, within Pf6N2E2_2987at 3481.740 kb on - strand, within Pf6N2E2_2987at 3481.740 kb on - strand, within Pf6N2E2_2987

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,479,500 - Pf6N2E2_2984 0.48 -1.4
3,479,904 - Pf6N2E2_2984 0.89 +0.7
3,479,914 - +1.4
3,480,064 + Pf6N2E2_2985 0.13 -0.2
3,480,064 + Pf6N2E2_2985 0.13 +0.1
3,480,065 - Pf6N2E2_2985 0.13 +2.2
3,480,065 - Pf6N2E2_2985 0.13 +0.4
3,480,065 - Pf6N2E2_2985 0.13 -0.2
3,480,065 - Pf6N2E2_2985 0.13 -1.9
3,480,366 + +0.3
3,480,366 + -0.5
3,480,367 - -3.4
3,480,378 + +0.9
3,480,378 + -0.6
3,480,378 + -1.0
3,480,378 + -2.4
3,480,378 + -1.1
3,480,378 + +0.1
3,480,378 + +2.0
3,480,378 + +0.1
3,480,378 + +0.6
3,480,378 + +1.8
3,480,379 - -1.4
3,480,379 - +1.4
3,480,379 - +0.4
3,480,379 - +0.2
3,480,379 - -0.1
3,480,379 - -0.0
3,480,379 - +0.9
3,480,379 - -0.3
3,480,379 - -1.5
3,480,414 + -0.2
3,480,415 - +1.1
3,480,452 + +2.5
3,480,452 + -0.3
3,480,452 + -0.0
3,480,452 + -0.5
3,480,452 + -3.2
3,480,452 + +1.0
3,480,453 - -0.5
3,480,453 - +0.1
3,480,453 - +0.0
3,480,602 - Pf6N2E2_2986 0.23 -2.7
3,480,787 + Pf6N2E2_2986 0.51 -1.1
3,480,787 + Pf6N2E2_2986 0.51 +0.2
3,480,876 - Pf6N2E2_2986 0.65 -1.0
3,480,912 - Pf6N2E2_2986 0.70 -2.0
3,480,912 - Pf6N2E2_2986 0.70 +1.3
3,481,094 + +0.4
3,481,095 - -0.1
3,481,095 - -1.6
3,481,095 - -1.1
3,481,095 - -3.9
3,481,125 + -1.2
3,481,125 + +1.7
3,481,310 - +2.1
3,481,310 - -1.1
3,481,310 - -0.0
3,481,310 - +1.4
3,481,320 - +1.1
3,481,320 - -2.7
3,481,330 + +0.2
3,481,331 - -0.2
3,481,418 + Pf6N2E2_2987 0.13 +0.9
3,481,419 - Pf6N2E2_2987 0.13 -0.3
3,481,419 - Pf6N2E2_2987 0.13 +1.2
3,481,419 - Pf6N2E2_2987 0.13 -0.1
3,481,442 + Pf6N2E2_2987 0.17 +0.9
3,481,443 - Pf6N2E2_2987 0.17 +1.2
3,481,443 - Pf6N2E2_2987 0.17 +0.3
3,481,601 + Pf6N2E2_2987 0.38 +0.5
3,481,601 + Pf6N2E2_2987 0.38 -0.6
3,481,602 - Pf6N2E2_2987 0.38 -0.0
3,481,611 + Pf6N2E2_2987 0.39 -0.8
3,481,718 + Pf6N2E2_2987 0.53 +0.8
3,481,719 - Pf6N2E2_2987 0.53 -1.5
3,481,719 - Pf6N2E2_2987 0.53 +0.5
3,481,739 + Pf6N2E2_2987 0.56 +0.7
3,481,739 + Pf6N2E2_2987 0.56 -1.7
3,481,739 + Pf6N2E2_2987 0.56 +0.5
3,481,740 - Pf6N2E2_2987 0.56 -2.8
3,481,740 - Pf6N2E2_2987 0.56 +0.8

Or see this region's nucleotide sequence