Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2984 and Pf6N2E2_2985 are separated by 4 nucleotides Pf6N2E2_2985 and Pf6N2E2_2986 are separated by 72 nucleotides Pf6N2E2_2986 and Pf6N2E2_2987 are separated by 213 nucleotides
Pf6N2E2_2984 - LysR family transcriptional regulator PA3398, at 3,479,025 to 3,480,011
_2984
Pf6N2E2_2985 - Diacylglycerol kinase (EC 2.7.1.107), at 3,480,016 to 3,480,378
_2985
Pf6N2E2_2986 - Transcriptional regulator, LuxR family, at 3,480,451 to 3,481,104
_2986
Pf6N2E2_2987 - FIG074102: hypothetical protein, at 3,481,318 to 3,482,067
_2987
Position (kb)
3480
3481
3482 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3479.500 kb on - strand, within Pf6N2E2_2984 at 3479.904 kb on - strand, within Pf6N2E2_2984 at 3479.914 kb on - strand at 3480.064 kb on + strand, within Pf6N2E2_2985 at 3480.064 kb on + strand, within Pf6N2E2_2985 at 3480.065 kb on - strand, within Pf6N2E2_2985 at 3480.065 kb on - strand, within Pf6N2E2_2985 at 3480.065 kb on - strand, within Pf6N2E2_2985 at 3480.065 kb on - strand, within Pf6N2E2_2985 at 3480.366 kb on + strand at 3480.366 kb on + strand at 3480.367 kb on - strand at 3480.378 kb on + strand at 3480.378 kb on + strand at 3480.378 kb on + strand at 3480.378 kb on + strand at 3480.378 kb on + strand at 3480.378 kb on + strand at 3480.378 kb on + strand at 3480.378 kb on + strand at 3480.378 kb on + strand at 3480.378 kb on + strand at 3480.379 kb on - strand at 3480.379 kb on - strand at 3480.379 kb on - strand at 3480.379 kb on - strand at 3480.379 kb on - strand at 3480.379 kb on - strand at 3480.379 kb on - strand at 3480.379 kb on - strand at 3480.379 kb on - strand at 3480.414 kb on + strand at 3480.415 kb on - strand at 3480.452 kb on + strand at 3480.452 kb on + strand at 3480.452 kb on + strand at 3480.452 kb on + strand at 3480.452 kb on + strand at 3480.452 kb on + strand at 3480.453 kb on - strand at 3480.453 kb on - strand at 3480.453 kb on - strand at 3480.602 kb on - strand, within Pf6N2E2_2986 at 3480.787 kb on + strand, within Pf6N2E2_2986 at 3480.787 kb on + strand, within Pf6N2E2_2986 at 3480.876 kb on - strand, within Pf6N2E2_2986 at 3480.912 kb on - strand, within Pf6N2E2_2986 at 3480.912 kb on - strand, within Pf6N2E2_2986 at 3481.094 kb on + strand at 3481.095 kb on - strand at 3481.095 kb on - strand at 3481.095 kb on - strand at 3481.095 kb on - strand at 3481.125 kb on + strand at 3481.125 kb on + strand at 3481.310 kb on - strand at 3481.310 kb on - strand at 3481.310 kb on - strand at 3481.310 kb on - strand at 3481.320 kb on - strand at 3481.320 kb on - strand at 3481.330 kb on + strand at 3481.331 kb on - strand at 3481.418 kb on + strand, within Pf6N2E2_2987 at 3481.419 kb on - strand, within Pf6N2E2_2987 at 3481.419 kb on - strand, within Pf6N2E2_2987 at 3481.419 kb on - strand, within Pf6N2E2_2987 at 3481.442 kb on + strand, within Pf6N2E2_2987 at 3481.443 kb on - strand, within Pf6N2E2_2987 at 3481.443 kb on - strand, within Pf6N2E2_2987 at 3481.601 kb on + strand, within Pf6N2E2_2987 at 3481.601 kb on + strand, within Pf6N2E2_2987 at 3481.602 kb on - strand, within Pf6N2E2_2987 at 3481.611 kb on + strand, within Pf6N2E2_2987 at 3481.718 kb on + strand, within Pf6N2E2_2987 at 3481.719 kb on - strand, within Pf6N2E2_2987 at 3481.719 kb on - strand, within Pf6N2E2_2987 at 3481.739 kb on + strand, within Pf6N2E2_2987 at 3481.739 kb on + strand, within Pf6N2E2_2987 at 3481.739 kb on + strand, within Pf6N2E2_2987 at 3481.740 kb on - strand, within Pf6N2E2_2987 at 3481.740 kb on - strand, within Pf6N2E2_2987
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,479,500 - Pf6N2E2_2984 0.48 -1.4 3,479,904 - Pf6N2E2_2984 0.89 +0.7 3,479,914 - +1.4 3,480,064 + Pf6N2E2_2985 0.13 -0.2 3,480,064 + Pf6N2E2_2985 0.13 +0.1 3,480,065 - Pf6N2E2_2985 0.13 +2.2 3,480,065 - Pf6N2E2_2985 0.13 +0.4 3,480,065 - Pf6N2E2_2985 0.13 -0.2 3,480,065 - Pf6N2E2_2985 0.13 -1.9 3,480,366 + +0.3 3,480,366 + -0.5 3,480,367 - -3.4 3,480,378 + +0.9 3,480,378 + -0.6 3,480,378 + -1.0 3,480,378 + -2.4 3,480,378 + -1.1 3,480,378 + +0.1 3,480,378 + +2.0 3,480,378 + +0.1 3,480,378 + +0.6 3,480,378 + +1.8 3,480,379 - -1.4 3,480,379 - +1.4 3,480,379 - +0.4 3,480,379 - +0.2 3,480,379 - -0.1 3,480,379 - -0.0 3,480,379 - +0.9 3,480,379 - -0.3 3,480,379 - -1.5 3,480,414 + -0.2 3,480,415 - +1.1 3,480,452 + +2.5 3,480,452 + -0.3 3,480,452 + -0.0 3,480,452 + -0.5 3,480,452 + -3.2 3,480,452 + +1.0 3,480,453 - -0.5 3,480,453 - +0.1 3,480,453 - +0.0 3,480,602 - Pf6N2E2_2986 0.23 -2.7 3,480,787 + Pf6N2E2_2986 0.51 -1.1 3,480,787 + Pf6N2E2_2986 0.51 +0.2 3,480,876 - Pf6N2E2_2986 0.65 -1.0 3,480,912 - Pf6N2E2_2986 0.70 -2.0 3,480,912 - Pf6N2E2_2986 0.70 +1.3 3,481,094 + +0.4 3,481,095 - -0.1 3,481,095 - -1.6 3,481,095 - -1.1 3,481,095 - -3.9 3,481,125 + -1.2 3,481,125 + +1.7 3,481,310 - +2.1 3,481,310 - -1.1 3,481,310 - -0.0 3,481,310 - +1.4 3,481,320 - +1.1 3,481,320 - -2.7 3,481,330 + +0.2 3,481,331 - -0.2 3,481,418 + Pf6N2E2_2987 0.13 +0.9 3,481,419 - Pf6N2E2_2987 0.13 -0.3 3,481,419 - Pf6N2E2_2987 0.13 +1.2 3,481,419 - Pf6N2E2_2987 0.13 -0.1 3,481,442 + Pf6N2E2_2987 0.17 +0.9 3,481,443 - Pf6N2E2_2987 0.17 +1.2 3,481,443 - Pf6N2E2_2987 0.17 +0.3 3,481,601 + Pf6N2E2_2987 0.38 +0.5 3,481,601 + Pf6N2E2_2987 0.38 -0.6 3,481,602 - Pf6N2E2_2987 0.38 -0.0 3,481,611 + Pf6N2E2_2987 0.39 -0.8 3,481,718 + Pf6N2E2_2987 0.53 +0.8 3,481,719 - Pf6N2E2_2987 0.53 -1.5 3,481,719 - Pf6N2E2_2987 0.53 +0.5 3,481,739 + Pf6N2E2_2987 0.56 +0.7 3,481,739 + Pf6N2E2_2987 0.56 -1.7 3,481,739 + Pf6N2E2_2987 0.56 +0.5 3,481,740 - Pf6N2E2_2987 0.56 -2.8 3,481,740 - Pf6N2E2_2987 0.56 +0.8
Or see this region's nucleotide sequence