Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2899

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2898 and Pf6N2E2_2899 are separated by 218 nucleotidesPf6N2E2_2899 and Pf6N2E2_2900 are separated by 247 nucleotidesPf6N2E2_2900 and Pf6N2E2_2901 are separated by 156 nucleotides Pf6N2E2_2898 - Phosphogluconate dehydratase (EC 4.2.1.12), at 3,386,886 to 3,388,712 _2898 Pf6N2E2_2899 - NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12), at 3,388,931 to 3,389,932 _2899 Pf6N2E2_2900 - FIG006045: Sigma factor, ECF subfamily, at 3,390,180 to 3,390,701 _2900 Pf6N2E2_2901 - Iron siderophore sensor protein, at 3,390,858 to 3,391,763 _2901 Position (kb) 3388 3389 3390Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3388.755 kb on - strandat 3388.755 kb on - strandat 3388.755 kb on - strandat 3388.889 kb on + strandat 3388.994 kb on + strandat 3388.994 kb on + strandat 3388.995 kb on - strandat 3388.995 kb on - strandat 3388.995 kb on - strandat 3388.995 kb on - strandat 3388.995 kb on - strandat 3389.266 kb on + strand, within Pf6N2E2_2899at 3389.267 kb on - strand, within Pf6N2E2_2899at 3389.267 kb on - strand, within Pf6N2E2_2899at 3389.333 kb on + strand, within Pf6N2E2_2899at 3389.477 kb on + strand, within Pf6N2E2_2899at 3389.478 kb on - strand, within Pf6N2E2_2899at 3389.478 kb on - strand, within Pf6N2E2_2899at 3389.478 kb on - strand, within Pf6N2E2_2899at 3389.478 kb on - strand, within Pf6N2E2_2899at 3389.507 kb on + strand, within Pf6N2E2_2899at 3389.508 kb on - strand, within Pf6N2E2_2899at 3389.864 kb on + strandat 3389.864 kb on + strandat 3389.864 kb on + strandat 3389.864 kb on + strandat 3389.865 kb on - strandat 3389.902 kb on + strandat 3389.930 kb on + strandat 3389.930 kb on + strandat 3389.931 kb on - strandat 3389.931 kb on - strandat 3389.963 kb on + strandat 3389.963 kb on + strandat 3389.964 kb on - strandat 3389.964 kb on - strandat 3390.294 kb on + strand, within Pf6N2E2_2900at 3390.295 kb on - strand, within Pf6N2E2_2900at 3390.431 kb on - strand, within Pf6N2E2_2900at 3390.588 kb on + strand, within Pf6N2E2_2900at 3390.589 kb on - strand, within Pf6N2E2_2900at 3390.589 kb on - strand, within Pf6N2E2_2900at 3390.683 kb on + strandat 3390.724 kb on + strandat 3390.724 kb on + strandat 3390.725 kb on - strandat 3390.725 kb on - strandat 3390.725 kb on - strandat 3390.725 kb on - strandat 3390.734 kb on - strandat 3390.755 kb on + strandat 3390.755 kb on + strandat 3390.756 kb on - strandat 3390.756 kb on - strandat 3390.764 kb on + strandat 3390.765 kb on - strandat 3390.765 kb on - strandat 3390.783 kb on + strandat 3390.784 kb on - strandat 3390.787 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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3,388,755 - -2.7
3,388,755 - -0.5
3,388,755 - -1.4
3,388,889 + +0.3
3,388,994 + -1.3
3,388,994 + -2.4
3,388,995 - -0.1
3,388,995 - -0.7
3,388,995 - -3.1
3,388,995 - -1.8
3,388,995 - -3.1
3,389,266 + Pf6N2E2_2899 0.33 -1.2
3,389,267 - Pf6N2E2_2899 0.34 +1.0
3,389,267 - Pf6N2E2_2899 0.34 -0.8
3,389,333 + Pf6N2E2_2899 0.40 -2.1
3,389,477 + Pf6N2E2_2899 0.54 -0.1
3,389,478 - Pf6N2E2_2899 0.55 -0.9
3,389,478 - Pf6N2E2_2899 0.55 -0.9
3,389,478 - Pf6N2E2_2899 0.55 +0.0
3,389,478 - Pf6N2E2_2899 0.55 -1.8
3,389,507 + Pf6N2E2_2899 0.57 -0.7
3,389,508 - Pf6N2E2_2899 0.58 -3.0
3,389,864 + -1.7
3,389,864 + -3.0
3,389,864 + -4.7
3,389,864 + -0.0
3,389,865 - -0.9
3,389,902 + -0.5
3,389,930 + -0.6
3,389,930 + -1.4
3,389,931 - -0.2
3,389,931 - -0.3
3,389,963 + -2.4
3,389,963 + -1.7
3,389,964 - -3.8
3,389,964 - -3.4
3,390,294 + Pf6N2E2_2900 0.22 -0.1
3,390,295 - Pf6N2E2_2900 0.22 +0.5
3,390,431 - Pf6N2E2_2900 0.48 +0.7
3,390,588 + Pf6N2E2_2900 0.78 +1.0
3,390,589 - Pf6N2E2_2900 0.78 -0.0
3,390,589 - Pf6N2E2_2900 0.78 +0.2
3,390,683 + +0.0
3,390,724 + +0.7
3,390,724 + -0.5
3,390,725 - +0.7
3,390,725 - -0.7
3,390,725 - +0.3
3,390,725 - -1.8
3,390,734 - -1.6
3,390,755 + -0.3
3,390,755 + +1.0
3,390,756 - +0.9
3,390,756 - +0.6
3,390,764 + -1.8
3,390,765 - -1.3
3,390,765 - +0.5
3,390,783 + +0.2
3,390,784 - +0.8
3,390,787 - -0.7

Or see this region's nucleotide sequence