Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2898 and Pf6N2E2_2899 are separated by 218 nucleotides Pf6N2E2_2899 and Pf6N2E2_2900 are separated by 247 nucleotides Pf6N2E2_2900 and Pf6N2E2_2901 are separated by 156 nucleotides
Pf6N2E2_2898 - Phosphogluconate dehydratase (EC 4.2.1.12), at 3,386,886 to 3,388,712
_2898
Pf6N2E2_2899 - NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12), at 3,388,931 to 3,389,932
_2899
Pf6N2E2_2900 - FIG006045: Sigma factor, ECF subfamily, at 3,390,180 to 3,390,701
_2900
Pf6N2E2_2901 - Iron siderophore sensor protein, at 3,390,858 to 3,391,763
_2901
Position (kb)
3388
3389
3390 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3388.755 kb on - strand at 3388.755 kb on - strand at 3388.755 kb on - strand at 3388.889 kb on + strand at 3388.994 kb on + strand at 3388.994 kb on + strand at 3388.995 kb on - strand at 3388.995 kb on - strand at 3388.995 kb on - strand at 3388.995 kb on - strand at 3388.995 kb on - strand at 3389.266 kb on + strand, within Pf6N2E2_2899 at 3389.267 kb on - strand, within Pf6N2E2_2899 at 3389.267 kb on - strand, within Pf6N2E2_2899 at 3389.333 kb on + strand, within Pf6N2E2_2899 at 3389.477 kb on + strand, within Pf6N2E2_2899 at 3389.478 kb on - strand, within Pf6N2E2_2899 at 3389.478 kb on - strand, within Pf6N2E2_2899 at 3389.478 kb on - strand, within Pf6N2E2_2899 at 3389.478 kb on - strand, within Pf6N2E2_2899 at 3389.507 kb on + strand, within Pf6N2E2_2899 at 3389.508 kb on - strand, within Pf6N2E2_2899 at 3389.864 kb on + strand at 3389.864 kb on + strand at 3389.864 kb on + strand at 3389.864 kb on + strand at 3389.865 kb on - strand at 3389.902 kb on + strand at 3389.930 kb on + strand at 3389.930 kb on + strand at 3389.931 kb on - strand at 3389.931 kb on - strand at 3389.963 kb on + strand at 3389.963 kb on + strand at 3389.964 kb on - strand at 3389.964 kb on - strand at 3390.294 kb on + strand, within Pf6N2E2_2900 at 3390.295 kb on - strand, within Pf6N2E2_2900 at 3390.431 kb on - strand, within Pf6N2E2_2900 at 3390.588 kb on + strand, within Pf6N2E2_2900 at 3390.589 kb on - strand, within Pf6N2E2_2900 at 3390.589 kb on - strand, within Pf6N2E2_2900 at 3390.683 kb on + strand at 3390.724 kb on + strand at 3390.724 kb on + strand at 3390.725 kb on - strand at 3390.725 kb on - strand at 3390.725 kb on - strand at 3390.725 kb on - strand at 3390.734 kb on - strand at 3390.755 kb on + strand at 3390.755 kb on + strand at 3390.756 kb on - strand at 3390.756 kb on - strand at 3390.764 kb on + strand at 3390.765 kb on - strand at 3390.765 kb on - strand at 3390.783 kb on + strand at 3390.784 kb on - strand at 3390.787 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,388,755 - -2.7 3,388,755 - -0.5 3,388,755 - -1.4 3,388,889 + +0.3 3,388,994 + -1.3 3,388,994 + -2.4 3,388,995 - -0.1 3,388,995 - -0.7 3,388,995 - -3.1 3,388,995 - -1.8 3,388,995 - -3.1 3,389,266 + Pf6N2E2_2899 0.33 -1.2 3,389,267 - Pf6N2E2_2899 0.34 +1.0 3,389,267 - Pf6N2E2_2899 0.34 -0.8 3,389,333 + Pf6N2E2_2899 0.40 -2.1 3,389,477 + Pf6N2E2_2899 0.54 -0.1 3,389,478 - Pf6N2E2_2899 0.55 -0.9 3,389,478 - Pf6N2E2_2899 0.55 -0.9 3,389,478 - Pf6N2E2_2899 0.55 +0.0 3,389,478 - Pf6N2E2_2899 0.55 -1.8 3,389,507 + Pf6N2E2_2899 0.57 -0.7 3,389,508 - Pf6N2E2_2899 0.58 -3.0 3,389,864 + -1.7 3,389,864 + -3.0 3,389,864 + -4.7 3,389,864 + -0.0 3,389,865 - -0.9 3,389,902 + -0.5 3,389,930 + -0.6 3,389,930 + -1.4 3,389,931 - -0.2 3,389,931 - -0.3 3,389,963 + -2.4 3,389,963 + -1.7 3,389,964 - -3.8 3,389,964 - -3.4 3,390,294 + Pf6N2E2_2900 0.22 -0.1 3,390,295 - Pf6N2E2_2900 0.22 +0.5 3,390,431 - Pf6N2E2_2900 0.48 +0.7 3,390,588 + Pf6N2E2_2900 0.78 +1.0 3,390,589 - Pf6N2E2_2900 0.78 -0.0 3,390,589 - Pf6N2E2_2900 0.78 +0.2 3,390,683 + +0.0 3,390,724 + +0.7 3,390,724 + -0.5 3,390,725 - +0.7 3,390,725 - -0.7 3,390,725 - +0.3 3,390,725 - -1.8 3,390,734 - -1.6 3,390,755 + -0.3 3,390,755 + +1.0 3,390,756 - +0.9 3,390,756 - +0.6 3,390,764 + -1.8 3,390,765 - -1.3 3,390,765 - +0.5 3,390,783 + +0.2 3,390,784 - +0.8 3,390,787 - -0.7
Or see this region's nucleotide sequence