Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2691 and Pf6N2E2_2692 overlap by 7 nucleotides Pf6N2E2_2692 and Pf6N2E2_2693 are separated by 192 nucleotides Pf6N2E2_2693 and Pf6N2E2_2694 are separated by 248 nucleotides
Pf6N2E2_2691 - FIG00955837: hypothetical protein, at 3,181,119 to 3,181,355
_2691
Pf6N2E2_2692 - RNA polymerase sigma factor RpoE, at 3,181,349 to 3,181,960
_2692
Pf6N2E2_2693 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 3,182,153 to 3,183,274
_2693
Pf6N2E2_2694 - ATP-dependent RNA helicase HrpA (EC 3.6.4.13), at 3,183,523 to 3,187,434
_2694
Position (kb)
3182
3183
3184 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3181.315 kb on + strand, within Pf6N2E2_2691 at 3181.441 kb on + strand, within Pf6N2E2_2692 at 3181.707 kb on + strand, within Pf6N2E2_2692 at 3181.707 kb on + strand, within Pf6N2E2_2692 at 3181.851 kb on + strand, within Pf6N2E2_2692 at 3181.852 kb on - strand, within Pf6N2E2_2692 at 3181.897 kb on + strand, within Pf6N2E2_2692 at 3181.897 kb on + strand, within Pf6N2E2_2692 at 3181.898 kb on - strand, within Pf6N2E2_2692 at 3181.900 kb on - strand at 3181.900 kb on - strand at 3181.900 kb on - strand at 3181.900 kb on - strand at 3182.112 kb on - strand at 3182.162 kb on - strand at 3182.244 kb on + strand at 3182.245 kb on - strand at 3182.245 kb on - strand at 3182.881 kb on - strand, within Pf6N2E2_2693 at 3182.881 kb on - strand, within Pf6N2E2_2693 at 3183.186 kb on + strand at 3183.186 kb on + strand at 3183.186 kb on + strand at 3183.186 kb on + strand at 3183.186 kb on + strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.187 kb on - strand at 3183.191 kb on - strand at 3183.191 kb on - strand at 3183.191 kb on - strand at 3183.240 kb on + strand at 3183.240 kb on + strand at 3183.240 kb on + strand at 3183.241 kb on - strand at 3183.241 kb on - strand at 3183.241 kb on - strand at 3183.241 kb on - strand at 3183.241 kb on - strand at 3183.241 kb on - strand at 3183.269 kb on - strand at 3183.320 kb on + strand at 3183.320 kb on + strand at 3183.321 kb on - strand at 3183.321 kb on - strand at 3183.321 kb on - strand at 3183.321 kb on - strand at 3183.321 kb on - strand at 3183.326 kb on + strand at 3183.327 kb on - strand at 3183.424 kb on + strand at 3183.424 kb on + strand at 3183.424 kb on + strand at 3183.425 kb on - strand at 3183.425 kb on - strand at 3183.425 kb on - strand at 3183.425 kb on - strand at 3183.427 kb on - strand at 3183.477 kb on + strand at 3183.477 kb on + strand at 3183.477 kb on + strand at 3183.477 kb on + strand at 3183.478 kb on - strand at 3183.478 kb on - strand at 3183.478 kb on - strand at 3183.478 kb on - strand at 3183.478 kb on - strand at 3183.478 kb on - strand at 3183.478 kb on - strand at 3183.480 kb on + strand at 3183.480 kb on + strand at 3183.480 kb on + strand at 3183.481 kb on - strand at 3183.481 kb on - strand at 3183.481 kb on - strand at 3183.481 kb on - strand at 3183.484 kb on + strand at 3183.845 kb on + strand at 3183.846 kb on - strand at 3183.874 kb on - strand at 3184.133 kb on + strand, within Pf6N2E2_2694
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,181,315 + Pf6N2E2_2691 0.83 -1.9 3,181,441 + Pf6N2E2_2692 0.15 +0.6 3,181,707 + Pf6N2E2_2692 0.58 +1.5 3,181,707 + Pf6N2E2_2692 0.58 -0.5 3,181,851 + Pf6N2E2_2692 0.82 +1.2 3,181,852 - Pf6N2E2_2692 0.82 +0.3 3,181,897 + Pf6N2E2_2692 0.90 +0.3 3,181,897 + Pf6N2E2_2692 0.90 +1.0 3,181,898 - Pf6N2E2_2692 0.90 +0.5 3,181,900 - +2.3 3,181,900 - +0.3 3,181,900 - +0.5 3,181,900 - +0.9 3,182,112 - -1.6 3,182,162 - -0.7 3,182,244 + +1.2 3,182,245 - +0.2 3,182,245 - -3.9 3,182,881 - Pf6N2E2_2693 0.65 -1.8 3,182,881 - Pf6N2E2_2693 0.65 -0.2 3,183,186 + +0.2 3,183,186 + +1.9 3,183,186 + -1.4 3,183,186 + -0.4 3,183,186 + +1.2 3,183,187 - +0.1 3,183,187 - -0.9 3,183,187 - +1.9 3,183,187 - +0.7 3,183,187 - -1.0 3,183,187 - +1.0 3,183,187 - -2.9 3,183,187 - -3.7 3,183,187 - -0.3 3,183,187 - -2.1 3,183,187 - +0.2 3,183,187 - +0.7 3,183,191 - -1.0 3,183,191 - -0.1 3,183,191 - +0.3 3,183,240 + -1.9 3,183,240 + -2.3 3,183,240 + -1.5 3,183,241 - +1.9 3,183,241 - -2.7 3,183,241 - -2.3 3,183,241 - +0.1 3,183,241 - +0.9 3,183,241 - -0.7 3,183,269 - -2.3 3,183,320 + +1.8 3,183,320 + -0.5 3,183,321 - +0.4 3,183,321 - +0.2 3,183,321 - +1.5 3,183,321 - +0.3 3,183,321 - +1.4 3,183,326 + -0.0 3,183,327 - +0.6 3,183,424 + +1.0 3,183,424 + -0.9 3,183,424 + -0.4 3,183,425 - +0.7 3,183,425 - +0.7 3,183,425 - -2.1 3,183,425 - -0.4 3,183,427 - +0.1 3,183,477 + +0.9 3,183,477 + -0.4 3,183,477 + -0.3 3,183,477 + -0.5 3,183,478 - +0.3 3,183,478 - +1.4 3,183,478 - -2.1 3,183,478 - +0.6 3,183,478 - +0.4 3,183,478 - -1.2 3,183,478 - +0.4 3,183,480 + +0.5 3,183,480 + -0.5 3,183,480 + +0.3 3,183,481 - +0.1 3,183,481 - +0.3 3,183,481 - +0.4 3,183,481 - +0.4 3,183,484 + -3.7 3,183,845 + -0.4 3,183,846 - +0.8 3,183,874 - -0.7 3,184,133 + Pf6N2E2_2694 0.16 +0.6
Or see this region's nucleotide sequence