Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2693

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_2691 and Pf6N2E2_2692 overlap by 7 nucleotidesPf6N2E2_2692 and Pf6N2E2_2693 are separated by 192 nucleotidesPf6N2E2_2693 and Pf6N2E2_2694 are separated by 248 nucleotides Pf6N2E2_2691 - FIG00955837: hypothetical protein, at 3,181,119 to 3,181,355 _2691 Pf6N2E2_2692 - RNA polymerase sigma factor RpoE, at 3,181,349 to 3,181,960 _2692 Pf6N2E2_2693 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 3,182,153 to 3,183,274 _2693 Pf6N2E2_2694 - ATP-dependent RNA helicase HrpA (EC 3.6.4.13), at 3,183,523 to 3,187,434 _2694 Position (kb) 3182 3183 3184Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3181.315 kb on + strand, within Pf6N2E2_2691at 3181.441 kb on + strand, within Pf6N2E2_2692at 3181.707 kb on + strand, within Pf6N2E2_2692at 3181.707 kb on + strand, within Pf6N2E2_2692at 3181.851 kb on + strand, within Pf6N2E2_2692at 3181.852 kb on - strand, within Pf6N2E2_2692at 3181.897 kb on + strand, within Pf6N2E2_2692at 3181.897 kb on + strand, within Pf6N2E2_2692at 3181.898 kb on - strand, within Pf6N2E2_2692at 3181.900 kb on - strandat 3181.900 kb on - strandat 3181.900 kb on - strandat 3181.900 kb on - strandat 3182.112 kb on - strandat 3182.162 kb on - strandat 3182.244 kb on + strandat 3182.245 kb on - strandat 3182.245 kb on - strandat 3182.881 kb on - strand, within Pf6N2E2_2693at 3182.881 kb on - strand, within Pf6N2E2_2693at 3183.186 kb on + strandat 3183.186 kb on + strandat 3183.186 kb on + strandat 3183.186 kb on + strandat 3183.186 kb on + strandat 3183.187 kb on - strandat 3183.187 kb on - strandat 3183.187 kb on - strandat 3183.187 kb on - strandat 3183.187 kb on - strandat 3183.187 kb on - strandat 3183.187 kb on - strandat 3183.187 kb on - strandat 3183.187 kb on - strandat 3183.187 kb on - strandat 3183.187 kb on - strandat 3183.187 kb on - strandat 3183.191 kb on - strandat 3183.191 kb on - strandat 3183.191 kb on - strandat 3183.240 kb on + strandat 3183.240 kb on + strandat 3183.240 kb on + strandat 3183.241 kb on - strandat 3183.241 kb on - strandat 3183.241 kb on - strandat 3183.241 kb on - strandat 3183.241 kb on - strandat 3183.241 kb on - strandat 3183.269 kb on - strandat 3183.320 kb on + strandat 3183.320 kb on + strandat 3183.321 kb on - strandat 3183.321 kb on - strandat 3183.321 kb on - strandat 3183.321 kb on - strandat 3183.321 kb on - strandat 3183.326 kb on + strandat 3183.327 kb on - strandat 3183.424 kb on + strandat 3183.424 kb on + strandat 3183.424 kb on + strandat 3183.425 kb on - strandat 3183.425 kb on - strandat 3183.425 kb on - strandat 3183.425 kb on - strandat 3183.427 kb on - strandat 3183.477 kb on + strandat 3183.477 kb on + strandat 3183.477 kb on + strandat 3183.477 kb on + strandat 3183.478 kb on - strandat 3183.478 kb on - strandat 3183.478 kb on - strandat 3183.478 kb on - strandat 3183.478 kb on - strandat 3183.478 kb on - strandat 3183.478 kb on - strandat 3183.480 kb on + strandat 3183.480 kb on + strandat 3183.480 kb on + strandat 3183.481 kb on - strandat 3183.481 kb on - strandat 3183.481 kb on - strandat 3183.481 kb on - strandat 3183.484 kb on + strandat 3183.845 kb on + strandat 3183.846 kb on - strandat 3183.874 kb on - strandat 3184.133 kb on + strand, within Pf6N2E2_2694

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
3,181,315 + Pf6N2E2_2691 0.83 -1.9
3,181,441 + Pf6N2E2_2692 0.15 +0.6
3,181,707 + Pf6N2E2_2692 0.58 +1.5
3,181,707 + Pf6N2E2_2692 0.58 -0.5
3,181,851 + Pf6N2E2_2692 0.82 +1.2
3,181,852 - Pf6N2E2_2692 0.82 +0.3
3,181,897 + Pf6N2E2_2692 0.90 +0.3
3,181,897 + Pf6N2E2_2692 0.90 +1.0
3,181,898 - Pf6N2E2_2692 0.90 +0.5
3,181,900 - +2.3
3,181,900 - +0.3
3,181,900 - +0.5
3,181,900 - +0.9
3,182,112 - -1.6
3,182,162 - -0.7
3,182,244 + +1.2
3,182,245 - +0.2
3,182,245 - -3.9
3,182,881 - Pf6N2E2_2693 0.65 -1.8
3,182,881 - Pf6N2E2_2693 0.65 -0.2
3,183,186 + +0.2
3,183,186 + +1.9
3,183,186 + -1.4
3,183,186 + -0.4
3,183,186 + +1.2
3,183,187 - +0.1
3,183,187 - -0.9
3,183,187 - +1.9
3,183,187 - +0.7
3,183,187 - -1.0
3,183,187 - +1.0
3,183,187 - -2.9
3,183,187 - -3.7
3,183,187 - -0.3
3,183,187 - -2.1
3,183,187 - +0.2
3,183,187 - +0.7
3,183,191 - -1.0
3,183,191 - -0.1
3,183,191 - +0.3
3,183,240 + -1.9
3,183,240 + -2.3
3,183,240 + -1.5
3,183,241 - +1.9
3,183,241 - -2.7
3,183,241 - -2.3
3,183,241 - +0.1
3,183,241 - +0.9
3,183,241 - -0.7
3,183,269 - -2.3
3,183,320 + +1.8
3,183,320 + -0.5
3,183,321 - +0.4
3,183,321 - +0.2
3,183,321 - +1.5
3,183,321 - +0.3
3,183,321 - +1.4
3,183,326 + -0.0
3,183,327 - +0.6
3,183,424 + +1.0
3,183,424 + -0.9
3,183,424 + -0.4
3,183,425 - +0.7
3,183,425 - +0.7
3,183,425 - -2.1
3,183,425 - -0.4
3,183,427 - +0.1
3,183,477 + +0.9
3,183,477 + -0.4
3,183,477 + -0.3
3,183,477 + -0.5
3,183,478 - +0.3
3,183,478 - +1.4
3,183,478 - -2.1
3,183,478 - +0.6
3,183,478 - +0.4
3,183,478 - -1.2
3,183,478 - +0.4
3,183,480 + +0.5
3,183,480 + -0.5
3,183,480 + +0.3
3,183,481 - +0.1
3,183,481 - +0.3
3,183,481 - +0.4
3,183,481 - +0.4
3,183,484 + -3.7
3,183,845 + -0.4
3,183,846 - +0.8
3,183,874 - -0.7
3,184,133 + Pf6N2E2_2694 0.16 +0.6

Or see this region's nucleotide sequence