Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_260

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_259 and Pf6N2E2_260 are separated by 56 nucleotidesPf6N2E2_260 and Pf6N2E2_261 are separated by 198 nucleotides Pf6N2E2_259 - Transcriptional regulator, LysR family, at 323,206 to 324,084 _259 Pf6N2E2_260 - Regulator of cell morphogenesis and NO signaling, at 324,141 to 324,617 _260 Pf6N2E2_261 - Aminobutyraldehyde dehydrogenase (EC 1.2.1.19), at 324,816 to 325,925 _261 Position (kb) 324 325Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 323.194 kb on - strandat 323.194 kb on - strandat 323.620 kb on + strand, within Pf6N2E2_259at 323.620 kb on + strand, within Pf6N2E2_259at 323.620 kb on + strand, within Pf6N2E2_259at 323.621 kb on - strand, within Pf6N2E2_259at 323.698 kb on + strand, within Pf6N2E2_259at 323.698 kb on + strand, within Pf6N2E2_259at 323.699 kb on - strand, within Pf6N2E2_259at 323.716 kb on + strand, within Pf6N2E2_259at 323.914 kb on + strand, within Pf6N2E2_259at 323.914 kb on + strand, within Pf6N2E2_259at 323.914 kb on + strand, within Pf6N2E2_259at 323.915 kb on - strand, within Pf6N2E2_259at 323.915 kb on - strand, within Pf6N2E2_259at 323.915 kb on - strand, within Pf6N2E2_259at 323.915 kb on - strand, within Pf6N2E2_259at 323.915 kb on - strand, within Pf6N2E2_259at 324.083 kb on - strandat 324.083 kb on - strandat 324.128 kb on + strandat 324.128 kb on + strandat 324.129 kb on - strandat 324.179 kb on - strandat 324.383 kb on + strand, within Pf6N2E2_260at 324.406 kb on + strand, within Pf6N2E2_260at 324.406 kb on + strand, within Pf6N2E2_260at 324.407 kb on - strand, within Pf6N2E2_260at 324.409 kb on + strand, within Pf6N2E2_260at 324.409 kb on + strand, within Pf6N2E2_260at 324.410 kb on - strand, within Pf6N2E2_260at 324.617 kb on + strandat 324.617 kb on + strandat 324.617 kb on + strandat 324.617 kb on + strandat 324.617 kb on + strandat 324.617 kb on + strandat 324.617 kb on + strandat 324.618 kb on - strandat 324.618 kb on - strandat 324.618 kb on - strandat 324.618 kb on - strandat 324.621 kb on + strandat 324.621 kb on + strandat 324.621 kb on + strandat 324.621 kb on + strandat 324.621 kb on + strandat 324.635 kb on + strandat 325.034 kb on - strand, within Pf6N2E2_261at 325.228 kb on + strand, within Pf6N2E2_261at 325.228 kb on + strand, within Pf6N2E2_261at 325.229 kb on - strand, within Pf6N2E2_261at 325.408 kb on - strand, within Pf6N2E2_261at 325.507 kb on + strand, within Pf6N2E2_261at 325.507 kb on + strand, within Pf6N2E2_261at 325.508 kb on - strand, within Pf6N2E2_261at 325.609 kb on - strand, within Pf6N2E2_261at 325.609 kb on - strand, within Pf6N2E2_261

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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323,194 - +0.7
323,194 - +0.3
323,620 + Pf6N2E2_259 0.47 +1.2
323,620 + Pf6N2E2_259 0.47 -3.1
323,620 + Pf6N2E2_259 0.47 +0.6
323,621 - Pf6N2E2_259 0.47 -1.3
323,698 + Pf6N2E2_259 0.56 +0.1
323,698 + Pf6N2E2_259 0.56 -1.8
323,699 - Pf6N2E2_259 0.56 +0.6
323,716 + Pf6N2E2_259 0.58 +0.9
323,914 + Pf6N2E2_259 0.81 +1.6
323,914 + Pf6N2E2_259 0.81 -1.7
323,914 + Pf6N2E2_259 0.81 -0.5
323,915 - Pf6N2E2_259 0.81 -3.3
323,915 - Pf6N2E2_259 0.81 +0.8
323,915 - Pf6N2E2_259 0.81 +0.0
323,915 - Pf6N2E2_259 0.81 -2.3
323,915 - Pf6N2E2_259 0.81 +0.5
324,083 - -1.5
324,083 - -0.7
324,128 + -1.8
324,128 + +1.4
324,129 - +1.2
324,179 - -0.6
324,383 + Pf6N2E2_260 0.51 +0.0
324,406 + Pf6N2E2_260 0.56 -2.1
324,406 + Pf6N2E2_260 0.56 -3.8
324,407 - Pf6N2E2_260 0.56 -1.4
324,409 + Pf6N2E2_260 0.56 -1.5
324,409 + Pf6N2E2_260 0.56 +0.9
324,410 - Pf6N2E2_260 0.56 -1.8
324,617 + +0.5
324,617 + -0.2
324,617 + -1.4
324,617 + +0.1
324,617 + +0.1
324,617 + -0.7
324,617 + +0.2
324,618 - -0.9
324,618 - +0.8
324,618 - -3.1
324,618 - +0.1
324,621 + -0.4
324,621 + +0.2
324,621 + -2.5
324,621 + -2.8
324,621 + +0.8
324,635 + +0.4
325,034 - Pf6N2E2_261 0.20 -1.2
325,228 + Pf6N2E2_261 0.37 -0.2
325,228 + Pf6N2E2_261 0.37 -1.0
325,229 - Pf6N2E2_261 0.37 -0.3
325,408 - Pf6N2E2_261 0.53 +0.1
325,507 + Pf6N2E2_261 0.62 +0.1
325,507 + Pf6N2E2_261 0.62 -0.9
325,508 - Pf6N2E2_261 0.62 -0.4
325,609 - Pf6N2E2_261 0.71 -2.5
325,609 - Pf6N2E2_261 0.71 +0.8

Or see this region's nucleotide sequence