Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2480

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2478 and Pf6N2E2_2479 are separated by 34 nucleotidesPf6N2E2_2479 and Pf6N2E2_2480 are separated by 8 nucleotidesPf6N2E2_2480 and Pf6N2E2_2481 are separated by 299 nucleotidesPf6N2E2_2481 and Pf6N2E2_2482 are separated by 100 nucleotides Pf6N2E2_2478 - FIG00809136: hypothetical protein, at 2,923,643 to 2,926,147 _2478 Pf6N2E2_2479 - Transcription elongation factor GreB, at 2,926,182 to 2,926,679 _2479 Pf6N2E2_2480 - FIG00957636: hypothetical protein, at 2,926,688 to 2,926,945 _2480 Pf6N2E2_2481 - Membrane protein, distant similarity to thiosulphate:quinone oxidoreductase DoxD, at 2,927,245 to 2,927,679 _2481 Pf6N2E2_2482 - Transglycosylase, Slt family, at 2,927,780 to 2,929,201 _2482 Position (kb) 2926 2927Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2925.782 kb on + strand, within Pf6N2E2_2478at 2925.782 kb on + strand, within Pf6N2E2_2478at 2925.782 kb on + strand, within Pf6N2E2_2478at 2925.782 kb on + strand, within Pf6N2E2_2478at 2925.782 kb on + strand, within Pf6N2E2_2478at 2925.783 kb on - strand, within Pf6N2E2_2478at 2925.783 kb on - strand, within Pf6N2E2_2478at 2925.783 kb on - strand, within Pf6N2E2_2478at 2925.783 kb on - strand, within Pf6N2E2_2478at 2925.783 kb on - strand, within Pf6N2E2_2478at 2925.783 kb on - strand, within Pf6N2E2_2478at 2925.783 kb on - strand, within Pf6N2E2_2478at 2925.858 kb on + strandat 2925.858 kb on + strand, within Pf6N2E2_2478at 2925.859 kb on - strand, within Pf6N2E2_2478at 2925.874 kb on - strand, within Pf6N2E2_2478at 2926.131 kb on + strandat 2926.131 kb on + strandat 2926.148 kb on + strandat 2926.148 kb on + strandat 2926.148 kb on + strandat 2926.168 kb on + strandat 2926.169 kb on - strandat 2926.169 kb on - strandat 2926.169 kb on - strandat 2926.169 kb on - strandat 2926.350 kb on + strand, within Pf6N2E2_2479at 2926.350 kb on + strand, within Pf6N2E2_2479at 2926.350 kb on + strand, within Pf6N2E2_2479at 2926.350 kb on + strand, within Pf6N2E2_2479at 2926.357 kb on - strand, within Pf6N2E2_2479at 2926.464 kb on + strand, within Pf6N2E2_2479at 2926.465 kb on - strand, within Pf6N2E2_2479at 2926.653 kb on + strandat 2926.654 kb on - strandat 2926.654 kb on - strandat 2926.672 kb on - strandat 2926.864 kb on + strand, within Pf6N2E2_2480at 2926.864 kb on + strand, within Pf6N2E2_2480at 2926.973 kb on + strandat 2926.973 kb on + strandat 2926.973 kb on + strandat 2926.973 kb on + strandat 2926.973 kb on + strandat 2926.973 kb on + strandat 2926.973 kb on + strandat 2926.973 kb on + strandat 2926.974 kb on - strandat 2926.974 kb on - strandat 2926.974 kb on - strandat 2926.974 kb on - strandat 2927.107 kb on + strandat 2927.107 kb on + strandat 2927.130 kb on + strandat 2927.130 kb on + strandat 2927.130 kb on + strandat 2927.131 kb on - strandat 2927.131 kb on - strandat 2927.162 kb on + strandat 2927.162 kb on + strandat 2927.214 kb on - strandat 2927.305 kb on - strand, within Pf6N2E2_2481at 2927.337 kb on - strand, within Pf6N2E2_2481at 2927.599 kb on + strand, within Pf6N2E2_2481at 2927.599 kb on + strand, within Pf6N2E2_2481at 2927.599 kb on + strand, within Pf6N2E2_2481at 2927.600 kb on - strand, within Pf6N2E2_2481at 2927.600 kb on - strand, within Pf6N2E2_2481at 2927.661 kb on + strandat 2927.662 kb on - strandat 2927.662 kb on - strandat 2927.694 kb on - strandat 2927.847 kb on + strandat 2927.847 kb on + strandat 2927.847 kb on + strandat 2927.848 kb on - strandat 2927.848 kb on - strandat 2927.848 kb on - strandat 2927.848 kb on - strandat 2927.848 kb on - strandat 2927.850 kb on + strandat 2927.851 kb on - strandat 2927.851 kb on - strandat 2927.854 kb on + strandat 2927.854 kb on + strandat 2927.854 kb on + strandat 2927.854 kb on + strandat 2927.855 kb on - strandat 2927.855 kb on - strandat 2927.855 kb on - strandat 2927.863 kb on + strandat 2927.863 kb on + strandat 2927.863 kb on + strandat 2927.864 kb on - strandat 2927.864 kb on - strandat 2927.866 kb on + strandat 2927.866 kb on + strandat 2927.867 kb on - strandat 2927.871 kb on + strandat 2927.871 kb on + strandat 2927.871 kb on + strandat 2927.872 kb on - strandat 2927.872 kb on - strandat 2927.872 kb on - strandat 2927.872 kb on - strandat 2927.872 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,925,782 + Pf6N2E2_2478 0.85 -0.5
2,925,782 + Pf6N2E2_2478 0.85 +1.3
2,925,782 + Pf6N2E2_2478 0.85 -1.9
2,925,782 + Pf6N2E2_2478 0.85 -3.6
2,925,782 + Pf6N2E2_2478 0.85 +0.8
2,925,783 - Pf6N2E2_2478 0.85 -2.4
2,925,783 - Pf6N2E2_2478 0.85 +1.4
2,925,783 - Pf6N2E2_2478 0.85 -0.1
2,925,783 - Pf6N2E2_2478 0.85 -1.3
2,925,783 - Pf6N2E2_2478 0.85 +0.2
2,925,783 - Pf6N2E2_2478 0.85 -0.2
2,925,783 - Pf6N2E2_2478 0.85 -4.3
2,925,858 + +0.8
2,925,858 + Pf6N2E2_2478 0.88 -2.7
2,925,859 - Pf6N2E2_2478 0.88 -0.1
2,925,874 - Pf6N2E2_2478 0.89 -0.3
2,926,131 + +0.2
2,926,131 + +0.9
2,926,148 + -2.2
2,926,148 + -0.4
2,926,148 + +3.5
2,926,168 + +1.6
2,926,169 - +1.2
2,926,169 - -3.8
2,926,169 - -0.1
2,926,169 - -3.5
2,926,350 + Pf6N2E2_2479 0.34 -0.5
2,926,350 + Pf6N2E2_2479 0.34 -0.9
2,926,350 + Pf6N2E2_2479 0.34 +1.1
2,926,350 + Pf6N2E2_2479 0.34 +0.2
2,926,357 - Pf6N2E2_2479 0.35 -0.2
2,926,464 + Pf6N2E2_2479 0.57 +3.0
2,926,465 - Pf6N2E2_2479 0.57 -2.0
2,926,653 + -0.1
2,926,654 - -2.0
2,926,654 - -0.1
2,926,672 - -0.5
2,926,864 + Pf6N2E2_2480 0.68 +0.8
2,926,864 + Pf6N2E2_2480 0.68 -1.1
2,926,973 + -0.3
2,926,973 + -1.4
2,926,973 + +1.2
2,926,973 + -0.7
2,926,973 + -0.3
2,926,973 + +0.3
2,926,973 + +0.5
2,926,973 + +1.7
2,926,974 - +0.6
2,926,974 - -0.4
2,926,974 - -0.5
2,926,974 - -1.3
2,927,107 + +2.0
2,927,107 + -0.0
2,927,130 + -0.4
2,927,130 + -1.2
2,927,130 + -3.7
2,927,131 - +1.0
2,927,131 - +1.1
2,927,162 + +1.0
2,927,162 + +0.3
2,927,214 - -0.3
2,927,305 - Pf6N2E2_2481 0.14 +1.1
2,927,337 - Pf6N2E2_2481 0.21 +0.9
2,927,599 + Pf6N2E2_2481 0.81 +0.2
2,927,599 + Pf6N2E2_2481 0.81 +1.5
2,927,599 + Pf6N2E2_2481 0.81 -0.1
2,927,600 - Pf6N2E2_2481 0.82 -0.9
2,927,600 - Pf6N2E2_2481 0.82 -0.2
2,927,661 + +0.4
2,927,662 - +0.8
2,927,662 - +0.3
2,927,694 - +2.2
2,927,847 + +0.8
2,927,847 + +0.4
2,927,847 + +1.3
2,927,848 - -2.9
2,927,848 - -3.1
2,927,848 - +0.4
2,927,848 - -2.5
2,927,848 - +1.0
2,927,850 + -1.8
2,927,851 - +1.3
2,927,851 - -0.4
2,927,854 + +0.7
2,927,854 + -0.6
2,927,854 + -3.1
2,927,854 + -1.3
2,927,855 - -1.5
2,927,855 - +1.4
2,927,855 - +0.1
2,927,863 + -1.0
2,927,863 + -1.2
2,927,863 + -1.4
2,927,864 - +0.8
2,927,864 - -0.4
2,927,866 + +1.2
2,927,866 + -2.0
2,927,867 - -1.5
2,927,871 + +0.5
2,927,871 + -0.1
2,927,871 + +0.6
2,927,872 - -0.9
2,927,872 - +0.1
2,927,872 - +0.1
2,927,872 - +0.6
2,927,872 - +0.0

Or see this region's nucleotide sequence