Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2478 and Pf6N2E2_2479 are separated by 34 nucleotides Pf6N2E2_2479 and Pf6N2E2_2480 are separated by 8 nucleotides Pf6N2E2_2480 and Pf6N2E2_2481 are separated by 299 nucleotides Pf6N2E2_2481 and Pf6N2E2_2482 are separated by 100 nucleotides
Pf6N2E2_2478 - FIG00809136: hypothetical protein, at 2,923,643 to 2,926,147
_2478
Pf6N2E2_2479 - Transcription elongation factor GreB, at 2,926,182 to 2,926,679
_2479
Pf6N2E2_2480 - FIG00957636: hypothetical protein, at 2,926,688 to 2,926,945
_2480
Pf6N2E2_2481 - Membrane protein, distant similarity to thiosulphate:quinone oxidoreductase DoxD, at 2,927,245 to 2,927,679
_2481
Pf6N2E2_2482 - Transglycosylase, Slt family, at 2,927,780 to 2,929,201
_2482
Position (kb)
2926
2927 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2925.782 kb on + strand, within Pf6N2E2_2478 at 2925.782 kb on + strand, within Pf6N2E2_2478 at 2925.782 kb on + strand, within Pf6N2E2_2478 at 2925.782 kb on + strand, within Pf6N2E2_2478 at 2925.782 kb on + strand, within Pf6N2E2_2478 at 2925.783 kb on - strand, within Pf6N2E2_2478 at 2925.783 kb on - strand, within Pf6N2E2_2478 at 2925.783 kb on - strand, within Pf6N2E2_2478 at 2925.783 kb on - strand, within Pf6N2E2_2478 at 2925.783 kb on - strand, within Pf6N2E2_2478 at 2925.783 kb on - strand, within Pf6N2E2_2478 at 2925.783 kb on - strand, within Pf6N2E2_2478 at 2925.858 kb on + strand at 2925.858 kb on + strand, within Pf6N2E2_2478 at 2925.859 kb on - strand, within Pf6N2E2_2478 at 2925.874 kb on - strand, within Pf6N2E2_2478 at 2926.131 kb on + strand at 2926.131 kb on + strand at 2926.148 kb on + strand at 2926.148 kb on + strand at 2926.148 kb on + strand at 2926.168 kb on + strand at 2926.169 kb on - strand at 2926.169 kb on - strand at 2926.169 kb on - strand at 2926.169 kb on - strand at 2926.350 kb on + strand, within Pf6N2E2_2479 at 2926.350 kb on + strand, within Pf6N2E2_2479 at 2926.350 kb on + strand, within Pf6N2E2_2479 at 2926.350 kb on + strand, within Pf6N2E2_2479 at 2926.357 kb on - strand, within Pf6N2E2_2479 at 2926.464 kb on + strand, within Pf6N2E2_2479 at 2926.465 kb on - strand, within Pf6N2E2_2479 at 2926.653 kb on + strand at 2926.654 kb on - strand at 2926.654 kb on - strand at 2926.672 kb on - strand at 2926.864 kb on + strand, within Pf6N2E2_2480 at 2926.864 kb on + strand, within Pf6N2E2_2480 at 2926.973 kb on + strand at 2926.973 kb on + strand at 2926.973 kb on + strand at 2926.973 kb on + strand at 2926.973 kb on + strand at 2926.973 kb on + strand at 2926.973 kb on + strand at 2926.973 kb on + strand at 2926.974 kb on - strand at 2926.974 kb on - strand at 2926.974 kb on - strand at 2926.974 kb on - strand at 2927.107 kb on + strand at 2927.107 kb on + strand at 2927.130 kb on + strand at 2927.130 kb on + strand at 2927.130 kb on + strand at 2927.131 kb on - strand at 2927.131 kb on - strand at 2927.162 kb on + strand at 2927.162 kb on + strand at 2927.214 kb on - strand at 2927.305 kb on - strand, within Pf6N2E2_2481 at 2927.337 kb on - strand, within Pf6N2E2_2481 at 2927.599 kb on + strand, within Pf6N2E2_2481 at 2927.599 kb on + strand, within Pf6N2E2_2481 at 2927.599 kb on + strand, within Pf6N2E2_2481 at 2927.600 kb on - strand, within Pf6N2E2_2481 at 2927.600 kb on - strand, within Pf6N2E2_2481 at 2927.661 kb on + strand at 2927.662 kb on - strand at 2927.662 kb on - strand at 2927.694 kb on - strand at 2927.847 kb on + strand at 2927.847 kb on + strand at 2927.847 kb on + strand at 2927.848 kb on - strand at 2927.848 kb on - strand at 2927.848 kb on - strand at 2927.848 kb on - strand at 2927.848 kb on - strand at 2927.850 kb on + strand at 2927.851 kb on - strand at 2927.851 kb on - strand at 2927.854 kb on + strand at 2927.854 kb on + strand at 2927.854 kb on + strand at 2927.854 kb on + strand at 2927.855 kb on - strand at 2927.855 kb on - strand at 2927.855 kb on - strand at 2927.863 kb on + strand at 2927.863 kb on + strand at 2927.863 kb on + strand at 2927.864 kb on - strand at 2927.864 kb on - strand at 2927.866 kb on + strand at 2927.866 kb on + strand at 2927.867 kb on - strand at 2927.871 kb on + strand at 2927.871 kb on + strand at 2927.871 kb on + strand at 2927.872 kb on - strand at 2927.872 kb on - strand at 2927.872 kb on - strand at 2927.872 kb on - strand at 2927.872 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 2,925,782 + Pf6N2E2_2478 0.85 -0.5 2,925,782 + Pf6N2E2_2478 0.85 +1.3 2,925,782 + Pf6N2E2_2478 0.85 -1.9 2,925,782 + Pf6N2E2_2478 0.85 -3.6 2,925,782 + Pf6N2E2_2478 0.85 +0.8 2,925,783 - Pf6N2E2_2478 0.85 -2.4 2,925,783 - Pf6N2E2_2478 0.85 +1.4 2,925,783 - Pf6N2E2_2478 0.85 -0.1 2,925,783 - Pf6N2E2_2478 0.85 -1.3 2,925,783 - Pf6N2E2_2478 0.85 +0.2 2,925,783 - Pf6N2E2_2478 0.85 -0.2 2,925,783 - Pf6N2E2_2478 0.85 -4.3 2,925,858 + +0.8 2,925,858 + Pf6N2E2_2478 0.88 -2.7 2,925,859 - Pf6N2E2_2478 0.88 -0.1 2,925,874 - Pf6N2E2_2478 0.89 -0.3 2,926,131 + +0.2 2,926,131 + +0.9 2,926,148 + -2.2 2,926,148 + -0.4 2,926,148 + +3.5 2,926,168 + +1.6 2,926,169 - +1.2 2,926,169 - -3.8 2,926,169 - -0.1 2,926,169 - -3.5 2,926,350 + Pf6N2E2_2479 0.34 -0.5 2,926,350 + Pf6N2E2_2479 0.34 -0.9 2,926,350 + Pf6N2E2_2479 0.34 +1.1 2,926,350 + Pf6N2E2_2479 0.34 +0.2 2,926,357 - Pf6N2E2_2479 0.35 -0.2 2,926,464 + Pf6N2E2_2479 0.57 +3.0 2,926,465 - Pf6N2E2_2479 0.57 -2.0 2,926,653 + -0.1 2,926,654 - -2.0 2,926,654 - -0.1 2,926,672 - -0.5 2,926,864 + Pf6N2E2_2480 0.68 +0.8 2,926,864 + Pf6N2E2_2480 0.68 -1.1 2,926,973 + -0.3 2,926,973 + -1.4 2,926,973 + +1.2 2,926,973 + -0.7 2,926,973 + -0.3 2,926,973 + +0.3 2,926,973 + +0.5 2,926,973 + +1.7 2,926,974 - +0.6 2,926,974 - -0.4 2,926,974 - -0.5 2,926,974 - -1.3 2,927,107 + +2.0 2,927,107 + -0.0 2,927,130 + -0.4 2,927,130 + -1.2 2,927,130 + -3.7 2,927,131 - +1.0 2,927,131 - +1.1 2,927,162 + +1.0 2,927,162 + +0.3 2,927,214 - -0.3 2,927,305 - Pf6N2E2_2481 0.14 +1.1 2,927,337 - Pf6N2E2_2481 0.21 +0.9 2,927,599 + Pf6N2E2_2481 0.81 +0.2 2,927,599 + Pf6N2E2_2481 0.81 +1.5 2,927,599 + Pf6N2E2_2481 0.81 -0.1 2,927,600 - Pf6N2E2_2481 0.82 -0.9 2,927,600 - Pf6N2E2_2481 0.82 -0.2 2,927,661 + +0.4 2,927,662 - +0.8 2,927,662 - +0.3 2,927,694 - +2.2 2,927,847 + +0.8 2,927,847 + +0.4 2,927,847 + +1.3 2,927,848 - -2.9 2,927,848 - -3.1 2,927,848 - +0.4 2,927,848 - -2.5 2,927,848 - +1.0 2,927,850 + -1.8 2,927,851 - +1.3 2,927,851 - -0.4 2,927,854 + +0.7 2,927,854 + -0.6 2,927,854 + -3.1 2,927,854 + -1.3 2,927,855 - -1.5 2,927,855 - +1.4 2,927,855 - +0.1 2,927,863 + -1.0 2,927,863 + -1.2 2,927,863 + -1.4 2,927,864 - +0.8 2,927,864 - -0.4 2,927,866 + +1.2 2,927,866 + -2.0 2,927,867 - -1.5 2,927,871 + +0.5 2,927,871 + -0.1 2,927,871 + +0.6 2,927,872 - -0.9 2,927,872 - +0.1 2,927,872 - +0.1 2,927,872 - +0.6 2,927,872 - +0.0
Or see this region's nucleotide sequence