Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2462 and Pf6N2E2_2463 are separated by 120 nucleotides Pf6N2E2_2463 and Pf6N2E2_2464 overlap by 4 nucleotides Pf6N2E2_2464 and Pf6N2E2_2465 are separated by 7 nucleotides Pf6N2E2_2465 and Pf6N2E2_2466 are separated by 110 nucleotides Pf6N2E2_2466 and Pf6N2E2_2467 are separated by 96 nucleotides
Pf6N2E2_2462 - FIG00956413: hypothetical protein, at 2,912,343 to 2,913,476
_2462
Pf6N2E2_2463 - FIG00957049: hypothetical protein, at 2,913,597 to 2,913,983
_2463
Pf6N2E2_2464 - Transcription elongation factor, at 2,913,980 to 2,914,468
_2464
Pf6N2E2_2465 - Cys regulon transcriptional activator CysB, at 2,914,476 to 2,915,450
_2465
Pf6N2E2_2466 - Universal stress protein family, at 2,915,561 to 2,916,061
_2466
Pf6N2E2_2467 - 5'-nucleotidase (EC 3.1.3.5), at 2,916,158 to 2,917,063
_2467
Position (kb)
2914
2915
2916 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2913.515 kb on - strand at 2913.546 kb on + strand at 2913.547 kb on - strand at 2913.547 kb on - strand at 2913.563 kb on + strand at 2914.112 kb on + strand, within Pf6N2E2_2464 at 2914.113 kb on - strand, within Pf6N2E2_2464 at 2914.113 kb on - strand, within Pf6N2E2_2464 at 2914.139 kb on + strand, within Pf6N2E2_2464 at 2914.139 kb on + strand, within Pf6N2E2_2464 at 2914.140 kb on - strand, within Pf6N2E2_2464 at 2914.140 kb on - strand, within Pf6N2E2_2464 at 2914.140 kb on - strand, within Pf6N2E2_2464 at 2914.140 kb on - strand, within Pf6N2E2_2464 at 2914.140 kb on - strand, within Pf6N2E2_2464 at 2914.176 kb on + strand, within Pf6N2E2_2464 at 2914.176 kb on + strand, within Pf6N2E2_2464 at 2914.177 kb on - strand, within Pf6N2E2_2464 at 2914.177 kb on - strand, within Pf6N2E2_2464 at 2914.177 kb on - strand, within Pf6N2E2_2464 at 2914.212 kb on + strand, within Pf6N2E2_2464 at 2914.213 kb on - strand, within Pf6N2E2_2464 at 2914.220 kb on + strand, within Pf6N2E2_2464 at 2914.221 kb on - strand, within Pf6N2E2_2464 at 2914.263 kb on + strand, within Pf6N2E2_2464 at 2914.264 kb on - strand, within Pf6N2E2_2464 at 2914.414 kb on - strand, within Pf6N2E2_2464 at 2914.414 kb on - strand, within Pf6N2E2_2464 at 2914.414 kb on - strand, within Pf6N2E2_2464 at 2914.466 kb on + strand at 2914.467 kb on - strand at 2914.467 kb on - strand at 2914.467 kb on - strand at 2914.467 kb on - strand at 2914.477 kb on + strand at 2914.477 kb on + strand at 2914.477 kb on + strand at 2914.478 kb on - strand at 2914.754 kb on - strand, within Pf6N2E2_2465 at 2914.754 kb on - strand, within Pf6N2E2_2465 at 2914.857 kb on + strand, within Pf6N2E2_2465 at 2914.858 kb on - strand, within Pf6N2E2_2465 at 2914.858 kb on - strand, within Pf6N2E2_2465 at 2914.861 kb on + strand, within Pf6N2E2_2465 at 2914.862 kb on - strand, within Pf6N2E2_2465 at 2914.862 kb on - strand, within Pf6N2E2_2465 at 2914.862 kb on - strand, within Pf6N2E2_2465 at 2914.862 kb on - strand, within Pf6N2E2_2465 at 2914.862 kb on - strand, within Pf6N2E2_2465 at 2914.862 kb on - strand, within Pf6N2E2_2465 at 2914.862 kb on - strand, within Pf6N2E2_2465 at 2914.961 kb on - strand, within Pf6N2E2_2465 at 2915.372 kb on - strand at 2915.372 kb on - strand at 2915.428 kb on + strand at 2915.450 kb on + strand at 2915.450 kb on + strand at 2915.450 kb on + strand at 2915.450 kb on + strand at 2915.450 kb on + strand at 2915.450 kb on + strand at 2915.451 kb on - strand at 2915.451 kb on - strand at 2915.451 kb on - strand at 2915.451 kb on - strand at 2915.451 kb on - strand at 2915.451 kb on - strand at 2915.451 kb on - strand at 2915.451 kb on - strand at 2915.454 kb on + strand at 2915.500 kb on - strand at 2915.500 kb on - strand at 2915.589 kb on - strand at 2915.605 kb on - strand at 2915.621 kb on + strand, within Pf6N2E2_2466 at 2915.622 kb on - strand, within Pf6N2E2_2466 at 2915.631 kb on - strand, within Pf6N2E2_2466 at 2915.690 kb on + strand, within Pf6N2E2_2466 at 2915.758 kb on - strand, within Pf6N2E2_2466 at 2915.758 kb on - strand, within Pf6N2E2_2466 at 2915.758 kb on - strand, within Pf6N2E2_2466 at 2915.905 kb on - strand, within Pf6N2E2_2466 at 2915.905 kb on - strand, within Pf6N2E2_2466 at 2915.946 kb on - strand, within Pf6N2E2_2466 at 2915.946 kb on - strand, within Pf6N2E2_2466 at 2915.946 kb on - strand, within Pf6N2E2_2466 at 2915.961 kb on + strand, within Pf6N2E2_2466 at 2915.961 kb on + strand, within Pf6N2E2_2466 at 2915.961 kb on + strand, within Pf6N2E2_2466 at 2915.961 kb on + strand, within Pf6N2E2_2466 at 2915.961 kb on + strand, within Pf6N2E2_2466 at 2915.962 kb on - strand, within Pf6N2E2_2466 at 2915.962 kb on - strand, within Pf6N2E2_2466 at 2915.962 kb on - strand, within Pf6N2E2_2466 at 2915.962 kb on - strand, within Pf6N2E2_2466 at 2915.962 kb on - strand, within Pf6N2E2_2466 at 2915.962 kb on - strand, within Pf6N2E2_2466 at 2915.962 kb on - strand, within Pf6N2E2_2466 at 2915.962 kb on - strand, within Pf6N2E2_2466 at 2915.962 kb on - strand, within Pf6N2E2_2466 at 2915.962 kb on - strand at 2915.962 kb on - strand, within Pf6N2E2_2466 at 2915.962 kb on - strand, within Pf6N2E2_2466 at 2915.962 kb on - strand, within Pf6N2E2_2466 at 2915.962 kb on - strand, within Pf6N2E2_2466 at 2915.962 kb on - strand, within Pf6N2E2_2466 at 2915.962 kb on - strand, within Pf6N2E2_2466 at 2916.012 kb on + strand at 2916.012 kb on + strand at 2916.013 kb on - strand at 2916.013 kb on - strand at 2916.013 kb on - strand at 2916.021 kb on + strand at 2916.021 kb on + strand at 2916.042 kb on + strand at 2916.042 kb on + strand at 2916.042 kb on + strand at 2916.043 kb on - strand at 2916.043 kb on - strand at 2916.104 kb on + strand at 2916.104 kb on + strand at 2916.104 kb on + strand at 2916.104 kb on + strand at 2916.104 kb on + strand at 2916.105 kb on - strand at 2916.105 kb on - strand at 2916.105 kb on - strand at 2916.328 kb on + strand, within Pf6N2E2_2467 at 2916.329 kb on - strand, within Pf6N2E2_2467 at 2916.398 kb on - strand, within Pf6N2E2_2467
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 2,913,515 - +2.0 2,913,546 + +0.8 2,913,547 - +0.9 2,913,547 - +0.6 2,913,563 + +0.2 2,914,112 + Pf6N2E2_2464 0.27 -0.4 2,914,113 - Pf6N2E2_2464 0.27 +1.2 2,914,113 - Pf6N2E2_2464 0.27 -2.0 2,914,139 + Pf6N2E2_2464 0.33 -1.2 2,914,139 + Pf6N2E2_2464 0.33 +0.1 2,914,140 - Pf6N2E2_2464 0.33 +0.2 2,914,140 - Pf6N2E2_2464 0.33 +0.9 2,914,140 - Pf6N2E2_2464 0.33 -2.2 2,914,140 - Pf6N2E2_2464 0.33 +0.5 2,914,140 - Pf6N2E2_2464 0.33 +0.7 2,914,176 + Pf6N2E2_2464 0.40 +1.3 2,914,176 + Pf6N2E2_2464 0.40 +1.2 2,914,177 - Pf6N2E2_2464 0.40 -1.6 2,914,177 - Pf6N2E2_2464 0.40 +1.5 2,914,177 - Pf6N2E2_2464 0.40 -0.1 2,914,212 + Pf6N2E2_2464 0.47 -1.6 2,914,213 - Pf6N2E2_2464 0.48 -0.2 2,914,220 + Pf6N2E2_2464 0.49 -2.8 2,914,221 - Pf6N2E2_2464 0.49 +0.6 2,914,263 + Pf6N2E2_2464 0.58 +0.2 2,914,264 - Pf6N2E2_2464 0.58 +0.1 2,914,414 - Pf6N2E2_2464 0.89 +1.2 2,914,414 - Pf6N2E2_2464 0.89 -1.6 2,914,414 - Pf6N2E2_2464 0.89 +0.3 2,914,466 + +1.6 2,914,467 - +1.3 2,914,467 - -1.6 2,914,467 - +0.2 2,914,467 - -0.2 2,914,477 + -1.8 2,914,477 + +0.4 2,914,477 + +1.0 2,914,478 - +0.8 2,914,754 - Pf6N2E2_2465 0.29 -3.5 2,914,754 - Pf6N2E2_2465 0.29 -3.3 2,914,857 + Pf6N2E2_2465 0.39 -1.8 2,914,858 - Pf6N2E2_2465 0.39 +0.1 2,914,858 - Pf6N2E2_2465 0.39 -2.1 2,914,861 + Pf6N2E2_2465 0.39 -0.8 2,914,862 - Pf6N2E2_2465 0.40 -2.1 2,914,862 - Pf6N2E2_2465 0.40 -0.8 2,914,862 - Pf6N2E2_2465 0.40 -1.3 2,914,862 - Pf6N2E2_2465 0.40 -1.6 2,914,862 - Pf6N2E2_2465 0.40 -2.9 2,914,862 - Pf6N2E2_2465 0.40 -3.3 2,914,862 - Pf6N2E2_2465 0.40 +0.3 2,914,961 - Pf6N2E2_2465 0.50 -0.7 2,915,372 - -1.7 2,915,372 - +0.8 2,915,428 + -1.3 2,915,450 + -2.4 2,915,450 + -2.8 2,915,450 + -2.6 2,915,450 + -1.0 2,915,450 + -1.8 2,915,450 + -3.6 2,915,451 - -2.9 2,915,451 - -2.7 2,915,451 - -1.9 2,915,451 - -3.0 2,915,451 - -0.8 2,915,451 - -2.0 2,915,451 - -0.5 2,915,451 - -1.6 2,915,454 + -3.7 2,915,500 - +1.2 2,915,500 - -0.8 2,915,589 - -2.2 2,915,605 - -0.2 2,915,621 + Pf6N2E2_2466 0.12 -0.8 2,915,622 - Pf6N2E2_2466 0.12 -3.2 2,915,631 - Pf6N2E2_2466 0.14 -0.6 2,915,690 + Pf6N2E2_2466 0.26 +0.2 2,915,758 - Pf6N2E2_2466 0.39 -0.1 2,915,758 - Pf6N2E2_2466 0.39 -0.5 2,915,758 - Pf6N2E2_2466 0.39 +2.0 2,915,905 - Pf6N2E2_2466 0.69 -0.5 2,915,905 - Pf6N2E2_2466 0.69 +1.5 2,915,946 - Pf6N2E2_2466 0.77 +0.7 2,915,946 - Pf6N2E2_2466 0.77 +0.5 2,915,946 - Pf6N2E2_2466 0.77 -1.7 2,915,961 + Pf6N2E2_2466 0.80 -0.7 2,915,961 + Pf6N2E2_2466 0.80 -0.2 2,915,961 + Pf6N2E2_2466 0.80 -0.3 2,915,961 + Pf6N2E2_2466 0.80 -2.4 2,915,961 + Pf6N2E2_2466 0.80 +0.3 2,915,962 - Pf6N2E2_2466 0.80 -0.1 2,915,962 - Pf6N2E2_2466 0.80 +0.6 2,915,962 - Pf6N2E2_2466 0.80 +0.3 2,915,962 - Pf6N2E2_2466 0.80 -0.6 2,915,962 - Pf6N2E2_2466 0.80 +0.9 2,915,962 - Pf6N2E2_2466 0.80 +3.4 2,915,962 - Pf6N2E2_2466 0.80 -0.9 2,915,962 - Pf6N2E2_2466 0.80 -0.4 2,915,962 - Pf6N2E2_2466 0.80 +0.8 2,915,962 - +0.2 2,915,962 - Pf6N2E2_2466 0.80 +0.1 2,915,962 - Pf6N2E2_2466 0.80 -0.1 2,915,962 - Pf6N2E2_2466 0.80 -1.2 2,915,962 - Pf6N2E2_2466 0.80 +1.0 2,915,962 - Pf6N2E2_2466 0.80 +0.9 2,915,962 - Pf6N2E2_2466 0.80 -1.8 2,916,012 + -0.5 2,916,012 + +0.9 2,916,013 - -2.8 2,916,013 - +0.6 2,916,013 - +0.2 2,916,021 + +0.4 2,916,021 + -2.4 2,916,042 + -0.9 2,916,042 + -0.5 2,916,042 + -0.3 2,916,043 - -0.7 2,916,043 - +1.2 2,916,104 + +1.4 2,916,104 + -0.0 2,916,104 + -0.7 2,916,104 + +0.7 2,916,104 + +0.0 2,916,105 - +0.4 2,916,105 - +1.2 2,916,105 - +0.0 2,916,328 + Pf6N2E2_2467 0.19 +0.2 2,916,329 - Pf6N2E2_2467 0.19 +1.9 2,916,398 - Pf6N2E2_2467 0.26 +0.8
Or see this region's nucleotide sequence