Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2465

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2462 and Pf6N2E2_2463 are separated by 120 nucleotidesPf6N2E2_2463 and Pf6N2E2_2464 overlap by 4 nucleotidesPf6N2E2_2464 and Pf6N2E2_2465 are separated by 7 nucleotidesPf6N2E2_2465 and Pf6N2E2_2466 are separated by 110 nucleotidesPf6N2E2_2466 and Pf6N2E2_2467 are separated by 96 nucleotides Pf6N2E2_2462 - FIG00956413: hypothetical protein, at 2,912,343 to 2,913,476 _2462 Pf6N2E2_2463 - FIG00957049: hypothetical protein, at 2,913,597 to 2,913,983 _2463 Pf6N2E2_2464 - Transcription elongation factor, at 2,913,980 to 2,914,468 _2464 Pf6N2E2_2465 - Cys regulon transcriptional activator CysB, at 2,914,476 to 2,915,450 _2465 Pf6N2E2_2466 - Universal stress protein family, at 2,915,561 to 2,916,061 _2466 Pf6N2E2_2467 - 5'-nucleotidase (EC 3.1.3.5), at 2,916,158 to 2,917,063 _2467 Position (kb) 2914 2915 2916Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2913.515 kb on - strandat 2913.546 kb on + strandat 2913.547 kb on - strandat 2913.547 kb on - strandat 2913.563 kb on + strandat 2914.112 kb on + strand, within Pf6N2E2_2464at 2914.113 kb on - strand, within Pf6N2E2_2464at 2914.113 kb on - strand, within Pf6N2E2_2464at 2914.139 kb on + strand, within Pf6N2E2_2464at 2914.139 kb on + strand, within Pf6N2E2_2464at 2914.140 kb on - strand, within Pf6N2E2_2464at 2914.140 kb on - strand, within Pf6N2E2_2464at 2914.140 kb on - strand, within Pf6N2E2_2464at 2914.140 kb on - strand, within Pf6N2E2_2464at 2914.140 kb on - strand, within Pf6N2E2_2464at 2914.176 kb on + strand, within Pf6N2E2_2464at 2914.176 kb on + strand, within Pf6N2E2_2464at 2914.177 kb on - strand, within Pf6N2E2_2464at 2914.177 kb on - strand, within Pf6N2E2_2464at 2914.177 kb on - strand, within Pf6N2E2_2464at 2914.212 kb on + strand, within Pf6N2E2_2464at 2914.213 kb on - strand, within Pf6N2E2_2464at 2914.220 kb on + strand, within Pf6N2E2_2464at 2914.221 kb on - strand, within Pf6N2E2_2464at 2914.263 kb on + strand, within Pf6N2E2_2464at 2914.264 kb on - strand, within Pf6N2E2_2464at 2914.414 kb on - strand, within Pf6N2E2_2464at 2914.414 kb on - strand, within Pf6N2E2_2464at 2914.414 kb on - strand, within Pf6N2E2_2464at 2914.466 kb on + strandat 2914.467 kb on - strandat 2914.467 kb on - strandat 2914.467 kb on - strandat 2914.467 kb on - strandat 2914.477 kb on + strandat 2914.477 kb on + strandat 2914.477 kb on + strandat 2914.478 kb on - strandat 2914.754 kb on - strand, within Pf6N2E2_2465at 2914.754 kb on - strand, within Pf6N2E2_2465at 2914.857 kb on + strand, within Pf6N2E2_2465at 2914.858 kb on - strand, within Pf6N2E2_2465at 2914.858 kb on - strand, within Pf6N2E2_2465at 2914.861 kb on + strand, within Pf6N2E2_2465at 2914.862 kb on - strand, within Pf6N2E2_2465at 2914.862 kb on - strand, within Pf6N2E2_2465at 2914.862 kb on - strand, within Pf6N2E2_2465at 2914.862 kb on - strand, within Pf6N2E2_2465at 2914.862 kb on - strand, within Pf6N2E2_2465at 2914.862 kb on - strand, within Pf6N2E2_2465at 2914.862 kb on - strand, within Pf6N2E2_2465at 2914.961 kb on - strand, within Pf6N2E2_2465at 2915.372 kb on - strandat 2915.372 kb on - strandat 2915.428 kb on + strandat 2915.450 kb on + strandat 2915.450 kb on + strandat 2915.450 kb on + strandat 2915.450 kb on + strandat 2915.450 kb on + strandat 2915.450 kb on + strandat 2915.451 kb on - strandat 2915.451 kb on - strandat 2915.451 kb on - strandat 2915.451 kb on - strandat 2915.451 kb on - strandat 2915.451 kb on - strandat 2915.451 kb on - strandat 2915.451 kb on - strandat 2915.454 kb on + strandat 2915.500 kb on - strandat 2915.500 kb on - strandat 2915.589 kb on - strandat 2915.605 kb on - strandat 2915.621 kb on + strand, within Pf6N2E2_2466at 2915.622 kb on - strand, within Pf6N2E2_2466at 2915.631 kb on - strand, within Pf6N2E2_2466at 2915.690 kb on + strand, within Pf6N2E2_2466at 2915.758 kb on - strand, within Pf6N2E2_2466at 2915.758 kb on - strand, within Pf6N2E2_2466at 2915.758 kb on - strand, within Pf6N2E2_2466at 2915.905 kb on - strand, within Pf6N2E2_2466at 2915.905 kb on - strand, within Pf6N2E2_2466at 2915.946 kb on - strand, within Pf6N2E2_2466at 2915.946 kb on - strand, within Pf6N2E2_2466at 2915.946 kb on - strand, within Pf6N2E2_2466at 2915.961 kb on + strand, within Pf6N2E2_2466at 2915.961 kb on + strand, within Pf6N2E2_2466at 2915.961 kb on + strand, within Pf6N2E2_2466at 2915.961 kb on + strand, within Pf6N2E2_2466at 2915.961 kb on + strand, within Pf6N2E2_2466at 2915.962 kb on - strand, within Pf6N2E2_2466at 2915.962 kb on - strand, within Pf6N2E2_2466at 2915.962 kb on - strand, within Pf6N2E2_2466at 2915.962 kb on - strand, within Pf6N2E2_2466at 2915.962 kb on - strand, within Pf6N2E2_2466at 2915.962 kb on - strand, within Pf6N2E2_2466at 2915.962 kb on - strand, within Pf6N2E2_2466at 2915.962 kb on - strand, within Pf6N2E2_2466at 2915.962 kb on - strand, within Pf6N2E2_2466at 2915.962 kb on - strandat 2915.962 kb on - strand, within Pf6N2E2_2466at 2915.962 kb on - strand, within Pf6N2E2_2466at 2915.962 kb on - strand, within Pf6N2E2_2466at 2915.962 kb on - strand, within Pf6N2E2_2466at 2915.962 kb on - strand, within Pf6N2E2_2466at 2915.962 kb on - strand, within Pf6N2E2_2466at 2916.012 kb on + strandat 2916.012 kb on + strandat 2916.013 kb on - strandat 2916.013 kb on - strandat 2916.013 kb on - strandat 2916.021 kb on + strandat 2916.021 kb on + strandat 2916.042 kb on + strandat 2916.042 kb on + strandat 2916.042 kb on + strandat 2916.043 kb on - strandat 2916.043 kb on - strandat 2916.104 kb on + strandat 2916.104 kb on + strandat 2916.104 kb on + strandat 2916.104 kb on + strandat 2916.104 kb on + strandat 2916.105 kb on - strandat 2916.105 kb on - strandat 2916.105 kb on - strandat 2916.328 kb on + strand, within Pf6N2E2_2467at 2916.329 kb on - strand, within Pf6N2E2_2467at 2916.398 kb on - strand, within Pf6N2E2_2467

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,913,515 - +2.0
2,913,546 + +0.8
2,913,547 - +0.9
2,913,547 - +0.6
2,913,563 + +0.2
2,914,112 + Pf6N2E2_2464 0.27 -0.4
2,914,113 - Pf6N2E2_2464 0.27 +1.2
2,914,113 - Pf6N2E2_2464 0.27 -2.0
2,914,139 + Pf6N2E2_2464 0.33 -1.2
2,914,139 + Pf6N2E2_2464 0.33 +0.1
2,914,140 - Pf6N2E2_2464 0.33 +0.2
2,914,140 - Pf6N2E2_2464 0.33 +0.9
2,914,140 - Pf6N2E2_2464 0.33 -2.2
2,914,140 - Pf6N2E2_2464 0.33 +0.5
2,914,140 - Pf6N2E2_2464 0.33 +0.7
2,914,176 + Pf6N2E2_2464 0.40 +1.3
2,914,176 + Pf6N2E2_2464 0.40 +1.2
2,914,177 - Pf6N2E2_2464 0.40 -1.6
2,914,177 - Pf6N2E2_2464 0.40 +1.5
2,914,177 - Pf6N2E2_2464 0.40 -0.1
2,914,212 + Pf6N2E2_2464 0.47 -1.6
2,914,213 - Pf6N2E2_2464 0.48 -0.2
2,914,220 + Pf6N2E2_2464 0.49 -2.8
2,914,221 - Pf6N2E2_2464 0.49 +0.6
2,914,263 + Pf6N2E2_2464 0.58 +0.2
2,914,264 - Pf6N2E2_2464 0.58 +0.1
2,914,414 - Pf6N2E2_2464 0.89 +1.2
2,914,414 - Pf6N2E2_2464 0.89 -1.6
2,914,414 - Pf6N2E2_2464 0.89 +0.3
2,914,466 + +1.6
2,914,467 - +1.3
2,914,467 - -1.6
2,914,467 - +0.2
2,914,467 - -0.2
2,914,477 + -1.8
2,914,477 + +0.4
2,914,477 + +1.0
2,914,478 - +0.8
2,914,754 - Pf6N2E2_2465 0.29 -3.5
2,914,754 - Pf6N2E2_2465 0.29 -3.3
2,914,857 + Pf6N2E2_2465 0.39 -1.8
2,914,858 - Pf6N2E2_2465 0.39 +0.1
2,914,858 - Pf6N2E2_2465 0.39 -2.1
2,914,861 + Pf6N2E2_2465 0.39 -0.8
2,914,862 - Pf6N2E2_2465 0.40 -2.1
2,914,862 - Pf6N2E2_2465 0.40 -0.8
2,914,862 - Pf6N2E2_2465 0.40 -1.3
2,914,862 - Pf6N2E2_2465 0.40 -1.6
2,914,862 - Pf6N2E2_2465 0.40 -2.9
2,914,862 - Pf6N2E2_2465 0.40 -3.3
2,914,862 - Pf6N2E2_2465 0.40 +0.3
2,914,961 - Pf6N2E2_2465 0.50 -0.7
2,915,372 - -1.7
2,915,372 - +0.8
2,915,428 + -1.3
2,915,450 + -2.4
2,915,450 + -2.8
2,915,450 + -2.6
2,915,450 + -1.0
2,915,450 + -1.8
2,915,450 + -3.6
2,915,451 - -2.9
2,915,451 - -2.7
2,915,451 - -1.9
2,915,451 - -3.0
2,915,451 - -0.8
2,915,451 - -2.0
2,915,451 - -0.5
2,915,451 - -1.6
2,915,454 + -3.7
2,915,500 - +1.2
2,915,500 - -0.8
2,915,589 - -2.2
2,915,605 - -0.2
2,915,621 + Pf6N2E2_2466 0.12 -0.8
2,915,622 - Pf6N2E2_2466 0.12 -3.2
2,915,631 - Pf6N2E2_2466 0.14 -0.6
2,915,690 + Pf6N2E2_2466 0.26 +0.2
2,915,758 - Pf6N2E2_2466 0.39 -0.1
2,915,758 - Pf6N2E2_2466 0.39 -0.5
2,915,758 - Pf6N2E2_2466 0.39 +2.0
2,915,905 - Pf6N2E2_2466 0.69 -0.5
2,915,905 - Pf6N2E2_2466 0.69 +1.5
2,915,946 - Pf6N2E2_2466 0.77 +0.7
2,915,946 - Pf6N2E2_2466 0.77 +0.5
2,915,946 - Pf6N2E2_2466 0.77 -1.7
2,915,961 + Pf6N2E2_2466 0.80 -0.7
2,915,961 + Pf6N2E2_2466 0.80 -0.2
2,915,961 + Pf6N2E2_2466 0.80 -0.3
2,915,961 + Pf6N2E2_2466 0.80 -2.4
2,915,961 + Pf6N2E2_2466 0.80 +0.3
2,915,962 - Pf6N2E2_2466 0.80 -0.1
2,915,962 - Pf6N2E2_2466 0.80 +0.6
2,915,962 - Pf6N2E2_2466 0.80 +0.3
2,915,962 - Pf6N2E2_2466 0.80 -0.6
2,915,962 - Pf6N2E2_2466 0.80 +0.9
2,915,962 - Pf6N2E2_2466 0.80 +3.4
2,915,962 - Pf6N2E2_2466 0.80 -0.9
2,915,962 - Pf6N2E2_2466 0.80 -0.4
2,915,962 - Pf6N2E2_2466 0.80 +0.8
2,915,962 - +0.2
2,915,962 - Pf6N2E2_2466 0.80 +0.1
2,915,962 - Pf6N2E2_2466 0.80 -0.1
2,915,962 - Pf6N2E2_2466 0.80 -1.2
2,915,962 - Pf6N2E2_2466 0.80 +1.0
2,915,962 - Pf6N2E2_2466 0.80 +0.9
2,915,962 - Pf6N2E2_2466 0.80 -1.8
2,916,012 + -0.5
2,916,012 + +0.9
2,916,013 - -2.8
2,916,013 - +0.6
2,916,013 - +0.2
2,916,021 + +0.4
2,916,021 + -2.4
2,916,042 + -0.9
2,916,042 + -0.5
2,916,042 + -0.3
2,916,043 - -0.7
2,916,043 - +1.2
2,916,104 + +1.4
2,916,104 + -0.0
2,916,104 + -0.7
2,916,104 + +0.7
2,916,104 + +0.0
2,916,105 - +0.4
2,916,105 - +1.2
2,916,105 - +0.0
2,916,328 + Pf6N2E2_2467 0.19 +0.2
2,916,329 - Pf6N2E2_2467 0.19 +1.9
2,916,398 - Pf6N2E2_2467 0.26 +0.8

Or see this region's nucleotide sequence