Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2367

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2365 and Pf6N2E2_2366 overlap by 8 nucleotidesPf6N2E2_2366 and Pf6N2E2_2367 are separated by 541 nucleotidesPf6N2E2_2367 and Pf6N2E2_2368 overlap by 4 nucleotidesPf6N2E2_2368 and Pf6N2E2_2369 overlap by 17 nucleotides Pf6N2E2_2365 - Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components), at 2,799,421 to 2,800,080 _2365 Pf6N2E2_2366 - Type III secretion inner membrane protein (YscQ,homologous to flagellar export components), at 2,800,073 to 2,800,453 _2366 Pf6N2E2_2367 - hypothetical protein, at 2,800,995 to 2,801,870 _2367 Pf6N2E2_2368 - Surface presentation of antigens protein SpaM, at 2,801,867 to 2,802,322 _2368 Pf6N2E2_2369 - Flagellum-specific ATP synthase FliI, at 2,802,306 to 2,803,556 _2369 Position (kb) 2800 2801 2802Strain fitness (log2 ratio) -3 -2 -1 0 1at 2800.004 kb on + strand, within Pf6N2E2_2365at 2800.005 kb on - strand, within Pf6N2E2_2365at 2800.370 kb on + strand, within Pf6N2E2_2366at 2800.371 kb on - strand, within Pf6N2E2_2366at 2800.371 kb on - strand, within Pf6N2E2_2366at 2800.371 kb on - strand, within Pf6N2E2_2366at 2800.371 kb on - strand, within Pf6N2E2_2366at 2800.384 kb on + strand, within Pf6N2E2_2366at 2800.385 kb on - strand, within Pf6N2E2_2366at 2800.878 kb on - strandat 2801.664 kb on - strand, within Pf6N2E2_2367at 2801.664 kb on - strand, within Pf6N2E2_2367at 2802.616 kb on + strand, within Pf6N2E2_2369at 2802.617 kb on - strand, within Pf6N2E2_2369at 2802.694 kb on + strand, within Pf6N2E2_2369at 2802.695 kb on - strand, within Pf6N2E2_2369

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,800,004 + Pf6N2E2_2365 0.88 -3.5
2,800,005 - Pf6N2E2_2365 0.88 -0.1
2,800,370 + Pf6N2E2_2366 0.78 +1.0
2,800,371 - Pf6N2E2_2366 0.78 -1.4
2,800,371 - Pf6N2E2_2366 0.78 +1.3
2,800,371 - Pf6N2E2_2366 0.78 -1.3
2,800,371 - Pf6N2E2_2366 0.78 +1.5
2,800,384 + Pf6N2E2_2366 0.82 -0.0
2,800,385 - Pf6N2E2_2366 0.82 +0.5
2,800,878 - +0.9
2,801,664 - Pf6N2E2_2367 0.76 -0.7
2,801,664 - Pf6N2E2_2367 0.76 -1.5
2,802,616 + Pf6N2E2_2369 0.25 +1.4
2,802,617 - Pf6N2E2_2369 0.25 -0.5
2,802,694 + Pf6N2E2_2369 0.31 +0.8
2,802,695 - Pf6N2E2_2369 0.31 +0.2

Or see this region's nucleotide sequence