Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2274

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2272 and Pf6N2E2_2273 overlap by 4 nucleotidesPf6N2E2_2273 and Pf6N2E2_2274 are separated by 42 nucleotidesPf6N2E2_2274 and Pf6N2E2_2275 are separated by 346 nucleotides Pf6N2E2_2272 - FIG00953243: hypothetical protein, at 2,686,479 to 2,687,075 _2272 Pf6N2E2_2273 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 2,687,072 to 2,687,794 _2273 Pf6N2E2_2274 - Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1), at 2,687,837 to 2,689,231 _2274 Pf6N2E2_2275 - Thiamin biosynthesis lipoprotein ApbE, at 2,689,578 to 2,690,567 _2275 Position (kb) 2687 2688 2689 2690Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2687.055 kb on - strandat 2687.060 kb on + strandat 2687.061 kb on - strandat 2687.061 kb on - strandat 2687.084 kb on + strandat 2687.084 kb on + strandat 2687.084 kb on + strandat 2687.084 kb on + strandat 2687.084 kb on + strandat 2687.085 kb on - strandat 2687.160 kb on + strand, within Pf6N2E2_2273at 2687.161 kb on - strand, within Pf6N2E2_2273at 2687.291 kb on + strand, within Pf6N2E2_2273at 2687.291 kb on + strand, within Pf6N2E2_2273at 2687.291 kb on + strand, within Pf6N2E2_2273at 2687.291 kb on + strand, within Pf6N2E2_2273at 2687.292 kb on - strand, within Pf6N2E2_2273at 2687.292 kb on - strand, within Pf6N2E2_2273at 2687.292 kb on - strand, within Pf6N2E2_2273at 2687.292 kb on - strand, within Pf6N2E2_2273at 2687.597 kb on + strand, within Pf6N2E2_2273at 2687.598 kb on - strand, within Pf6N2E2_2273at 2687.749 kb on + strandat 2687.749 kb on + strandat 2687.862 kb on + strandat 2687.863 kb on - strandat 2688.018 kb on - strand, within Pf6N2E2_2274at 2688.186 kb on + strand, within Pf6N2E2_2274at 2688.187 kb on - strand, within Pf6N2E2_2274at 2688.187 kb on - strand, within Pf6N2E2_2274at 2688.238 kb on + strand, within Pf6N2E2_2274at 2688.239 kb on - strand, within Pf6N2E2_2274at 2688.315 kb on + strand, within Pf6N2E2_2274at 2688.316 kb on - strand, within Pf6N2E2_2274at 2688.316 kb on - strand, within Pf6N2E2_2274at 2688.316 kb on - strand, within Pf6N2E2_2274at 2688.327 kb on - strand, within Pf6N2E2_2274at 2688.335 kb on - strand, within Pf6N2E2_2274at 2688.335 kb on - strand, within Pf6N2E2_2274at 2689.216 kb on - strandat 2689.221 kb on + strandat 2689.235 kb on + strandat 2689.235 kb on + strandat 2689.236 kb on - strandat 2689.344 kb on + strandat 2689.344 kb on + strandat 2689.344 kb on + strandat 2689.345 kb on - strandat 2689.345 kb on - strandat 2689.345 kb on - strandat 2689.345 kb on - strandat 2689.345 kb on - strandat 2689.345 kb on - strandat 2689.347 kb on - strandat 2689.347 kb on - strandat 2689.347 kb on - strandat 2689.347 kb on - strandat 2689.347 kb on - strandat 2689.347 kb on - strandat 2689.389 kb on - strandat 2689.408 kb on + strandat 2689.422 kb on + strandat 2689.423 kb on - strandat 2689.560 kb on - strandat 2689.560 kb on - strandat 2689.560 kb on - strandat 2689.687 kb on + strand, within Pf6N2E2_2275at 2689.688 kb on - strand, within Pf6N2E2_2275at 2689.788 kb on + strand, within Pf6N2E2_2275at 2689.788 kb on + strand, within Pf6N2E2_2275at 2689.788 kb on + strand, within Pf6N2E2_2275at 2689.789 kb on - strand, within Pf6N2E2_2275at 2689.789 kb on - strand, within Pf6N2E2_2275at 2689.852 kb on + strand, within Pf6N2E2_2275at 2689.853 kb on - strand, within Pf6N2E2_2275at 2689.856 kb on + strand, within Pf6N2E2_2275at 2689.856 kb on + strand, within Pf6N2E2_2275at 2689.856 kb on + strand, within Pf6N2E2_2275at 2689.857 kb on - strand, within Pf6N2E2_2275at 2690.014 kb on + strand, within Pf6N2E2_2275at 2690.014 kb on + strand, within Pf6N2E2_2275at 2690.015 kb on - strand, within Pf6N2E2_2275at 2690.015 kb on - strand, within Pf6N2E2_2275at 2690.191 kb on - strand, within Pf6N2E2_2275

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,687,055 - +0.7
2,687,060 + +0.1
2,687,061 - +1.2
2,687,061 - -0.0
2,687,084 + +1.3
2,687,084 + +0.0
2,687,084 + +0.7
2,687,084 + +1.8
2,687,084 + -0.9
2,687,085 - +1.6
2,687,160 + Pf6N2E2_2273 0.12 +0.3
2,687,161 - Pf6N2E2_2273 0.12 -2.1
2,687,291 + Pf6N2E2_2273 0.30 -0.2
2,687,291 + Pf6N2E2_2273 0.30 +0.5
2,687,291 + Pf6N2E2_2273 0.30 -2.0
2,687,291 + Pf6N2E2_2273 0.30 +0.6
2,687,292 - Pf6N2E2_2273 0.30 -0.2
2,687,292 - Pf6N2E2_2273 0.30 +0.7
2,687,292 - Pf6N2E2_2273 0.30 -1.6
2,687,292 - Pf6N2E2_2273 0.30 +0.4
2,687,597 + Pf6N2E2_2273 0.73 +0.1
2,687,598 - Pf6N2E2_2273 0.73 +1.0
2,687,749 + +1.0
2,687,749 + +0.1
2,687,862 + -2.5
2,687,863 - -3.0
2,688,018 - Pf6N2E2_2274 0.13 +0.2
2,688,186 + Pf6N2E2_2274 0.25 +0.2
2,688,187 - Pf6N2E2_2274 0.25 -2.9
2,688,187 - Pf6N2E2_2274 0.25 -1.5
2,688,238 + Pf6N2E2_2274 0.29 -0.1
2,688,239 - Pf6N2E2_2274 0.29 -3.7
2,688,315 + Pf6N2E2_2274 0.34 +0.4
2,688,316 - Pf6N2E2_2274 0.34 -3.0
2,688,316 - Pf6N2E2_2274 0.34 -4.4
2,688,316 - Pf6N2E2_2274 0.34 -2.1
2,688,327 - Pf6N2E2_2274 0.35 +0.9
2,688,335 - Pf6N2E2_2274 0.36 -3.2
2,688,335 - Pf6N2E2_2274 0.36 -0.9
2,689,216 - -3.7
2,689,221 + -1.9
2,689,235 + -0.6
2,689,235 + +0.0
2,689,236 - +0.0
2,689,344 + -1.3
2,689,344 + -1.3
2,689,344 + +1.1
2,689,345 - +0.3
2,689,345 - +0.4
2,689,345 - -0.2
2,689,345 - +0.1
2,689,345 - -0.2
2,689,345 - +0.0
2,689,347 - +0.6
2,689,347 - +0.5
2,689,347 - -1.0
2,689,347 - +0.8
2,689,347 - +0.9
2,689,347 - +1.1
2,689,389 - +1.0
2,689,408 + +0.0
2,689,422 + -1.6
2,689,423 - +1.9
2,689,560 - +0.3
2,689,560 - -1.6
2,689,560 - -0.8
2,689,687 + Pf6N2E2_2275 0.11 -0.7
2,689,688 - Pf6N2E2_2275 0.11 -1.8
2,689,788 + Pf6N2E2_2275 0.21 -1.0
2,689,788 + Pf6N2E2_2275 0.21 +1.2
2,689,788 + Pf6N2E2_2275 0.21 -0.5
2,689,789 - Pf6N2E2_2275 0.21 +1.4
2,689,789 - Pf6N2E2_2275 0.21 -2.3
2,689,852 + Pf6N2E2_2275 0.28 -3.0
2,689,853 - Pf6N2E2_2275 0.28 +0.7
2,689,856 + Pf6N2E2_2275 0.28 +1.7
2,689,856 + Pf6N2E2_2275 0.28 -1.3
2,689,856 + Pf6N2E2_2275 0.28 +0.8
2,689,857 - Pf6N2E2_2275 0.28 -0.4
2,690,014 + Pf6N2E2_2275 0.44 -0.0
2,690,014 + Pf6N2E2_2275 0.44 +1.0
2,690,015 - Pf6N2E2_2275 0.44 -0.4
2,690,015 - Pf6N2E2_2275 0.44 -0.2
2,690,191 - Pf6N2E2_2275 0.62 -0.3

Or see this region's nucleotide sequence