Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2272 and Pf6N2E2_2273 overlap by 4 nucleotides Pf6N2E2_2273 and Pf6N2E2_2274 are separated by 42 nucleotides Pf6N2E2_2274 and Pf6N2E2_2275 are separated by 346 nucleotides
Pf6N2E2_2272 - FIG00953243: hypothetical protein, at 2,686,479 to 2,687,075
_2272
Pf6N2E2_2273 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 2,687,072 to 2,687,794
_2273
Pf6N2E2_2274 - Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1), at 2,687,837 to 2,689,231
_2274
Pf6N2E2_2275 - Thiamin biosynthesis lipoprotein ApbE, at 2,689,578 to 2,690,567
_2275
Position (kb)
2687
2688
2689
2690 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2687.055 kb on - strand at 2687.060 kb on + strand at 2687.061 kb on - strand at 2687.061 kb on - strand at 2687.084 kb on + strand at 2687.084 kb on + strand at 2687.084 kb on + strand at 2687.084 kb on + strand at 2687.084 kb on + strand at 2687.085 kb on - strand at 2687.160 kb on + strand, within Pf6N2E2_2273 at 2687.161 kb on - strand, within Pf6N2E2_2273 at 2687.291 kb on + strand, within Pf6N2E2_2273 at 2687.291 kb on + strand, within Pf6N2E2_2273 at 2687.291 kb on + strand, within Pf6N2E2_2273 at 2687.291 kb on + strand, within Pf6N2E2_2273 at 2687.292 kb on - strand, within Pf6N2E2_2273 at 2687.292 kb on - strand, within Pf6N2E2_2273 at 2687.292 kb on - strand, within Pf6N2E2_2273 at 2687.292 kb on - strand, within Pf6N2E2_2273 at 2687.597 kb on + strand, within Pf6N2E2_2273 at 2687.598 kb on - strand, within Pf6N2E2_2273 at 2687.749 kb on + strand at 2687.749 kb on + strand at 2687.862 kb on + strand at 2687.863 kb on - strand at 2688.018 kb on - strand, within Pf6N2E2_2274 at 2688.186 kb on + strand, within Pf6N2E2_2274 at 2688.187 kb on - strand, within Pf6N2E2_2274 at 2688.187 kb on - strand, within Pf6N2E2_2274 at 2688.238 kb on + strand, within Pf6N2E2_2274 at 2688.239 kb on - strand, within Pf6N2E2_2274 at 2688.315 kb on + strand, within Pf6N2E2_2274 at 2688.316 kb on - strand, within Pf6N2E2_2274 at 2688.316 kb on - strand, within Pf6N2E2_2274 at 2688.316 kb on - strand, within Pf6N2E2_2274 at 2688.327 kb on - strand, within Pf6N2E2_2274 at 2688.335 kb on - strand, within Pf6N2E2_2274 at 2688.335 kb on - strand, within Pf6N2E2_2274 at 2689.216 kb on - strand at 2689.221 kb on + strand at 2689.235 kb on + strand at 2689.235 kb on + strand at 2689.236 kb on - strand at 2689.344 kb on + strand at 2689.344 kb on + strand at 2689.344 kb on + strand at 2689.345 kb on - strand at 2689.345 kb on - strand at 2689.345 kb on - strand at 2689.345 kb on - strand at 2689.345 kb on - strand at 2689.345 kb on - strand at 2689.347 kb on - strand at 2689.347 kb on - strand at 2689.347 kb on - strand at 2689.347 kb on - strand at 2689.347 kb on - strand at 2689.347 kb on - strand at 2689.389 kb on - strand at 2689.408 kb on + strand at 2689.422 kb on + strand at 2689.423 kb on - strand at 2689.560 kb on - strand at 2689.560 kb on - strand at 2689.560 kb on - strand at 2689.687 kb on + strand, within Pf6N2E2_2275 at 2689.688 kb on - strand, within Pf6N2E2_2275 at 2689.788 kb on + strand, within Pf6N2E2_2275 at 2689.788 kb on + strand, within Pf6N2E2_2275 at 2689.788 kb on + strand, within Pf6N2E2_2275 at 2689.789 kb on - strand, within Pf6N2E2_2275 at 2689.789 kb on - strand, within Pf6N2E2_2275 at 2689.852 kb on + strand, within Pf6N2E2_2275 at 2689.853 kb on - strand, within Pf6N2E2_2275 at 2689.856 kb on + strand, within Pf6N2E2_2275 at 2689.856 kb on + strand, within Pf6N2E2_2275 at 2689.856 kb on + strand, within Pf6N2E2_2275 at 2689.857 kb on - strand, within Pf6N2E2_2275 at 2690.014 kb on + strand, within Pf6N2E2_2275 at 2690.014 kb on + strand, within Pf6N2E2_2275 at 2690.015 kb on - strand, within Pf6N2E2_2275 at 2690.015 kb on - strand, within Pf6N2E2_2275 at 2690.191 kb on - strand, within Pf6N2E2_2275
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 2,687,055 - +0.7 2,687,060 + +0.1 2,687,061 - +1.2 2,687,061 - -0.0 2,687,084 + +1.3 2,687,084 + +0.0 2,687,084 + +0.7 2,687,084 + +1.8 2,687,084 + -0.9 2,687,085 - +1.6 2,687,160 + Pf6N2E2_2273 0.12 +0.3 2,687,161 - Pf6N2E2_2273 0.12 -2.1 2,687,291 + Pf6N2E2_2273 0.30 -0.2 2,687,291 + Pf6N2E2_2273 0.30 +0.5 2,687,291 + Pf6N2E2_2273 0.30 -2.0 2,687,291 + Pf6N2E2_2273 0.30 +0.6 2,687,292 - Pf6N2E2_2273 0.30 -0.2 2,687,292 - Pf6N2E2_2273 0.30 +0.7 2,687,292 - Pf6N2E2_2273 0.30 -1.6 2,687,292 - Pf6N2E2_2273 0.30 +0.4 2,687,597 + Pf6N2E2_2273 0.73 +0.1 2,687,598 - Pf6N2E2_2273 0.73 +1.0 2,687,749 + +1.0 2,687,749 + +0.1 2,687,862 + -2.5 2,687,863 - -3.0 2,688,018 - Pf6N2E2_2274 0.13 +0.2 2,688,186 + Pf6N2E2_2274 0.25 +0.2 2,688,187 - Pf6N2E2_2274 0.25 -2.9 2,688,187 - Pf6N2E2_2274 0.25 -1.5 2,688,238 + Pf6N2E2_2274 0.29 -0.1 2,688,239 - Pf6N2E2_2274 0.29 -3.7 2,688,315 + Pf6N2E2_2274 0.34 +0.4 2,688,316 - Pf6N2E2_2274 0.34 -3.0 2,688,316 - Pf6N2E2_2274 0.34 -4.4 2,688,316 - Pf6N2E2_2274 0.34 -2.1 2,688,327 - Pf6N2E2_2274 0.35 +0.9 2,688,335 - Pf6N2E2_2274 0.36 -3.2 2,688,335 - Pf6N2E2_2274 0.36 -0.9 2,689,216 - -3.7 2,689,221 + -1.9 2,689,235 + -0.6 2,689,235 + +0.0 2,689,236 - +0.0 2,689,344 + -1.3 2,689,344 + -1.3 2,689,344 + +1.1 2,689,345 - +0.3 2,689,345 - +0.4 2,689,345 - -0.2 2,689,345 - +0.1 2,689,345 - -0.2 2,689,345 - +0.0 2,689,347 - +0.6 2,689,347 - +0.5 2,689,347 - -1.0 2,689,347 - +0.8 2,689,347 - +0.9 2,689,347 - +1.1 2,689,389 - +1.0 2,689,408 + +0.0 2,689,422 + -1.6 2,689,423 - +1.9 2,689,560 - +0.3 2,689,560 - -1.6 2,689,560 - -0.8 2,689,687 + Pf6N2E2_2275 0.11 -0.7 2,689,688 - Pf6N2E2_2275 0.11 -1.8 2,689,788 + Pf6N2E2_2275 0.21 -1.0 2,689,788 + Pf6N2E2_2275 0.21 +1.2 2,689,788 + Pf6N2E2_2275 0.21 -0.5 2,689,789 - Pf6N2E2_2275 0.21 +1.4 2,689,789 - Pf6N2E2_2275 0.21 -2.3 2,689,852 + Pf6N2E2_2275 0.28 -3.0 2,689,853 - Pf6N2E2_2275 0.28 +0.7 2,689,856 + Pf6N2E2_2275 0.28 +1.7 2,689,856 + Pf6N2E2_2275 0.28 -1.3 2,689,856 + Pf6N2E2_2275 0.28 +0.8 2,689,857 - Pf6N2E2_2275 0.28 -0.4 2,690,014 + Pf6N2E2_2275 0.44 -0.0 2,690,014 + Pf6N2E2_2275 0.44 +1.0 2,690,015 - Pf6N2E2_2275 0.44 -0.4 2,690,015 - Pf6N2E2_2275 0.44 -0.2 2,690,191 - Pf6N2E2_2275 0.62 -0.3
Or see this region's nucleotide sequence