Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2074

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2073 and Pf6N2E2_2074 overlap by 17 nucleotidesPf6N2E2_2074 and Pf6N2E2_2075 are separated by 158 nucleotides Pf6N2E2_2073 - Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2), at 2,466,228 to 2,467,976 _2073 Pf6N2E2_2074 - required for sulfate utilization, putative electron transport protein for sulfite reductase (from data), at 2,467,960 to 2,468,454 _2074 Pf6N2E2_2075 - Peptidase, U7 family, at 2,468,613 to 2,469,644 _2075 Position (kb) 2467 2468 2469Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2467.026 kb on + strand, within Pf6N2E2_2073at 2467.026 kb on + strand, within Pf6N2E2_2073at 2467.027 kb on - strand, within Pf6N2E2_2073at 2467.027 kb on - strand, within Pf6N2E2_2073at 2467.027 kb on - strand, within Pf6N2E2_2073at 2467.209 kb on + strand, within Pf6N2E2_2073at 2467.317 kb on + strand, within Pf6N2E2_2073at 2467.648 kb on - strand, within Pf6N2E2_2073at 2467.764 kb on + strand, within Pf6N2E2_2073at 2467.764 kb on + strand, within Pf6N2E2_2073at 2467.878 kb on + strandat 2467.878 kb on + strandat 2467.878 kb on + strandat 2467.879 kb on - strandat 2467.892 kb on + strandat 2467.892 kb on + strandat 2467.920 kb on + strandat 2467.920 kb on + strandat 2467.920 kb on + strandat 2467.921 kb on - strandat 2467.921 kb on - strandat 2467.921 kb on - strandat 2467.928 kb on + strandat 2467.928 kb on + strandat 2467.928 kb on + strandat 2467.928 kb on + strandat 2467.959 kb on + strandat 2467.959 kb on + strandat 2467.960 kb on - strandat 2468.314 kb on + strand, within Pf6N2E2_2074at 2468.315 kb on - strand, within Pf6N2E2_2074at 2468.407 kb on + strandat 2468.407 kb on + strandat 2468.408 kb on - strandat 2468.603 kb on - strandat 2468.603 kb on - strandat 2468.615 kb on - strandat 2468.615 kb on - strandat 2468.723 kb on - strand, within Pf6N2E2_2075at 2468.735 kb on - strand, within Pf6N2E2_2075at 2468.873 kb on - strand, within Pf6N2E2_2075at 2469.214 kb on + strand, within Pf6N2E2_2075at 2469.215 kb on - strand, within Pf6N2E2_2075at 2469.255 kb on + strand, within Pf6N2E2_2075at 2469.256 kb on - strand, within Pf6N2E2_2075at 2469.256 kb on - strand, within Pf6N2E2_2075at 2469.256 kb on - strand, within Pf6N2E2_2075at 2469.256 kb on - strand, within Pf6N2E2_2075at 2469.256 kb on - strand, within Pf6N2E2_2075at 2469.256 kb on - strand, within Pf6N2E2_2075at 2469.256 kb on - strand, within Pf6N2E2_2075

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,467,026 + Pf6N2E2_2073 0.46 -1.7
2,467,026 + Pf6N2E2_2073 0.46 -2.6
2,467,027 - Pf6N2E2_2073 0.46 -3.7
2,467,027 - Pf6N2E2_2073 0.46 -1.0
2,467,027 - Pf6N2E2_2073 0.46 -2.0
2,467,209 + Pf6N2E2_2073 0.56 -3.7
2,467,317 + Pf6N2E2_2073 0.62 -1.0
2,467,648 - Pf6N2E2_2073 0.81 -3.6
2,467,764 + Pf6N2E2_2073 0.88 -4.7
2,467,764 + Pf6N2E2_2073 0.88 -3.7
2,467,878 + -3.8
2,467,878 + -3.9
2,467,878 + -1.8
2,467,879 - -2.9
2,467,892 + -1.0
2,467,892 + -1.0
2,467,920 + -2.2
2,467,920 + -3.6
2,467,920 + -3.6
2,467,921 - -0.8
2,467,921 - -0.7
2,467,921 - -2.0
2,467,928 + -2.0
2,467,928 + -2.9
2,467,928 + -3.9
2,467,928 + -0.8
2,467,959 + -3.2
2,467,959 + -2.0
2,467,960 - -1.4
2,468,314 + Pf6N2E2_2074 0.72 -0.9
2,468,315 - Pf6N2E2_2074 0.72 -3.6
2,468,407 + -1.8
2,468,407 + -0.1
2,468,408 - -0.7
2,468,603 - -0.9
2,468,603 - +1.7
2,468,615 - -0.5
2,468,615 - -1.6
2,468,723 - Pf6N2E2_2075 0.11 +0.9
2,468,735 - Pf6N2E2_2075 0.12 +2.3
2,468,873 - Pf6N2E2_2075 0.25 +0.3
2,469,214 + Pf6N2E2_2075 0.58 -0.0
2,469,215 - Pf6N2E2_2075 0.58 +0.7
2,469,255 + Pf6N2E2_2075 0.62 +0.9
2,469,256 - Pf6N2E2_2075 0.62 -1.0
2,469,256 - Pf6N2E2_2075 0.62 +0.2
2,469,256 - Pf6N2E2_2075 0.62 -0.7
2,469,256 - Pf6N2E2_2075 0.62 +1.1
2,469,256 - Pf6N2E2_2075 0.62 -0.4
2,469,256 - Pf6N2E2_2075 0.62 +0.1
2,469,256 - Pf6N2E2_2075 0.62 -0.1

Or see this region's nucleotide sequence