Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2073 and Pf6N2E2_2074 overlap by 17 nucleotides Pf6N2E2_2074 and Pf6N2E2_2075 are separated by 158 nucleotides
Pf6N2E2_2073 - Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2), at 2,466,228 to 2,467,976
_2073
Pf6N2E2_2074 - required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) , at 2,467,960 to 2,468,454
_2074
Pf6N2E2_2075 - Peptidase, U7 family, at 2,468,613 to 2,469,644
_2075
Position (kb)
2467
2468
2469 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2467.026 kb on + strand, within Pf6N2E2_2073 at 2467.026 kb on + strand, within Pf6N2E2_2073 at 2467.027 kb on - strand, within Pf6N2E2_2073 at 2467.027 kb on - strand, within Pf6N2E2_2073 at 2467.027 kb on - strand, within Pf6N2E2_2073 at 2467.209 kb on + strand, within Pf6N2E2_2073 at 2467.317 kb on + strand, within Pf6N2E2_2073 at 2467.648 kb on - strand, within Pf6N2E2_2073 at 2467.764 kb on + strand, within Pf6N2E2_2073 at 2467.764 kb on + strand, within Pf6N2E2_2073 at 2467.878 kb on + strand at 2467.878 kb on + strand at 2467.878 kb on + strand at 2467.879 kb on - strand at 2467.892 kb on + strand at 2467.892 kb on + strand at 2467.920 kb on + strand at 2467.920 kb on + strand at 2467.920 kb on + strand at 2467.921 kb on - strand at 2467.921 kb on - strand at 2467.921 kb on - strand at 2467.928 kb on + strand at 2467.928 kb on + strand at 2467.928 kb on + strand at 2467.928 kb on + strand at 2467.959 kb on + strand at 2467.959 kb on + strand at 2467.960 kb on - strand at 2468.314 kb on + strand, within Pf6N2E2_2074 at 2468.315 kb on - strand, within Pf6N2E2_2074 at 2468.407 kb on + strand at 2468.407 kb on + strand at 2468.408 kb on - strand at 2468.603 kb on - strand at 2468.603 kb on - strand at 2468.615 kb on - strand at 2468.615 kb on - strand at 2468.723 kb on - strand, within Pf6N2E2_2075 at 2468.735 kb on - strand, within Pf6N2E2_2075 at 2468.873 kb on - strand, within Pf6N2E2_2075 at 2469.214 kb on + strand, within Pf6N2E2_2075 at 2469.215 kb on - strand, within Pf6N2E2_2075 at 2469.255 kb on + strand, within Pf6N2E2_2075 at 2469.256 kb on - strand, within Pf6N2E2_2075 at 2469.256 kb on - strand, within Pf6N2E2_2075 at 2469.256 kb on - strand, within Pf6N2E2_2075 at 2469.256 kb on - strand, within Pf6N2E2_2075 at 2469.256 kb on - strand, within Pf6N2E2_2075 at 2469.256 kb on - strand, within Pf6N2E2_2075 at 2469.256 kb on - strand, within Pf6N2E2_2075
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 2,467,026 + Pf6N2E2_2073 0.46 -1.7 2,467,026 + Pf6N2E2_2073 0.46 -2.6 2,467,027 - Pf6N2E2_2073 0.46 -3.7 2,467,027 - Pf6N2E2_2073 0.46 -1.0 2,467,027 - Pf6N2E2_2073 0.46 -2.0 2,467,209 + Pf6N2E2_2073 0.56 -3.7 2,467,317 + Pf6N2E2_2073 0.62 -1.0 2,467,648 - Pf6N2E2_2073 0.81 -3.6 2,467,764 + Pf6N2E2_2073 0.88 -4.7 2,467,764 + Pf6N2E2_2073 0.88 -3.7 2,467,878 + -3.8 2,467,878 + -3.9 2,467,878 + -1.8 2,467,879 - -2.9 2,467,892 + -1.0 2,467,892 + -1.0 2,467,920 + -2.2 2,467,920 + -3.6 2,467,920 + -3.6 2,467,921 - -0.8 2,467,921 - -0.7 2,467,921 - -2.0 2,467,928 + -2.0 2,467,928 + -2.9 2,467,928 + -3.9 2,467,928 + -0.8 2,467,959 + -3.2 2,467,959 + -2.0 2,467,960 - -1.4 2,468,314 + Pf6N2E2_2074 0.72 -0.9 2,468,315 - Pf6N2E2_2074 0.72 -3.6 2,468,407 + -1.8 2,468,407 + -0.1 2,468,408 - -0.7 2,468,603 - -0.9 2,468,603 - +1.7 2,468,615 - -0.5 2,468,615 - -1.6 2,468,723 - Pf6N2E2_2075 0.11 +0.9 2,468,735 - Pf6N2E2_2075 0.12 +2.3 2,468,873 - Pf6N2E2_2075 0.25 +0.3 2,469,214 + Pf6N2E2_2075 0.58 -0.0 2,469,215 - Pf6N2E2_2075 0.58 +0.7 2,469,255 + Pf6N2E2_2075 0.62 +0.9 2,469,256 - Pf6N2E2_2075 0.62 -1.0 2,469,256 - Pf6N2E2_2075 0.62 +0.2 2,469,256 - Pf6N2E2_2075 0.62 -0.7 2,469,256 - Pf6N2E2_2075 0.62 +1.1 2,469,256 - Pf6N2E2_2075 0.62 -0.4 2,469,256 - Pf6N2E2_2075 0.62 +0.1 2,469,256 - Pf6N2E2_2075 0.62 -0.1
Or see this region's nucleotide sequence