Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1776 and Pf6N2E2_1777 are separated by 145 nucleotides Pf6N2E2_1777 and Pf6N2E2_1778 overlap by 4 nucleotides Pf6N2E2_1778 and Pf6N2E2_1779 are separated by 75 nucleotides Pf6N2E2_1779 and Pf6N2E2_1780 are separated by 3 nucleotides
Pf6N2E2_1776 - Chemotaxis protein CheD, at 2,101,387 to 2,101,755
_1776
Pf6N2E2_1777 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 2,101,901 to 2,102,704
_1777
Pf6N2E2_1778 - Positive regulator of CheA protein activity (CheW), at 2,102,701 to 2,103,225
_1778
Pf6N2E2_1779 - Positive regulator of CheA protein activity (CheW), at 2,103,301 to 2,103,813
_1779
Pf6N2E2_1780 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 2,103,817 to 2,106,207
_1780
Position (kb)
2102
2103
2104 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2101.768 kb on - strand at 2101.827 kb on + strand at 2101.831 kb on + strand at 2101.831 kb on + strand at 2101.831 kb on + strand at 2101.831 kb on + strand at 2101.831 kb on + strand at 2101.831 kb on + strand at 2101.832 kb on - strand at 2101.832 kb on - strand at 2101.832 kb on - strand at 2101.880 kb on + strand at 2101.920 kb on + strand at 2101.924 kb on + strand at 2101.924 kb on + strand at 2101.924 kb on + strand at 2101.925 kb on - strand at 2101.925 kb on - strand at 2101.925 kb on - strand at 2102.030 kb on + strand, within Pf6N2E2_1777 at 2102.031 kb on - strand, within Pf6N2E2_1777 at 2102.058 kb on + strand, within Pf6N2E2_1777 at 2102.058 kb on + strand, within Pf6N2E2_1777 at 2102.058 kb on + strand, within Pf6N2E2_1777 at 2102.059 kb on - strand, within Pf6N2E2_1777 at 2102.059 kb on - strand, within Pf6N2E2_1777 at 2102.140 kb on + strand, within Pf6N2E2_1777 at 2102.140 kb on + strand, within Pf6N2E2_1777 at 2102.208 kb on + strand, within Pf6N2E2_1777 at 2102.208 kb on + strand, within Pf6N2E2_1777 at 2102.208 kb on + strand, within Pf6N2E2_1777 at 2102.209 kb on - strand, within Pf6N2E2_1777 at 2102.362 kb on - strand, within Pf6N2E2_1777 at 2102.398 kb on + strand, within Pf6N2E2_1777 at 2102.398 kb on + strand, within Pf6N2E2_1777 at 2102.399 kb on - strand, within Pf6N2E2_1777 at 2102.399 kb on - strand, within Pf6N2E2_1777 at 2102.399 kb on - strand, within Pf6N2E2_1777 at 2102.403 kb on - strand, within Pf6N2E2_1777 at 2102.547 kb on + strand, within Pf6N2E2_1777 at 2102.550 kb on + strand, within Pf6N2E2_1777 at 2102.551 kb on - strand, within Pf6N2E2_1777 at 2102.551 kb on - strand, within Pf6N2E2_1777 at 2102.551 kb on - strand, within Pf6N2E2_1777 at 2102.559 kb on + strand, within Pf6N2E2_1777 at 2102.631 kb on - strand at 2102.786 kb on - strand, within Pf6N2E2_1778 at 2102.838 kb on + strand, within Pf6N2E2_1778 at 2102.838 kb on + strand, within Pf6N2E2_1778 at 2102.839 kb on - strand, within Pf6N2E2_1778 at 2102.973 kb on + strand, within Pf6N2E2_1778 at 2103.105 kb on - strand, within Pf6N2E2_1778 at 2103.174 kb on - strand at 2103.174 kb on - strand at 2103.237 kb on - strand at 2103.250 kb on - strand at 2103.279 kb on - strand at 2103.279 kb on - strand at 2103.279 kb on - strand at 2103.637 kb on - strand, within Pf6N2E2_1779 at 2103.703 kb on - strand, within Pf6N2E2_1779 at 2103.713 kb on + strand, within Pf6N2E2_1779 at 2103.714 kb on - strand, within Pf6N2E2_1779 at 2103.714 kb on - strand, within Pf6N2E2_1779 at 2103.730 kb on + strand, within Pf6N2E2_1779
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 2,101,768 - +0.6 2,101,827 + -0.5 2,101,831 + -1.2 2,101,831 + +0.8 2,101,831 + +0.4 2,101,831 + +0.5 2,101,831 + -0.3 2,101,831 + -1.8 2,101,832 - +0.6 2,101,832 - +1.2 2,101,832 - -1.7 2,101,880 + +1.1 2,101,920 + -2.8 2,101,924 + -1.6 2,101,924 + -0.0 2,101,924 + -2.1 2,101,925 - +0.6 2,101,925 - +1.5 2,101,925 - +0.7 2,102,030 + Pf6N2E2_1777 0.16 +1.3 2,102,031 - Pf6N2E2_1777 0.16 -1.9 2,102,058 + Pf6N2E2_1777 0.20 -2.1 2,102,058 + Pf6N2E2_1777 0.20 +0.1 2,102,058 + Pf6N2E2_1777 0.20 +0.5 2,102,059 - Pf6N2E2_1777 0.20 -0.5 2,102,059 - Pf6N2E2_1777 0.20 +0.7 2,102,140 + Pf6N2E2_1777 0.30 +1.1 2,102,140 + Pf6N2E2_1777 0.30 -0.7 2,102,208 + Pf6N2E2_1777 0.38 -2.8 2,102,208 + Pf6N2E2_1777 0.38 -1.2 2,102,208 + Pf6N2E2_1777 0.38 -1.0 2,102,209 - Pf6N2E2_1777 0.38 -3.2 2,102,362 - Pf6N2E2_1777 0.57 +2.0 2,102,398 + Pf6N2E2_1777 0.62 -3.5 2,102,398 + Pf6N2E2_1777 0.62 -0.7 2,102,399 - Pf6N2E2_1777 0.62 +2.2 2,102,399 - Pf6N2E2_1777 0.62 +0.2 2,102,399 - Pf6N2E2_1777 0.62 +0.9 2,102,403 - Pf6N2E2_1777 0.62 +1.0 2,102,547 + Pf6N2E2_1777 0.80 -1.2 2,102,550 + Pf6N2E2_1777 0.81 -0.7 2,102,551 - Pf6N2E2_1777 0.81 +0.7 2,102,551 - Pf6N2E2_1777 0.81 -2.4 2,102,551 - Pf6N2E2_1777 0.81 +0.6 2,102,559 + Pf6N2E2_1777 0.82 +0.9 2,102,631 - -0.1 2,102,786 - Pf6N2E2_1778 0.16 -1.9 2,102,838 + Pf6N2E2_1778 0.26 -1.9 2,102,838 + Pf6N2E2_1778 0.26 -1.6 2,102,839 - Pf6N2E2_1778 0.26 +0.0 2,102,973 + Pf6N2E2_1778 0.52 -1.4 2,103,105 - Pf6N2E2_1778 0.77 +0.0 2,103,174 - -0.0 2,103,174 - -1.4 2,103,237 - +0.1 2,103,250 - +0.4 2,103,279 - +1.4 2,103,279 - -0.7 2,103,279 - +1.4 2,103,637 - Pf6N2E2_1779 0.65 +1.2 2,103,703 - Pf6N2E2_1779 0.78 +1.6 2,103,713 + Pf6N2E2_1779 0.80 +1.5 2,103,714 - Pf6N2E2_1779 0.81 -1.4 2,103,714 - Pf6N2E2_1779 0.81 +0.1 2,103,730 + Pf6N2E2_1779 0.84 -1.1
Or see this region's nucleotide sequence