Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1776

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1775 and Pf6N2E2_1776 overlap by 4 nucleotidesPf6N2E2_1776 and Pf6N2E2_1777 are separated by 145 nucleotidesPf6N2E2_1777 and Pf6N2E2_1778 overlap by 4 nucleotides Pf6N2E2_1775 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 2,100,314 to 2,101,390 _1775 Pf6N2E2_1776 - Chemotaxis protein CheD, at 2,101,387 to 2,101,755 _1776 Pf6N2E2_1777 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 2,101,901 to 2,102,704 _1777 Pf6N2E2_1778 - Positive regulator of CheA protein activity (CheW), at 2,102,701 to 2,103,225 _1778 Position (kb) 2101 2102Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2100.418 kb on - strandat 2100.418 kb on - strandat 2100.418 kb on - strandat 2100.647 kb on + strand, within Pf6N2E2_1775at 2100.648 kb on - strand, within Pf6N2E2_1775at 2100.648 kb on - strand, within Pf6N2E2_1775at 2100.653 kb on - strand, within Pf6N2E2_1775at 2100.831 kb on - strand, within Pf6N2E2_1775at 2100.831 kb on - strand, within Pf6N2E2_1775at 2100.865 kb on + strand, within Pf6N2E2_1775at 2100.866 kb on - strand, within Pf6N2E2_1775at 2101.196 kb on - strand, within Pf6N2E2_1775at 2101.273 kb on - strand, within Pf6N2E2_1775at 2101.391 kb on - strandat 2101.418 kb on - strandat 2101.418 kb on - strandat 2101.466 kb on - strand, within Pf6N2E2_1776at 2101.596 kb on - strand, within Pf6N2E2_1776at 2101.596 kb on - strand, within Pf6N2E2_1776at 2101.768 kb on - strandat 2101.827 kb on + strandat 2101.831 kb on + strandat 2101.831 kb on + strandat 2101.831 kb on + strandat 2101.831 kb on + strandat 2101.831 kb on + strandat 2101.831 kb on + strandat 2101.832 kb on - strandat 2101.832 kb on - strandat 2101.832 kb on - strandat 2101.880 kb on + strandat 2101.920 kb on + strandat 2101.924 kb on + strandat 2101.924 kb on + strandat 2101.924 kb on + strandat 2101.925 kb on - strandat 2101.925 kb on - strandat 2101.925 kb on - strandat 2102.030 kb on + strand, within Pf6N2E2_1777at 2102.031 kb on - strand, within Pf6N2E2_1777at 2102.058 kb on + strand, within Pf6N2E2_1777at 2102.058 kb on + strand, within Pf6N2E2_1777at 2102.058 kb on + strand, within Pf6N2E2_1777at 2102.059 kb on - strand, within Pf6N2E2_1777at 2102.059 kb on - strand, within Pf6N2E2_1777at 2102.140 kb on + strand, within Pf6N2E2_1777at 2102.140 kb on + strand, within Pf6N2E2_1777at 2102.208 kb on + strand, within Pf6N2E2_1777at 2102.208 kb on + strand, within Pf6N2E2_1777at 2102.208 kb on + strand, within Pf6N2E2_1777at 2102.209 kb on - strand, within Pf6N2E2_1777at 2102.362 kb on - strand, within Pf6N2E2_1777at 2102.398 kb on + strand, within Pf6N2E2_1777at 2102.398 kb on + strand, within Pf6N2E2_1777at 2102.399 kb on - strand, within Pf6N2E2_1777at 2102.399 kb on - strand, within Pf6N2E2_1777at 2102.399 kb on - strand, within Pf6N2E2_1777at 2102.403 kb on - strand, within Pf6N2E2_1777at 2102.547 kb on + strand, within Pf6N2E2_1777at 2102.550 kb on + strand, within Pf6N2E2_1777at 2102.551 kb on - strand, within Pf6N2E2_1777at 2102.551 kb on - strand, within Pf6N2E2_1777at 2102.551 kb on - strand, within Pf6N2E2_1777at 2102.559 kb on + strand, within Pf6N2E2_1777at 2102.631 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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2,100,418 - +0.4
2,100,418 - -1.4
2,100,418 - +0.3
2,100,647 + Pf6N2E2_1775 0.31 +0.2
2,100,648 - Pf6N2E2_1775 0.31 -1.8
2,100,648 - Pf6N2E2_1775 0.31 +1.0
2,100,653 - Pf6N2E2_1775 0.31 -0.2
2,100,831 - Pf6N2E2_1775 0.48 -1.2
2,100,831 - Pf6N2E2_1775 0.48 +1.2
2,100,865 + Pf6N2E2_1775 0.51 +0.5
2,100,866 - Pf6N2E2_1775 0.51 -0.4
2,101,196 - Pf6N2E2_1775 0.82 -0.4
2,101,273 - Pf6N2E2_1775 0.89 -1.3
2,101,391 - -1.8
2,101,418 - +0.7
2,101,418 - -1.2
2,101,466 - Pf6N2E2_1776 0.21 +0.3
2,101,596 - Pf6N2E2_1776 0.57 -1.7
2,101,596 - Pf6N2E2_1776 0.57 -1.2
2,101,768 - +0.6
2,101,827 + -0.5
2,101,831 + -1.2
2,101,831 + +0.8
2,101,831 + +0.4
2,101,831 + +0.5
2,101,831 + -0.3
2,101,831 + -1.8
2,101,832 - +0.6
2,101,832 - +1.2
2,101,832 - -1.7
2,101,880 + +1.1
2,101,920 + -2.8
2,101,924 + -1.6
2,101,924 + -0.0
2,101,924 + -2.1
2,101,925 - +0.6
2,101,925 - +1.5
2,101,925 - +0.7
2,102,030 + Pf6N2E2_1777 0.16 +1.3
2,102,031 - Pf6N2E2_1777 0.16 -1.9
2,102,058 + Pf6N2E2_1777 0.20 -2.1
2,102,058 + Pf6N2E2_1777 0.20 +0.1
2,102,058 + Pf6N2E2_1777 0.20 +0.5
2,102,059 - Pf6N2E2_1777 0.20 -0.5
2,102,059 - Pf6N2E2_1777 0.20 +0.7
2,102,140 + Pf6N2E2_1777 0.30 +1.1
2,102,140 + Pf6N2E2_1777 0.30 -0.7
2,102,208 + Pf6N2E2_1777 0.38 -2.8
2,102,208 + Pf6N2E2_1777 0.38 -1.2
2,102,208 + Pf6N2E2_1777 0.38 -1.0
2,102,209 - Pf6N2E2_1777 0.38 -3.2
2,102,362 - Pf6N2E2_1777 0.57 +2.0
2,102,398 + Pf6N2E2_1777 0.62 -3.5
2,102,398 + Pf6N2E2_1777 0.62 -0.7
2,102,399 - Pf6N2E2_1777 0.62 +2.2
2,102,399 - Pf6N2E2_1777 0.62 +0.2
2,102,399 - Pf6N2E2_1777 0.62 +0.9
2,102,403 - Pf6N2E2_1777 0.62 +1.0
2,102,547 + Pf6N2E2_1777 0.80 -1.2
2,102,550 + Pf6N2E2_1777 0.81 -0.7
2,102,551 - Pf6N2E2_1777 0.81 +0.7
2,102,551 - Pf6N2E2_1777 0.81 -2.4
2,102,551 - Pf6N2E2_1777 0.81 +0.6
2,102,559 + Pf6N2E2_1777 0.82 +0.9
2,102,631 - -0.1

Or see this region's nucleotide sequence