Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1441

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1440 and Pf6N2E2_1441 are separated by 15 nucleotidesPf6N2E2_1441 and Pf6N2E2_1442 are separated by 120 nucleotides Pf6N2E2_1440 - Putative tRNA-m1A22 methylase, at 1,690,418 to 1,691,113 _1440 Pf6N2E2_1441 - Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-), at 1,691,129 to 1,692,055 _1441 Pf6N2E2_1442 - Transcriptional regulators of sugar metabolism, at 1,692,176 to 1,692,970 _1442 Position (kb) 1691 1692 1693Strain fitness (log2 ratio) -2 -1 0 1 2at 1690.227 kb on + strandat 1690.228 kb on - strandat 1690.277 kb on - strandat 1690.277 kb on - strandat 1690.330 kb on - strandat 1690.330 kb on - strandat 1690.340 kb on + strandat 1690.351 kb on - strandat 1690.596 kb on + strand, within Pf6N2E2_1440at 1690.596 kb on + strand, within Pf6N2E2_1440at 1690.614 kb on + strand, within Pf6N2E2_1440at 1690.615 kb on - strand, within Pf6N2E2_1440at 1690.751 kb on + strand, within Pf6N2E2_1440at 1690.751 kb on + strand, within Pf6N2E2_1440at 1690.752 kb on - strand, within Pf6N2E2_1440at 1690.752 kb on - strand, within Pf6N2E2_1440at 1691.020 kb on - strand, within Pf6N2E2_1440at 1691.065 kb on + strandat 1691.066 kb on - strandat 1691.066 kb on - strandat 1691.066 kb on - strandat 1691.137 kb on - strandat 1691.251 kb on - strand, within Pf6N2E2_1441at 1691.354 kb on + strand, within Pf6N2E2_1441at 1691.354 kb on + strand, within Pf6N2E2_1441at 1691.355 kb on - strand, within Pf6N2E2_1441at 1692.079 kb on - strandat 1692.101 kb on - strandat 1692.139 kb on + strandat 1692.140 kb on - strandat 1692.140 kb on - strandat 1692.140 kb on - strandat 1692.140 kb on - strandat 1692.140 kb on - strandat 1692.140 kb on - strandat 1692.170 kb on - strandat 1692.182 kb on - strandat 1692.182 kb on - strandat 1692.182 kb on - strandat 1692.228 kb on + strandat 1692.228 kb on + strandat 1692.462 kb on + strand, within Pf6N2E2_1442at 1692.463 kb on - strand, within Pf6N2E2_1442at 1692.749 kb on + strand, within Pf6N2E2_1442at 1692.750 kb on - strand, within Pf6N2E2_1442at 1692.750 kb on - strand, within Pf6N2E2_1442at 1692.750 kb on - strand, within Pf6N2E2_1442at 1692.783 kb on - strand, within Pf6N2E2_1442at 1692.795 kb on + strand, within Pf6N2E2_1442at 1692.809 kb on + strand, within Pf6N2E2_1442at 1693.029 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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1,690,227 + +0.7
1,690,228 - +0.6
1,690,277 - +0.8
1,690,277 - +1.6
1,690,330 - +0.0
1,690,330 - +1.1
1,690,340 + -1.5
1,690,351 - +0.3
1,690,596 + Pf6N2E2_1440 0.26 +0.4
1,690,596 + Pf6N2E2_1440 0.26 +0.7
1,690,614 + Pf6N2E2_1440 0.28 -0.7
1,690,615 - Pf6N2E2_1440 0.28 -2.7
1,690,751 + Pf6N2E2_1440 0.48 +0.5
1,690,751 + Pf6N2E2_1440 0.48 +1.8
1,690,752 - Pf6N2E2_1440 0.48 -1.3
1,690,752 - Pf6N2E2_1440 0.48 -0.5
1,691,020 - Pf6N2E2_1440 0.86 +0.9
1,691,065 + +0.2
1,691,066 - +0.8
1,691,066 - -1.0
1,691,066 - +0.2
1,691,137 - -1.4
1,691,251 - Pf6N2E2_1441 0.13 -0.7
1,691,354 + Pf6N2E2_1441 0.24 -0.9
1,691,354 + Pf6N2E2_1441 0.24 -2.3
1,691,355 - Pf6N2E2_1441 0.24 -0.2
1,692,079 - +1.5
1,692,101 - +1.6
1,692,139 + -0.2
1,692,140 - -0.7
1,692,140 - -0.6
1,692,140 - -0.5
1,692,140 - -1.7
1,692,140 - -0.7
1,692,140 - -0.4
1,692,170 - +0.7
1,692,182 - -1.7
1,692,182 - -0.5
1,692,182 - +0.5
1,692,228 + +0.3
1,692,228 + +0.6
1,692,462 + Pf6N2E2_1442 0.36 -2.0
1,692,463 - Pf6N2E2_1442 0.36 +0.2
1,692,749 + Pf6N2E2_1442 0.72 -0.9
1,692,750 - Pf6N2E2_1442 0.72 +1.1
1,692,750 - Pf6N2E2_1442 0.72 +1.7
1,692,750 - Pf6N2E2_1442 0.72 -0.3
1,692,783 - Pf6N2E2_1442 0.76 +0.3
1,692,795 + Pf6N2E2_1442 0.78 -1.4
1,692,809 + Pf6N2E2_1442 0.80 +0.9
1,693,029 - +0.1

Or see this region's nucleotide sequence