Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_495 and Pf6N2E2_496 are separated by 183 nucleotides Pf6N2E2_496 and Pf6N2E2_497 are separated by 0 nucleotides
Pf6N2E2_495 - YD repeat protein, at 561,448 to 562,563
_495
Pf6N2E2_496 - Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) <small>(from data)</small>, at 562,747 to 564,021
_496
Pf6N2E2_497 - Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism, at 564,022 to 565,389
_497
Position (kb) 562
563
564
565 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 561.834 kb on + strand, within Pf6N2E2_495 at 562.001 kb on + strand, within Pf6N2E2_495 at 562.085 kb on + strand, within Pf6N2E2_495 at 562.184 kb on + strand, within Pf6N2E2_495 at 562.184 kb on + strand, within Pf6N2E2_495 at 562.607 kb on + strand at 562.625 kb on + strand at 562.628 kb on + strand at 562.640 kb on + strand at 562.640 kb on + strand at 562.640 kb on + strand at 562.640 kb on + strand at 562.641 kb on - strand at 562.764 kb on - strand at 562.867 kb on - strand at 562.892 kb on - strand, within Pf6N2E2_496 at 562.898 kb on + strand, within Pf6N2E2_496 at 562.898 kb on + strand, within Pf6N2E2_496 at 562.898 kb on + strand, within Pf6N2E2_496 at 562.898 kb on + strand, within Pf6N2E2_496 at 562.898 kb on + strand, within Pf6N2E2_496 at 562.898 kb on + strand, within Pf6N2E2_496 at 562.899 kb on - strand, within Pf6N2E2_496 at 562.902 kb on + strand, within Pf6N2E2_496 at 562.902 kb on + strand, within Pf6N2E2_496 at 562.902 kb on + strand, within Pf6N2E2_496 at 562.903 kb on - strand at 562.903 kb on - strand, within Pf6N2E2_496 at 562.903 kb on - strand, within Pf6N2E2_496 at 562.903 kb on - strand, within Pf6N2E2_496 at 562.903 kb on - strand, within Pf6N2E2_496 at 562.903 kb on - strand, within Pf6N2E2_496 at 563.021 kb on + strand, within Pf6N2E2_496 at 563.021 kb on + strand, within Pf6N2E2_496 at 563.022 kb on - strand, within Pf6N2E2_496 at 563.022 kb on - strand, within Pf6N2E2_496 at 563.022 kb on - strand, within Pf6N2E2_496 at 563.036 kb on + strand, within Pf6N2E2_496 at 563.036 kb on + strand, within Pf6N2E2_496 at 563.036 kb on + strand, within Pf6N2E2_496 at 563.522 kb on + strand, within Pf6N2E2_496 at 563.522 kb on + strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.523 kb on - strand, within Pf6N2E2_496 at 563.555 kb on + strand, within Pf6N2E2_496 at 563.555 kb on + strand, within Pf6N2E2_496 at 563.556 kb on - strand, within Pf6N2E2_496 at 563.556 kb on - strand, within Pf6N2E2_496 at 563.843 kb on + strand, within Pf6N2E2_496 at 563.936 kb on + strand at 563.937 kb on - strand at 563.937 kb on - strand at 563.937 kb on - strand at 563.937 kb on - strand at 563.937 kb on - strand at 564.024 kb on - strand at 564.141 kb on - strand at 564.141 kb on - strand at 564.617 kb on + strand, within Pf6N2E2_497 at 564.617 kb on + strand, within Pf6N2E2_497 at 564.815 kb on + strand, within Pf6N2E2_497 at 564.815 kb on + strand, within Pf6N2E2_497 at 564.833 kb on + strand, within Pf6N2E2_497 at 564.834 kb on - strand, within Pf6N2E2_497 at 564.834 kb on - strand, within Pf6N2E2_497 at 564.834 kb on - strand, within Pf6N2E2_497
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 561,834 + Pf6N2E2_495 0.35 -0.1 562,001 + Pf6N2E2_495 0.50 +0.3 562,085 + Pf6N2E2_495 0.57 +1.0 562,184 + Pf6N2E2_495 0.66 -0.6 562,184 + Pf6N2E2_495 0.66 -0.1 562,607 + -0.6 562,625 + -0.5 562,628 + -0.6 562,640 + +1.6 562,640 + +1.1 562,640 + +0.2 562,640 + +1.6 562,641 - -2.6 562,764 - -3.2 562,867 - -0.2 562,892 - Pf6N2E2_496 0.11 -1.2 562,898 + Pf6N2E2_496 0.12 -2.0 562,898 + Pf6N2E2_496 0.12 -0.2 562,898 + Pf6N2E2_496 0.12 -1.3 562,898 + Pf6N2E2_496 0.12 -0.8 562,898 + Pf6N2E2_496 0.12 +0.2 562,898 + Pf6N2E2_496 0.12 -0.8 562,899 - Pf6N2E2_496 0.12 -3.1 562,902 + Pf6N2E2_496 0.12 -1.2 562,902 + Pf6N2E2_496 0.12 -2.7 562,902 + Pf6N2E2_496 0.12 +0.0 562,903 - -1.2 562,903 - Pf6N2E2_496 0.12 -2.1 562,903 - Pf6N2E2_496 0.12 -0.4 562,903 - Pf6N2E2_496 0.12 -0.7 562,903 - Pf6N2E2_496 0.12 -3.4 562,903 - Pf6N2E2_496 0.12 -0.4 563,021 + Pf6N2E2_496 0.21 -0.7 563,021 + Pf6N2E2_496 0.21 -2.2 563,022 - Pf6N2E2_496 0.22 -1.5 563,022 - Pf6N2E2_496 0.22 -1.2 563,022 - Pf6N2E2_496 0.22 -0.8 563,036 + Pf6N2E2_496 0.23 -0.2 563,036 + Pf6N2E2_496 0.23 -1.0 563,036 + Pf6N2E2_496 0.23 -1.0 563,522 + Pf6N2E2_496 0.61 -1.8 563,522 + Pf6N2E2_496 0.61 -1.4 563,523 - Pf6N2E2_496 0.61 -2.0 563,523 - Pf6N2E2_496 0.61 -1.6 563,523 - Pf6N2E2_496 0.61 +0.3 563,523 - Pf6N2E2_496 0.61 -0.2 563,523 - Pf6N2E2_496 0.61 -0.8 563,523 - Pf6N2E2_496 0.61 +0.8 563,555 + Pf6N2E2_496 0.63 -2.0 563,555 + Pf6N2E2_496 0.63 -1.0 563,556 - Pf6N2E2_496 0.63 -1.2 563,556 - Pf6N2E2_496 0.63 -2.9 563,843 + Pf6N2E2_496 0.86 -2.0 563,936 + -0.8 563,937 - -0.8 563,937 - -1.7 563,937 - -0.7 563,937 - -0.2 563,937 - -2.7 564,024 - +0.6 564,141 - -0.7 564,141 - -0.4 564,617 + Pf6N2E2_497 0.43 -1.1 564,617 + Pf6N2E2_497 0.43 -2.0 564,815 + Pf6N2E2_497 0.58 -2.6 564,815 + Pf6N2E2_497 0.58 -1.0 564,833 + Pf6N2E2_497 0.59 -3.0 564,834 - Pf6N2E2_497 0.59 +0.1 564,834 - Pf6N2E2_497 0.59 -1.1 564,834 - Pf6N2E2_497 0.59 -3.6
Or see this region's nucleotide sequence