Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6078 and Pf6N2E2_6079 are separated by 9 nucleotides Pf6N2E2_6079 and Pf6N2E2_6080 are separated by 32 nucleotides Pf6N2E2_6080 and Pf6N2E2_6081 are separated by 90 nucleotides Pf6N2E2_6081 and Pf6N2E2_6082 are separated by 6 nucleotides
Pf6N2E2_6078 - Xaa-Pro aminopeptidase (EC 3.4.11.9), at 6,897,599 to 6,899,407
_6078
Pf6N2E2_6079 - 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent, at 6,899,417 to 6,900,007
_6079
Pf6N2E2_6080 - Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein, at 6,900,040 to 6,900,768
_6080
Pf6N2E2_6081 - Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent, at 6,900,859 to 6,901,428
_6081
Pf6N2E2_6082 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 6,901,435 to 6,901,716
_6082
Position (kb)
6900
6901 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 6899.040 kb on - strand, within Pf6N2E2_6078 at 6899.078 kb on + strand, within Pf6N2E2_6078 at 6899.147 kb on + strand, within Pf6N2E2_6078 at 6899.148 kb on - strand, within Pf6N2E2_6078 at 6899.148 kb on - strand, within Pf6N2E2_6078 at 6899.148 kb on - strand, within Pf6N2E2_6078 at 6899.148 kb on - strand, within Pf6N2E2_6078 at 6899.410 kb on + strand at 6899.410 kb on + strand at 6899.580 kb on + strand, within Pf6N2E2_6079 at 6899.580 kb on + strand, within Pf6N2E2_6079 at 6899.580 kb on + strand, within Pf6N2E2_6079 at 6899.580 kb on + strand, within Pf6N2E2_6079 at 6899.581 kb on - strand, within Pf6N2E2_6079 at 6899.581 kb on - strand, within Pf6N2E2_6079 at 6899.581 kb on - strand, within Pf6N2E2_6079 at 6899.581 kb on - strand, within Pf6N2E2_6079 at 6899.581 kb on - strand, within Pf6N2E2_6079 at 6899.581 kb on - strand, within Pf6N2E2_6079 at 6899.581 kb on - strand, within Pf6N2E2_6079 at 6899.746 kb on + strand, within Pf6N2E2_6079 at 6899.746 kb on + strand, within Pf6N2E2_6079 at 6899.746 kb on + strand, within Pf6N2E2_6079 at 6899.746 kb on + strand, within Pf6N2E2_6079 at 6899.747 kb on - strand, within Pf6N2E2_6079 at 6899.747 kb on - strand, within Pf6N2E2_6079 at 6899.747 kb on - strand, within Pf6N2E2_6079 at 6899.747 kb on - strand, within Pf6N2E2_6079 at 6899.823 kb on + strand, within Pf6N2E2_6079 at 6899.823 kb on + strand, within Pf6N2E2_6079 at 6899.824 kb on - strand, within Pf6N2E2_6079 at 6899.888 kb on + strand, within Pf6N2E2_6079 at 6899.958 kb on + strand at 6899.985 kb on + strand at 6900.041 kb on + strand at 6900.042 kb on - strand at 6900.110 kb on + strand at 6900.110 kb on + strand at 6900.110 kb on + strand at 6900.116 kb on + strand, within Pf6N2E2_6080 at 6900.117 kb on - strand, within Pf6N2E2_6080 at 6900.117 kb on - strand, within Pf6N2E2_6080 at 6900.117 kb on - strand, within Pf6N2E2_6080 at 6900.117 kb on - strand, within Pf6N2E2_6080 at 6900.171 kb on - strand, within Pf6N2E2_6080 at 6900.171 kb on - strand, within Pf6N2E2_6080 at 6900.243 kb on + strand, within Pf6N2E2_6080 at 6900.455 kb on + strand, within Pf6N2E2_6080 at 6900.455 kb on + strand, within Pf6N2E2_6080 at 6900.455 kb on + strand, within Pf6N2E2_6080 at 6900.749 kb on - strand at 6901.000 kb on + strand, within Pf6N2E2_6081 at 6901.129 kb on + strand, within Pf6N2E2_6081 at 6901.129 kb on + strand, within Pf6N2E2_6081 at 6901.130 kb on - strand, within Pf6N2E2_6081 at 6901.271 kb on + strand, within Pf6N2E2_6081 at 6901.396 kb on - strand at 6901.436 kb on + strand at 6901.440 kb on + strand at 6901.467 kb on + strand, within Pf6N2E2_6082 at 6901.467 kb on + strand, within Pf6N2E2_6082 at 6901.544 kb on + strand, within Pf6N2E2_6082 at 6901.544 kb on + strand, within Pf6N2E2_6082 at 6901.544 kb on + strand, within Pf6N2E2_6082 at 6901.544 kb on + strand, within Pf6N2E2_6082 at 6901.687 kb on + strand, within Pf6N2E2_6082 at 6901.726 kb on + strand at 6901.726 kb on + strand at 6901.726 kb on + strand at 6901.726 kb on + strand at 6901.727 kb on - strand at 6901.727 kb on - strand at 6901.727 kb on - strand at 6901.727 kb on - strand at 6901.728 kb on + strand at 6901.728 kb on + strand at 6901.729 kb on - strand at 6901.755 kb on - strand at 6901.755 kb on - strand at 6901.755 kb on - strand at 6901.755 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 6,899,040 - Pf6N2E2_6078 0.80 -0.2 6,899,078 + Pf6N2E2_6078 0.82 -1.8 6,899,147 + Pf6N2E2_6078 0.86 -2.0 6,899,148 - Pf6N2E2_6078 0.86 +0.2 6,899,148 - Pf6N2E2_6078 0.86 -0.4 6,899,148 - Pf6N2E2_6078 0.86 -0.1 6,899,148 - Pf6N2E2_6078 0.86 -1.3 6,899,410 + -0.2 6,899,410 + +0.5 6,899,580 + Pf6N2E2_6079 0.28 -0.4 6,899,580 + Pf6N2E2_6079 0.28 +0.6 6,899,580 + Pf6N2E2_6079 0.28 +1.0 6,899,580 + Pf6N2E2_6079 0.28 +0.3 6,899,581 - Pf6N2E2_6079 0.28 +0.3 6,899,581 - Pf6N2E2_6079 0.28 -0.2 6,899,581 - Pf6N2E2_6079 0.28 -0.3 6,899,581 - Pf6N2E2_6079 0.28 -0.9 6,899,581 - Pf6N2E2_6079 0.28 -0.2 6,899,581 - Pf6N2E2_6079 0.28 -1.6 6,899,581 - Pf6N2E2_6079 0.28 +0.7 6,899,746 + Pf6N2E2_6079 0.56 -0.1 6,899,746 + Pf6N2E2_6079 0.56 +0.3 6,899,746 + Pf6N2E2_6079 0.56 +1.0 6,899,746 + Pf6N2E2_6079 0.56 +0.2 6,899,747 - Pf6N2E2_6079 0.56 +1.9 6,899,747 - Pf6N2E2_6079 0.56 +0.2 6,899,747 - Pf6N2E2_6079 0.56 -2.4 6,899,747 - Pf6N2E2_6079 0.56 +3.7 6,899,823 + Pf6N2E2_6079 0.69 -0.1 6,899,823 + Pf6N2E2_6079 0.69 +0.1 6,899,824 - Pf6N2E2_6079 0.69 +0.2 6,899,888 + Pf6N2E2_6079 0.80 +0.3 6,899,958 + -2.2 6,899,985 + +0.9 6,900,041 + -0.1 6,900,042 - +0.3 6,900,110 + -0.5 6,900,110 + -1.2 6,900,110 + +0.2 6,900,116 + Pf6N2E2_6080 0.10 +0.6 6,900,117 - Pf6N2E2_6080 0.11 -0.2 6,900,117 - Pf6N2E2_6080 0.11 +0.8 6,900,117 - Pf6N2E2_6080 0.11 -1.2 6,900,117 - Pf6N2E2_6080 0.11 +1.1 6,900,171 - Pf6N2E2_6080 0.18 -0.1 6,900,171 - Pf6N2E2_6080 0.18 +3.3 6,900,243 + Pf6N2E2_6080 0.28 +1.6 6,900,455 + Pf6N2E2_6080 0.57 +1.2 6,900,455 + Pf6N2E2_6080 0.57 +1.3 6,900,455 + Pf6N2E2_6080 0.57 +1.7 6,900,749 - +0.0 6,901,000 + Pf6N2E2_6081 0.25 -0.7 6,901,129 + Pf6N2E2_6081 0.47 +0.9 6,901,129 + Pf6N2E2_6081 0.47 +0.2 6,901,130 - Pf6N2E2_6081 0.48 -0.7 6,901,271 + Pf6N2E2_6081 0.72 -0.5 6,901,396 - +0.0 6,901,436 + -0.4 6,901,440 + +0.4 6,901,467 + Pf6N2E2_6082 0.11 +1.0 6,901,467 + Pf6N2E2_6082 0.11 +1.9 6,901,544 + Pf6N2E2_6082 0.39 +0.9 6,901,544 + Pf6N2E2_6082 0.39 +0.9 6,901,544 + Pf6N2E2_6082 0.39 -0.5 6,901,544 + Pf6N2E2_6082 0.39 -0.7 6,901,687 + Pf6N2E2_6082 0.89 +1.0 6,901,726 + -0.9 6,901,726 + +1.3 6,901,726 + +0.3 6,901,726 + -1.4 6,901,727 - +0.5 6,901,727 - +0.5 6,901,727 - -2.6 6,901,727 - -1.6 6,901,728 + +2.3 6,901,728 + +1.5 6,901,729 - -0.2 6,901,755 - -2.2 6,901,755 - -0.2 6,901,755 - -1.0 6,901,755 - -0.7
Or see this region's nucleotide sequence