Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6080

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6078 and Pf6N2E2_6079 are separated by 9 nucleotidesPf6N2E2_6079 and Pf6N2E2_6080 are separated by 32 nucleotidesPf6N2E2_6080 and Pf6N2E2_6081 are separated by 90 nucleotidesPf6N2E2_6081 and Pf6N2E2_6082 are separated by 6 nucleotides Pf6N2E2_6078 - Xaa-Pro aminopeptidase (EC 3.4.11.9), at 6,897,599 to 6,899,407 _6078 Pf6N2E2_6079 - 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent, at 6,899,417 to 6,900,007 _6079 Pf6N2E2_6080 - Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein, at 6,900,040 to 6,900,768 _6080 Pf6N2E2_6081 - Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent, at 6,900,859 to 6,901,428 _6081 Pf6N2E2_6082 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 6,901,435 to 6,901,716 _6082 Position (kb) 6900 6901Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6899.040 kb on - strand, within Pf6N2E2_6078at 6899.078 kb on + strand, within Pf6N2E2_6078at 6899.147 kb on + strand, within Pf6N2E2_6078at 6899.148 kb on - strand, within Pf6N2E2_6078at 6899.148 kb on - strand, within Pf6N2E2_6078at 6899.148 kb on - strand, within Pf6N2E2_6078at 6899.148 kb on - strand, within Pf6N2E2_6078at 6899.410 kb on + strandat 6899.410 kb on + strandat 6899.580 kb on + strand, within Pf6N2E2_6079at 6899.580 kb on + strand, within Pf6N2E2_6079at 6899.580 kb on + strand, within Pf6N2E2_6079at 6899.580 kb on + strand, within Pf6N2E2_6079at 6899.581 kb on - strand, within Pf6N2E2_6079at 6899.581 kb on - strand, within Pf6N2E2_6079at 6899.581 kb on - strand, within Pf6N2E2_6079at 6899.581 kb on - strand, within Pf6N2E2_6079at 6899.581 kb on - strand, within Pf6N2E2_6079at 6899.581 kb on - strand, within Pf6N2E2_6079at 6899.581 kb on - strand, within Pf6N2E2_6079at 6899.746 kb on + strand, within Pf6N2E2_6079at 6899.746 kb on + strand, within Pf6N2E2_6079at 6899.746 kb on + strand, within Pf6N2E2_6079at 6899.746 kb on + strand, within Pf6N2E2_6079at 6899.747 kb on - strand, within Pf6N2E2_6079at 6899.747 kb on - strand, within Pf6N2E2_6079at 6899.747 kb on - strand, within Pf6N2E2_6079at 6899.747 kb on - strand, within Pf6N2E2_6079at 6899.823 kb on + strand, within Pf6N2E2_6079at 6899.823 kb on + strand, within Pf6N2E2_6079at 6899.824 kb on - strand, within Pf6N2E2_6079at 6899.888 kb on + strand, within Pf6N2E2_6079at 6899.958 kb on + strandat 6899.985 kb on + strandat 6900.041 kb on + strandat 6900.042 kb on - strandat 6900.110 kb on + strandat 6900.110 kb on + strandat 6900.110 kb on + strandat 6900.116 kb on + strand, within Pf6N2E2_6080at 6900.117 kb on - strand, within Pf6N2E2_6080at 6900.117 kb on - strand, within Pf6N2E2_6080at 6900.117 kb on - strand, within Pf6N2E2_6080at 6900.117 kb on - strand, within Pf6N2E2_6080at 6900.171 kb on - strand, within Pf6N2E2_6080at 6900.171 kb on - strand, within Pf6N2E2_6080at 6900.243 kb on + strand, within Pf6N2E2_6080at 6900.455 kb on + strand, within Pf6N2E2_6080at 6900.455 kb on + strand, within Pf6N2E2_6080at 6900.455 kb on + strand, within Pf6N2E2_6080at 6900.749 kb on - strandat 6901.000 kb on + strand, within Pf6N2E2_6081at 6901.129 kb on + strand, within Pf6N2E2_6081at 6901.129 kb on + strand, within Pf6N2E2_6081at 6901.130 kb on - strand, within Pf6N2E2_6081at 6901.271 kb on + strand, within Pf6N2E2_6081at 6901.396 kb on - strandat 6901.436 kb on + strandat 6901.440 kb on + strandat 6901.467 kb on + strand, within Pf6N2E2_6082at 6901.467 kb on + strand, within Pf6N2E2_6082at 6901.544 kb on + strand, within Pf6N2E2_6082at 6901.544 kb on + strand, within Pf6N2E2_6082at 6901.544 kb on + strand, within Pf6N2E2_6082at 6901.544 kb on + strand, within Pf6N2E2_6082at 6901.687 kb on + strand, within Pf6N2E2_6082at 6901.726 kb on + strandat 6901.726 kb on + strandat 6901.726 kb on + strandat 6901.726 kb on + strandat 6901.727 kb on - strandat 6901.727 kb on - strandat 6901.727 kb on - strandat 6901.727 kb on - strandat 6901.728 kb on + strandat 6901.728 kb on + strandat 6901.729 kb on - strandat 6901.755 kb on - strandat 6901.755 kb on - strandat 6901.755 kb on - strandat 6901.755 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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6,899,040 - Pf6N2E2_6078 0.80 -0.2
6,899,078 + Pf6N2E2_6078 0.82 -1.8
6,899,147 + Pf6N2E2_6078 0.86 -2.0
6,899,148 - Pf6N2E2_6078 0.86 +0.2
6,899,148 - Pf6N2E2_6078 0.86 -0.4
6,899,148 - Pf6N2E2_6078 0.86 -0.1
6,899,148 - Pf6N2E2_6078 0.86 -1.3
6,899,410 + -0.2
6,899,410 + +0.5
6,899,580 + Pf6N2E2_6079 0.28 -0.4
6,899,580 + Pf6N2E2_6079 0.28 +0.6
6,899,580 + Pf6N2E2_6079 0.28 +1.0
6,899,580 + Pf6N2E2_6079 0.28 +0.3
6,899,581 - Pf6N2E2_6079 0.28 +0.3
6,899,581 - Pf6N2E2_6079 0.28 -0.2
6,899,581 - Pf6N2E2_6079 0.28 -0.3
6,899,581 - Pf6N2E2_6079 0.28 -0.9
6,899,581 - Pf6N2E2_6079 0.28 -0.2
6,899,581 - Pf6N2E2_6079 0.28 -1.6
6,899,581 - Pf6N2E2_6079 0.28 +0.7
6,899,746 + Pf6N2E2_6079 0.56 -0.1
6,899,746 + Pf6N2E2_6079 0.56 +0.3
6,899,746 + Pf6N2E2_6079 0.56 +1.0
6,899,746 + Pf6N2E2_6079 0.56 +0.2
6,899,747 - Pf6N2E2_6079 0.56 +1.9
6,899,747 - Pf6N2E2_6079 0.56 +0.2
6,899,747 - Pf6N2E2_6079 0.56 -2.4
6,899,747 - Pf6N2E2_6079 0.56 +3.7
6,899,823 + Pf6N2E2_6079 0.69 -0.1
6,899,823 + Pf6N2E2_6079 0.69 +0.1
6,899,824 - Pf6N2E2_6079 0.69 +0.2
6,899,888 + Pf6N2E2_6079 0.80 +0.3
6,899,958 + -2.2
6,899,985 + +0.9
6,900,041 + -0.1
6,900,042 - +0.3
6,900,110 + -0.5
6,900,110 + -1.2
6,900,110 + +0.2
6,900,116 + Pf6N2E2_6080 0.10 +0.6
6,900,117 - Pf6N2E2_6080 0.11 -0.2
6,900,117 - Pf6N2E2_6080 0.11 +0.8
6,900,117 - Pf6N2E2_6080 0.11 -1.2
6,900,117 - Pf6N2E2_6080 0.11 +1.1
6,900,171 - Pf6N2E2_6080 0.18 -0.1
6,900,171 - Pf6N2E2_6080 0.18 +3.3
6,900,243 + Pf6N2E2_6080 0.28 +1.6
6,900,455 + Pf6N2E2_6080 0.57 +1.2
6,900,455 + Pf6N2E2_6080 0.57 +1.3
6,900,455 + Pf6N2E2_6080 0.57 +1.7
6,900,749 - +0.0
6,901,000 + Pf6N2E2_6081 0.25 -0.7
6,901,129 + Pf6N2E2_6081 0.47 +0.9
6,901,129 + Pf6N2E2_6081 0.47 +0.2
6,901,130 - Pf6N2E2_6081 0.48 -0.7
6,901,271 + Pf6N2E2_6081 0.72 -0.5
6,901,396 - +0.0
6,901,436 + -0.4
6,901,440 + +0.4
6,901,467 + Pf6N2E2_6082 0.11 +1.0
6,901,467 + Pf6N2E2_6082 0.11 +1.9
6,901,544 + Pf6N2E2_6082 0.39 +0.9
6,901,544 + Pf6N2E2_6082 0.39 +0.9
6,901,544 + Pf6N2E2_6082 0.39 -0.5
6,901,544 + Pf6N2E2_6082 0.39 -0.7
6,901,687 + Pf6N2E2_6082 0.89 +1.0
6,901,726 + -0.9
6,901,726 + +1.3
6,901,726 + +0.3
6,901,726 + -1.4
6,901,727 - +0.5
6,901,727 - +0.5
6,901,727 - -2.6
6,901,727 - -1.6
6,901,728 + +2.3
6,901,728 + +1.5
6,901,729 - -0.2
6,901,755 - -2.2
6,901,755 - -0.2
6,901,755 - -1.0
6,901,755 - -0.7

Or see this region's nucleotide sequence