Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5815

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5813 and Pf6N2E2_5814 are separated by 85 nucleotidesPf6N2E2_5814 and Pf6N2E2_5815 are separated by 8 nucleotidesPf6N2E2_5815 and Pf6N2E2_5816 are separated by 77 nucleotidesPf6N2E2_5816 and Pf6N2E2_5817 are separated by 73 nucleotides Pf6N2E2_5813 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 6,632,530 to 6,633,696 _5813 Pf6N2E2_5814 - Glutaredoxin, at 6,633,782 to 6,634,249 _5814 Pf6N2E2_5815 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 6,634,258 to 6,634,803 _5815 Pf6N2E2_5816 - Smr domain protein, at 6,634,881 to 6,635,438 _5816 Pf6N2E2_5817 - FIG00956876: hypothetical protein, at 6,635,512 to 6,635,832 _5817 Position (kb) 6634 6635Strain fitness (log2 ratio) -1 0 1 2at 6633.452 kb on + strand, within Pf6N2E2_5813at 6633.452 kb on + strand, within Pf6N2E2_5813at 6633.452 kb on + strand, within Pf6N2E2_5813at 6633.452 kb on + strand, within Pf6N2E2_5813at 6633.452 kb on + strand, within Pf6N2E2_5813at 6633.452 kb on + strand, within Pf6N2E2_5813at 6633.453 kb on - strand, within Pf6N2E2_5813at 6633.453 kb on - strand, within Pf6N2E2_5813at 6633.453 kb on - strand, within Pf6N2E2_5813at 6633.453 kb on - strand, within Pf6N2E2_5813at 6633.453 kb on - strand, within Pf6N2E2_5813at 6633.453 kb on - strand, within Pf6N2E2_5813at 6633.453 kb on - strand, within Pf6N2E2_5813at 6633.810 kb on + strandat 6633.810 kb on + strandat 6633.811 kb on - strandat 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.834 kb on + strand, within Pf6N2E2_5814at 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.835 kb on - strandat 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.835 kb on - strand, within Pf6N2E2_5814at 6633.956 kb on + strand, within Pf6N2E2_5814at 6634.017 kb on + strand, within Pf6N2E2_5814at 6634.157 kb on - strand, within Pf6N2E2_5814at 6634.160 kb on - strand, within Pf6N2E2_5814at 6634.160 kb on - strand, within Pf6N2E2_5814at 6634.160 kb on - strand, within Pf6N2E2_5814at 6634.195 kb on + strand, within Pf6N2E2_5814at 6634.196 kb on - strand, within Pf6N2E2_5814at 6634.259 kb on + strandat 6634.260 kb on - strandat 6634.882 kb on + strandat 6634.883 kb on - strandat 6634.883 kb on - strandat 6635.031 kb on - strand, within Pf6N2E2_5816at 6635.031 kb on - strand, within Pf6N2E2_5816

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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6,633,452 + Pf6N2E2_5813 0.79 +0.3
6,633,452 + Pf6N2E2_5813 0.79 -0.2
6,633,452 + Pf6N2E2_5813 0.79 +1.1
6,633,452 + Pf6N2E2_5813 0.79 -0.4
6,633,452 + Pf6N2E2_5813 0.79 -1.4
6,633,452 + Pf6N2E2_5813 0.79 -0.7
6,633,453 - Pf6N2E2_5813 0.79 -0.9
6,633,453 - Pf6N2E2_5813 0.79 +0.7
6,633,453 - Pf6N2E2_5813 0.79 -0.7
6,633,453 - Pf6N2E2_5813 0.79 -0.4
6,633,453 - Pf6N2E2_5813 0.79 -1.7
6,633,453 - Pf6N2E2_5813 0.79 +0.2
6,633,453 - Pf6N2E2_5813 0.79 -0.9
6,633,810 + +0.2
6,633,810 + +0.8
6,633,811 - -0.2
6,633,834 + Pf6N2E2_5814 0.11 +2.0
6,633,834 + Pf6N2E2_5814 0.11 +0.6
6,633,834 + Pf6N2E2_5814 0.11 -0.6
6,633,834 + Pf6N2E2_5814 0.11 -1.0
6,633,834 + Pf6N2E2_5814 0.11 +0.3
6,633,834 + Pf6N2E2_5814 0.11 +1.8
6,633,834 + Pf6N2E2_5814 0.11 +0.0
6,633,834 + Pf6N2E2_5814 0.11 +1.1
6,633,834 + Pf6N2E2_5814 0.11 +0.5
6,633,834 + Pf6N2E2_5814 0.11 +0.3
6,633,834 + Pf6N2E2_5814 0.11 +0.4
6,633,834 + Pf6N2E2_5814 0.11 -0.1
6,633,834 + Pf6N2E2_5814 0.11 +1.1
6,633,834 + Pf6N2E2_5814 0.11 +0.6
6,633,834 + Pf6N2E2_5814 0.11 -0.3
6,633,834 + Pf6N2E2_5814 0.11 +2.2
6,633,834 + Pf6N2E2_5814 0.11 -0.1
6,633,834 + Pf6N2E2_5814 0.11 +0.5
6,633,834 + Pf6N2E2_5814 0.11 -0.8
6,633,835 - Pf6N2E2_5814 0.11 +0.4
6,633,835 - Pf6N2E2_5814 0.11 -0.9
6,633,835 - Pf6N2E2_5814 0.11 -0.8
6,633,835 - Pf6N2E2_5814 0.11 +1.0
6,633,835 - +0.4
6,633,835 - Pf6N2E2_5814 0.11 -0.9
6,633,835 - Pf6N2E2_5814 0.11 -0.8
6,633,835 - Pf6N2E2_5814 0.11 +1.5
6,633,835 - Pf6N2E2_5814 0.11 -0.3
6,633,835 - Pf6N2E2_5814 0.11 -0.0
6,633,835 - Pf6N2E2_5814 0.11 -0.4
6,633,956 + Pf6N2E2_5814 0.37 -0.5
6,634,017 + Pf6N2E2_5814 0.50 -1.5
6,634,157 - Pf6N2E2_5814 0.80 -0.6
6,634,160 - Pf6N2E2_5814 0.81 +0.1
6,634,160 - Pf6N2E2_5814 0.81 +0.8
6,634,160 - Pf6N2E2_5814 0.81 +0.1
6,634,195 + Pf6N2E2_5814 0.88 -0.4
6,634,196 - Pf6N2E2_5814 0.88 +0.3
6,634,259 + -0.4
6,634,260 - +0.2
6,634,882 + -0.1
6,634,883 - -0.5
6,634,883 - +1.5
6,635,031 - Pf6N2E2_5816 0.27 -0.8
6,635,031 - Pf6N2E2_5816 0.27 +0.4

Or see this region's nucleotide sequence