Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3267 and Pf6N2E2_3268 are separated by 76 nucleotides Pf6N2E2_3268 and Pf6N2E2_3269 are separated by 54 nucleotides Pf6N2E2_3269 and Pf6N2E2_3270 are separated by 2 nucleotides
Pf6N2E2_3267 - RNA polymerase sigma-54 factor RpoN, at 3,773,302 to 3,774,771
_3267
Pf6N2E2_3268 - Ribosome hibernation protein YhbH, at 3,774,848 to 3,775,156
_3268
Pf6N2E2_3269 - PTS IIA-like nitrogen-regulatory protein PtsN, at 3,775,211 to 3,775,633
_3269
Pf6N2E2_3270 - Hypothetical ATP-binding protein UPF0042, contains P-loop, at 3,775,636 to 3,776,493
_3270
Position (kb) 3774
3775
3776 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3774.756 kb on + strand at 3774.769 kb on + strand at 3774.769 kb on + strand at 3774.769 kb on + strand at 3774.847 kb on + strand at 3774.847 kb on + strand at 3774.847 kb on + strand at 3774.847 kb on + strand at 3774.902 kb on + strand, within Pf6N2E2_3268 at 3774.902 kb on + strand, within Pf6N2E2_3268 at 3774.902 kb on + strand, within Pf6N2E2_3268 at 3774.902 kb on + strand, within Pf6N2E2_3268 at 3774.902 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.058 kb on + strand, within Pf6N2E2_3268 at 3775.631 kb on + strand at 3775.714 kb on + strand at 3775.714 kb on + strand at 3775.714 kb on + strand at 3775.714 kb on + strand at 3775.714 kb on + strand at 3775.715 kb on - strand at 3775.715 kb on - strand at 3775.822 kb on - strand, within Pf6N2E2_3270 at 3775.822 kb on - strand, within Pf6N2E2_3270 at 3775.881 kb on + strand, within Pf6N2E2_3270 at 3775.900 kb on + strand, within Pf6N2E2_3270 at 3775.901 kb on - strand, within Pf6N2E2_3270 at 3776.016 kb on - strand, within Pf6N2E2_3270 at 3776.016 kb on - strand, within Pf6N2E2_3270 at 3776.055 kb on + strand, within Pf6N2E2_3270 at 3776.055 kb on + strand, within Pf6N2E2_3270 at 3776.056 kb on - strand, within Pf6N2E2_3270
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 3,774,756 + +0.2 3,774,769 + +0.1 3,774,769 + +1.5 3,774,769 + +0.6 3,774,847 + -0.7 3,774,847 + -0.6 3,774,847 + +1.0 3,774,847 + +1.1 3,774,902 + Pf6N2E2_3268 0.17 +0.9 3,774,902 + Pf6N2E2_3268 0.17 +1.4 3,774,902 + Pf6N2E2_3268 0.17 +0.5 3,774,902 + Pf6N2E2_3268 0.17 +1.3 3,774,902 + Pf6N2E2_3268 0.17 -1.3 3,775,058 + Pf6N2E2_3268 0.68 -0.8 3,775,058 + Pf6N2E2_3268 0.68 -0.0 3,775,058 + Pf6N2E2_3268 0.68 -0.1 3,775,058 + Pf6N2E2_3268 0.68 +0.4 3,775,058 + Pf6N2E2_3268 0.68 +1.2 3,775,058 + Pf6N2E2_3268 0.68 +0.6 3,775,058 + Pf6N2E2_3268 0.68 +1.2 3,775,058 + Pf6N2E2_3268 0.68 +1.5 3,775,058 + Pf6N2E2_3268 0.68 +0.2 3,775,058 + Pf6N2E2_3268 0.68 +0.8 3,775,058 + Pf6N2E2_3268 0.68 +1.1 3,775,058 + Pf6N2E2_3268 0.68 +0.7 3,775,058 + Pf6N2E2_3268 0.68 -0.1 3,775,058 + Pf6N2E2_3268 0.68 +0.2 3,775,058 + Pf6N2E2_3268 0.68 +0.1 3,775,058 + Pf6N2E2_3268 0.68 +0.9 3,775,058 + Pf6N2E2_3268 0.68 -1.0 3,775,058 + Pf6N2E2_3268 0.68 -0.3 3,775,058 + Pf6N2E2_3268 0.68 +1.1 3,775,631 + +1.6 3,775,714 + +0.1 3,775,714 + -0.1 3,775,714 + +0.7 3,775,714 + +1.3 3,775,714 + -0.3 3,775,715 - -1.4 3,775,715 - +0.2 3,775,822 - Pf6N2E2_3270 0.22 +1.4 3,775,822 - Pf6N2E2_3270 0.22 +0.3 3,775,881 + Pf6N2E2_3270 0.29 +2.1 3,775,900 + Pf6N2E2_3270 0.31 +0.7 3,775,901 - Pf6N2E2_3270 0.31 +0.7 3,776,016 - Pf6N2E2_3270 0.44 +0.6 3,776,016 - Pf6N2E2_3270 0.44 -0.3 3,776,055 + Pf6N2E2_3270 0.49 -2.0 3,776,055 + Pf6N2E2_3270 0.49 +0.7 3,776,056 - Pf6N2E2_3270 0.49 -0.3
Or see this region's nucleotide sequence