Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_846 and Pf6N2E2_847 are separated by 52 nucleotides Pf6N2E2_847 and Pf6N2E2_848 overlap by 8 nucleotides Pf6N2E2_848 and Pf6N2E2_849 overlap by 19 nucleotides
Pf6N2E2_846 - Universal stress protein family 5, at 991,394 to 992,284
_846
Pf6N2E2_847 - Phosphoribosyl transferase domain protein, at 992,337 to 993,041
_847
Pf6N2E2_848 - hypothetical protein, at 993,034 to 993,729
_848
Pf6N2E2_849 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 993,711 to 995,078
_849
Position (kb) 993
994 Strain fitness (log2 ratio) -2
-1
0
1
2 at 992.173 kb on + strand, within Pf6N2E2_846 at 992.173 kb on + strand, within Pf6N2E2_846 at 992.173 kb on + strand, within Pf6N2E2_846 at 992.173 kb on + strand, within Pf6N2E2_846 at 992.174 kb on - strand, within Pf6N2E2_846 at 992.174 kb on - strand, within Pf6N2E2_846 at 992.174 kb on - strand, within Pf6N2E2_846 at 992.231 kb on - strand at 992.245 kb on + strand at 992.245 kb on + strand at 992.246 kb on - strand at 992.259 kb on + strand at 992.259 kb on + strand at 992.282 kb on + strand at 992.282 kb on + strand at 992.282 kb on + strand at 992.282 kb on + strand at 992.587 kb on + strand, within Pf6N2E2_847 at 992.588 kb on - strand, within Pf6N2E2_847 at 992.798 kb on - strand, within Pf6N2E2_847 at 992.934 kb on + strand, within Pf6N2E2_847 at 992.934 kb on + strand, within Pf6N2E2_847 at 992.935 kb on - strand, within Pf6N2E2_847 at 993.172 kb on + strand, within Pf6N2E2_848 at 993.172 kb on + strand, within Pf6N2E2_848 at 993.173 kb on - strand, within Pf6N2E2_848 at 993.173 kb on - strand, within Pf6N2E2_848 at 993.670 kb on + strand at 993.671 kb on - strand at 993.671 kb on - strand at 993.671 kb on - strand at 993.705 kb on - strand at 993.705 kb on - strand at 993.705 kb on - strand at 993.727 kb on + strand at 993.728 kb on - strand at 993.874 kb on + strand, within Pf6N2E2_849 at 993.874 kb on + strand, within Pf6N2E2_849 at 994.115 kb on - strand, within Pf6N2E2_849 at 994.318 kb on + strand, within Pf6N2E2_849 at 994.319 kb on - strand, within Pf6N2E2_849 at 994.321 kb on + strand, within Pf6N2E2_849 at 994.322 kb on - strand, within Pf6N2E2_849 at 994.322 kb on - strand, within Pf6N2E2_849 at 994.322 kb on - strand, within Pf6N2E2_849 at 994.322 kb on - strand, within Pf6N2E2_849 at 994.483 kb on + strand, within Pf6N2E2_849 at 994.484 kb on - strand, within Pf6N2E2_849 at 994.484 kb on - strand, within Pf6N2E2_849 at 994.484 kb on - strand, within Pf6N2E2_849 at 994.484 kb on - strand, within Pf6N2E2_849 at 994.523 kb on - strand, within Pf6N2E2_849 at 994.570 kb on + strand, within Pf6N2E2_849 at 994.570 kb on + strand, within Pf6N2E2_849 at 994.607 kb on - strand, within Pf6N2E2_849
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 992,173 + Pf6N2E2_846 0.87 -0.2 992,173 + Pf6N2E2_846 0.87 +0.5 992,173 + Pf6N2E2_846 0.87 -0.6 992,173 + Pf6N2E2_846 0.87 -0.1 992,174 - Pf6N2E2_846 0.88 +1.2 992,174 - Pf6N2E2_846 0.88 -2.2 992,174 - Pf6N2E2_846 0.88 +0.4 992,231 - -1.2 992,245 + +1.9 992,245 + -0.9 992,246 - +1.3 992,259 + -0.2 992,259 + +0.3 992,282 + -0.6 992,282 + -0.6 992,282 + -1.4 992,282 + -0.5 992,587 + Pf6N2E2_847 0.35 -0.5 992,588 - Pf6N2E2_847 0.36 -0.5 992,798 - Pf6N2E2_847 0.65 -0.4 992,934 + Pf6N2E2_847 0.85 -0.5 992,934 + Pf6N2E2_847 0.85 +0.9 992,935 - Pf6N2E2_847 0.85 +1.6 993,172 + Pf6N2E2_848 0.20 +0.3 993,172 + Pf6N2E2_848 0.20 +1.4 993,173 - Pf6N2E2_848 0.20 +0.9 993,173 - Pf6N2E2_848 0.20 +1.0 993,670 + -0.1 993,671 - -0.4 993,671 - +0.3 993,671 - -2.2 993,705 - -0.1 993,705 - -0.0 993,705 - -0.5 993,727 + -0.2 993,728 - -0.5 993,874 + Pf6N2E2_849 0.12 -0.6 993,874 + Pf6N2E2_849 0.12 +0.9 994,115 - Pf6N2E2_849 0.30 +2.1 994,318 + Pf6N2E2_849 0.44 +0.3 994,319 - Pf6N2E2_849 0.44 -0.1 994,321 + Pf6N2E2_849 0.45 -0.8 994,322 - Pf6N2E2_849 0.45 +0.3 994,322 - Pf6N2E2_849 0.45 -0.0 994,322 - Pf6N2E2_849 0.45 +0.4 994,322 - Pf6N2E2_849 0.45 -1.2 994,483 + Pf6N2E2_849 0.56 -0.4 994,484 - Pf6N2E2_849 0.57 -1.7 994,484 - Pf6N2E2_849 0.57 +0.4 994,484 - Pf6N2E2_849 0.57 +0.2 994,484 - Pf6N2E2_849 0.57 -0.2 994,523 - Pf6N2E2_849 0.59 +0.8 994,570 + Pf6N2E2_849 0.63 -0.6 994,570 + Pf6N2E2_849 0.63 +0.8 994,607 - Pf6N2E2_849 0.65 +1.5
Or see this region's nucleotide sequence