Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6093 and Pf6N2E2_6094 are separated by 174 nucleotides
Pf6N2E2_6093 - hypothetical protein, at 6,916,870 to 6,917,235
_6093
Pf6N2E2_6094 - Glucoamylase (EC 3.2.1.3), at 6,917,410 to 6,918,999
_6094
Position (kb)
6917
6918
6919 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6916.466 kb on + strand at 6916.477 kb on - strand at 6916.523 kb on + strand at 6916.523 kb on + strand at 6916.524 kb on - strand at 6916.524 kb on - strand at 6916.542 kb on + strand at 6916.573 kb on + strand at 6916.694 kb on + strand at 6916.694 kb on + strand at 6916.694 kb on + strand at 6916.733 kb on + strand at 6916.734 kb on - strand at 6916.802 kb on + strand at 6916.802 kb on + strand at 6916.803 kb on - strand at 6916.867 kb on - strand at 6916.867 kb on - strand at 6916.918 kb on + strand, within Pf6N2E2_6093 at 6916.918 kb on + strand, within Pf6N2E2_6093 at 6916.919 kb on - strand, within Pf6N2E2_6093 at 6916.919 kb on - strand, within Pf6N2E2_6093 at 6917.221 kb on + strand at 6917.544 kb on - strand at 6917.897 kb on + strand, within Pf6N2E2_6094 at 6917.898 kb on - strand, within Pf6N2E2_6094 at 6917.898 kb on - strand, within Pf6N2E2_6094 at 6917.898 kb on - strand, within Pf6N2E2_6094 at 6918.042 kb on + strand, within Pf6N2E2_6094 at 6918.132 kb on - strand, within Pf6N2E2_6094 at 6918.146 kb on + strand, within Pf6N2E2_6094 at 6918.356 kb on + strand, within Pf6N2E2_6094 at 6918.356 kb on + strand, within Pf6N2E2_6094 at 6918.398 kb on + strand, within Pf6N2E2_6094 at 6918.437 kb on + strand, within Pf6N2E2_6094 at 6918.575 kb on + strand, within Pf6N2E2_6094 at 6918.760 kb on + strand, within Pf6N2E2_6094 at 6918.760 kb on + strand, within Pf6N2E2_6094 at 6918.760 kb on + strand, within Pf6N2E2_6094 at 6918.840 kb on - strand, within Pf6N2E2_6094 at 6918.840 kb on - strand, within Pf6N2E2_6094 at 6918.917 kb on - strand at 6918.917 kb on - strand at 6919.016 kb on + strand at 6919.016 kb on + strand at 6919.016 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 6,916,466 + -0.5 6,916,477 - +0.5 6,916,523 + +0.2 6,916,523 + -0.8 6,916,524 - -0.6 6,916,524 - +0.4 6,916,542 + -0.8 6,916,573 + -0.7 6,916,694 + -0.5 6,916,694 + +1.2 6,916,694 + +0.3 6,916,733 + +1.0 6,916,734 - +0.2 6,916,802 + -1.8 6,916,802 + -1.0 6,916,803 - +0.0 6,916,867 - -0.5 6,916,867 - +0.8 6,916,918 + Pf6N2E2_6093 0.13 +0.2 6,916,918 + Pf6N2E2_6093 0.13 +0.8 6,916,919 - Pf6N2E2_6093 0.13 -0.1 6,916,919 - Pf6N2E2_6093 0.13 +0.8 6,917,221 + -0.1 6,917,544 - -1.0 6,917,897 + Pf6N2E2_6094 0.31 +0.5 6,917,898 - Pf6N2E2_6094 0.31 -0.2 6,917,898 - Pf6N2E2_6094 0.31 +0.6 6,917,898 - Pf6N2E2_6094 0.31 +0.3 6,918,042 + Pf6N2E2_6094 0.40 +1.8 6,918,132 - Pf6N2E2_6094 0.45 -0.4 6,918,146 + Pf6N2E2_6094 0.46 -1.1 6,918,356 + Pf6N2E2_6094 0.59 -1.8 6,918,356 + Pf6N2E2_6094 0.59 -0.4 6,918,398 + Pf6N2E2_6094 0.62 -0.9 6,918,437 + Pf6N2E2_6094 0.65 -0.2 6,918,575 + Pf6N2E2_6094 0.73 +0.0 6,918,760 + Pf6N2E2_6094 0.85 -0.1 6,918,760 + Pf6N2E2_6094 0.85 +1.4 6,918,760 + Pf6N2E2_6094 0.85 +0.0 6,918,840 - Pf6N2E2_6094 0.90 +0.7 6,918,840 - Pf6N2E2_6094 0.90 +0.9 6,918,917 - +1.1 6,918,917 - -1.8 6,919,016 + +0.7 6,919,016 + +0.9 6,919,016 + -0.3
Or see this region's nucleotide sequence