Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1529

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1528 and Pf6N2E2_1529 are separated by 42 nucleotidesPf6N2E2_1529 and Pf6N2E2_1530 are separated by 168 nucleotides Pf6N2E2_1528 - Cation transporting ATPase, N-terminal:Haloacid dehalogenase-like hydrolase:Cation transporting ATPase, C-terminal:E1-E2 ATPase- associated region, at 1,786,334 to 1,789,081 _1528 Pf6N2E2_1529 - hypothetical protein, at 1,789,124 to 1,789,609 _1529 Pf6N2E2_1530 - Flagellar regulatory protein FleQ, at 1,789,778 to 1,791,007 _1530 Position (kb) 1789 1790Strain fitness (log2 ratio) -2 -1 0 1 2at 1788.126 kb on + strand, within Pf6N2E2_1528at 1788.205 kb on + strand, within Pf6N2E2_1528at 1788.220 kb on + strand, within Pf6N2E2_1528at 1788.220 kb on + strand, within Pf6N2E2_1528at 1788.220 kb on + strand, within Pf6N2E2_1528at 1788.220 kb on + strand, within Pf6N2E2_1528at 1788.221 kb on - strand, within Pf6N2E2_1528at 1788.221 kb on - strand, within Pf6N2E2_1528at 1788.435 kb on - strand, within Pf6N2E2_1528at 1788.523 kb on + strand, within Pf6N2E2_1528at 1788.523 kb on + strand, within Pf6N2E2_1528at 1788.524 kb on - strand, within Pf6N2E2_1528at 1788.543 kb on + strand, within Pf6N2E2_1528at 1788.682 kb on + strand, within Pf6N2E2_1528at 1788.682 kb on + strand, within Pf6N2E2_1528at 1788.682 kb on + strand, within Pf6N2E2_1528at 1788.683 kb on - strand, within Pf6N2E2_1528at 1788.683 kb on - strand, within Pf6N2E2_1528at 1788.683 kb on - strand, within Pf6N2E2_1528at 1788.720 kb on - strand, within Pf6N2E2_1528at 1788.731 kb on - strand, within Pf6N2E2_1528at 1788.731 kb on - strand, within Pf6N2E2_1528at 1788.731 kb on - strand, within Pf6N2E2_1528at 1788.734 kb on + strand, within Pf6N2E2_1528at 1788.734 kb on + strand, within Pf6N2E2_1528at 1788.734 kb on + strand, within Pf6N2E2_1528at 1788.735 kb on - strand, within Pf6N2E2_1528at 1788.752 kb on + strand, within Pf6N2E2_1528at 1788.753 kb on - strand, within Pf6N2E2_1528at 1788.793 kb on - strand, within Pf6N2E2_1528at 1788.793 kb on - strand, within Pf6N2E2_1528at 1789.523 kb on + strand, within Pf6N2E2_1529at 1789.523 kb on + strand, within Pf6N2E2_1529at 1789.523 kb on + strand, within Pf6N2E2_1529at 1789.523 kb on + strand, within Pf6N2E2_1529at 1789.538 kb on + strand, within Pf6N2E2_1529at 1789.538 kb on + strand, within Pf6N2E2_1529at 1789.538 kb on + strand, within Pf6N2E2_1529at 1789.538 kb on + strand, within Pf6N2E2_1529at 1789.630 kb on + strandat 1789.630 kb on + strandat 1789.660 kb on - strandat 1789.809 kb on + strandat 1789.810 kb on - strandat 1789.812 kb on - strandat 1789.897 kb on + strandat 1790.162 kb on + strand, within Pf6N2E2_1530at 1790.194 kb on - strand, within Pf6N2E2_1530at 1790.194 kb on - strand, within Pf6N2E2_1530at 1790.286 kb on - strand, within Pf6N2E2_1530at 1790.286 kb on - strand, within Pf6N2E2_1530at 1790.304 kb on + strand, within Pf6N2E2_1530at 1790.364 kb on - strand, within Pf6N2E2_1530at 1790.364 kb on - strand, within Pf6N2E2_1530

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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1,788,126 + Pf6N2E2_1528 0.65 +0.4
1,788,205 + Pf6N2E2_1528 0.68 +0.1
1,788,220 + Pf6N2E2_1528 0.69 -0.6
1,788,220 + Pf6N2E2_1528 0.69 -0.1
1,788,220 + Pf6N2E2_1528 0.69 +0.1
1,788,220 + Pf6N2E2_1528 0.69 -0.3
1,788,221 - Pf6N2E2_1528 0.69 +0.2
1,788,221 - Pf6N2E2_1528 0.69 +0.6
1,788,435 - Pf6N2E2_1528 0.76 -0.1
1,788,523 + Pf6N2E2_1528 0.80 -0.1
1,788,523 + Pf6N2E2_1528 0.80 +0.3
1,788,524 - Pf6N2E2_1528 0.80 -0.9
1,788,543 + Pf6N2E2_1528 0.80 +1.7
1,788,682 + Pf6N2E2_1528 0.85 +0.6
1,788,682 + Pf6N2E2_1528 0.85 +0.7
1,788,682 + Pf6N2E2_1528 0.85 +0.9
1,788,683 - Pf6N2E2_1528 0.85 +0.1
1,788,683 - Pf6N2E2_1528 0.85 +1.0
1,788,683 - Pf6N2E2_1528 0.85 -0.4
1,788,720 - Pf6N2E2_1528 0.87 +1.1
1,788,731 - Pf6N2E2_1528 0.87 +0.6
1,788,731 - Pf6N2E2_1528 0.87 -1.5
1,788,731 - Pf6N2E2_1528 0.87 +1.1
1,788,734 + Pf6N2E2_1528 0.87 -0.0
1,788,734 + Pf6N2E2_1528 0.87 +0.3
1,788,734 + Pf6N2E2_1528 0.87 -1.3
1,788,735 - Pf6N2E2_1528 0.87 +1.0
1,788,752 + Pf6N2E2_1528 0.88 -0.7
1,788,753 - Pf6N2E2_1528 0.88 -0.1
1,788,793 - Pf6N2E2_1528 0.89 -0.5
1,788,793 - Pf6N2E2_1528 0.89 -0.5
1,789,523 + Pf6N2E2_1529 0.82 +1.3
1,789,523 + Pf6N2E2_1529 0.82 -0.4
1,789,523 + Pf6N2E2_1529 0.82 -1.0
1,789,523 + Pf6N2E2_1529 0.82 -2.5
1,789,538 + Pf6N2E2_1529 0.85 -1.1
1,789,538 + Pf6N2E2_1529 0.85 -0.7
1,789,538 + Pf6N2E2_1529 0.85 -0.6
1,789,538 + Pf6N2E2_1529 0.85 -0.5
1,789,630 + -0.3
1,789,630 + -0.9
1,789,660 - +0.8
1,789,809 + +0.2
1,789,810 - -0.3
1,789,812 - -2.4
1,789,897 + +0.4
1,790,162 + Pf6N2E2_1530 0.31 +2.2
1,790,194 - Pf6N2E2_1530 0.34 -0.9
1,790,194 - Pf6N2E2_1530 0.34 -1.1
1,790,286 - Pf6N2E2_1530 0.41 -0.3
1,790,286 - Pf6N2E2_1530 0.41 -0.3
1,790,304 + Pf6N2E2_1530 0.43 -1.6
1,790,364 - Pf6N2E2_1530 0.48 +0.7
1,790,364 - Pf6N2E2_1530 0.48 -0.8

Or see this region's nucleotide sequence