Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1528 and Pf6N2E2_1529 are separated by 42 nucleotides Pf6N2E2_1529 and Pf6N2E2_1530 are separated by 168 nucleotides
Pf6N2E2_1528 - Cation transporting ATPase, N-terminal:Haloacid dehalogenase-like hydrolase:Cation transporting ATPase, C-terminal:E1-E2 ATPase- associated region, at 1,786,334 to 1,789,081
_1528
Pf6N2E2_1529 - hypothetical protein, at 1,789,124 to 1,789,609
_1529
Pf6N2E2_1530 - Flagellar regulatory protein FleQ, at 1,789,778 to 1,791,007
_1530
Position (kb)
1789
1790 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1788.126 kb on + strand, within Pf6N2E2_1528 at 1788.205 kb on + strand, within Pf6N2E2_1528 at 1788.220 kb on + strand, within Pf6N2E2_1528 at 1788.220 kb on + strand, within Pf6N2E2_1528 at 1788.220 kb on + strand, within Pf6N2E2_1528 at 1788.220 kb on + strand, within Pf6N2E2_1528 at 1788.221 kb on - strand, within Pf6N2E2_1528 at 1788.221 kb on - strand, within Pf6N2E2_1528 at 1788.435 kb on - strand, within Pf6N2E2_1528 at 1788.523 kb on + strand, within Pf6N2E2_1528 at 1788.523 kb on + strand, within Pf6N2E2_1528 at 1788.524 kb on - strand, within Pf6N2E2_1528 at 1788.543 kb on + strand, within Pf6N2E2_1528 at 1788.682 kb on + strand, within Pf6N2E2_1528 at 1788.682 kb on + strand, within Pf6N2E2_1528 at 1788.682 kb on + strand, within Pf6N2E2_1528 at 1788.683 kb on - strand, within Pf6N2E2_1528 at 1788.683 kb on - strand, within Pf6N2E2_1528 at 1788.683 kb on - strand, within Pf6N2E2_1528 at 1788.720 kb on - strand, within Pf6N2E2_1528 at 1788.731 kb on - strand, within Pf6N2E2_1528 at 1788.731 kb on - strand, within Pf6N2E2_1528 at 1788.731 kb on - strand, within Pf6N2E2_1528 at 1788.734 kb on + strand, within Pf6N2E2_1528 at 1788.734 kb on + strand, within Pf6N2E2_1528 at 1788.734 kb on + strand, within Pf6N2E2_1528 at 1788.735 kb on - strand, within Pf6N2E2_1528 at 1788.752 kb on + strand, within Pf6N2E2_1528 at 1788.753 kb on - strand, within Pf6N2E2_1528 at 1788.793 kb on - strand, within Pf6N2E2_1528 at 1788.793 kb on - strand, within Pf6N2E2_1528 at 1789.523 kb on + strand, within Pf6N2E2_1529 at 1789.523 kb on + strand, within Pf6N2E2_1529 at 1789.523 kb on + strand, within Pf6N2E2_1529 at 1789.523 kb on + strand, within Pf6N2E2_1529 at 1789.538 kb on + strand, within Pf6N2E2_1529 at 1789.538 kb on + strand, within Pf6N2E2_1529 at 1789.538 kb on + strand, within Pf6N2E2_1529 at 1789.538 kb on + strand, within Pf6N2E2_1529 at 1789.630 kb on + strand at 1789.630 kb on + strand at 1789.660 kb on - strand at 1789.809 kb on + strand at 1789.810 kb on - strand at 1789.812 kb on - strand at 1789.897 kb on + strand at 1790.162 kb on + strand, within Pf6N2E2_1530 at 1790.194 kb on - strand, within Pf6N2E2_1530 at 1790.194 kb on - strand, within Pf6N2E2_1530 at 1790.286 kb on - strand, within Pf6N2E2_1530 at 1790.286 kb on - strand, within Pf6N2E2_1530 at 1790.304 kb on + strand, within Pf6N2E2_1530 at 1790.364 kb on - strand, within Pf6N2E2_1530 at 1790.364 kb on - strand, within Pf6N2E2_1530
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 1,788,126 + Pf6N2E2_1528 0.65 +0.4 1,788,205 + Pf6N2E2_1528 0.68 +0.1 1,788,220 + Pf6N2E2_1528 0.69 -0.6 1,788,220 + Pf6N2E2_1528 0.69 -0.1 1,788,220 + Pf6N2E2_1528 0.69 +0.1 1,788,220 + Pf6N2E2_1528 0.69 -0.3 1,788,221 - Pf6N2E2_1528 0.69 +0.2 1,788,221 - Pf6N2E2_1528 0.69 +0.6 1,788,435 - Pf6N2E2_1528 0.76 -0.1 1,788,523 + Pf6N2E2_1528 0.80 -0.1 1,788,523 + Pf6N2E2_1528 0.80 +0.3 1,788,524 - Pf6N2E2_1528 0.80 -0.9 1,788,543 + Pf6N2E2_1528 0.80 +1.7 1,788,682 + Pf6N2E2_1528 0.85 +0.6 1,788,682 + Pf6N2E2_1528 0.85 +0.7 1,788,682 + Pf6N2E2_1528 0.85 +0.9 1,788,683 - Pf6N2E2_1528 0.85 +0.1 1,788,683 - Pf6N2E2_1528 0.85 +1.0 1,788,683 - Pf6N2E2_1528 0.85 -0.4 1,788,720 - Pf6N2E2_1528 0.87 +1.1 1,788,731 - Pf6N2E2_1528 0.87 +0.6 1,788,731 - Pf6N2E2_1528 0.87 -1.5 1,788,731 - Pf6N2E2_1528 0.87 +1.1 1,788,734 + Pf6N2E2_1528 0.87 -0.0 1,788,734 + Pf6N2E2_1528 0.87 +0.3 1,788,734 + Pf6N2E2_1528 0.87 -1.3 1,788,735 - Pf6N2E2_1528 0.87 +1.0 1,788,752 + Pf6N2E2_1528 0.88 -0.7 1,788,753 - Pf6N2E2_1528 0.88 -0.1 1,788,793 - Pf6N2E2_1528 0.89 -0.5 1,788,793 - Pf6N2E2_1528 0.89 -0.5 1,789,523 + Pf6N2E2_1529 0.82 +1.3 1,789,523 + Pf6N2E2_1529 0.82 -0.4 1,789,523 + Pf6N2E2_1529 0.82 -1.0 1,789,523 + Pf6N2E2_1529 0.82 -2.5 1,789,538 + Pf6N2E2_1529 0.85 -1.1 1,789,538 + Pf6N2E2_1529 0.85 -0.7 1,789,538 + Pf6N2E2_1529 0.85 -0.6 1,789,538 + Pf6N2E2_1529 0.85 -0.5 1,789,630 + -0.3 1,789,630 + -0.9 1,789,660 - +0.8 1,789,809 + +0.2 1,789,810 - -0.3 1,789,812 - -2.4 1,789,897 + +0.4 1,790,162 + Pf6N2E2_1530 0.31 +2.2 1,790,194 - Pf6N2E2_1530 0.34 -0.9 1,790,194 - Pf6N2E2_1530 0.34 -1.1 1,790,286 - Pf6N2E2_1530 0.41 -0.3 1,790,286 - Pf6N2E2_1530 0.41 -0.3 1,790,304 + Pf6N2E2_1530 0.43 -1.6 1,790,364 - Pf6N2E2_1530 0.48 +0.7 1,790,364 - Pf6N2E2_1530 0.48 -0.8
Or see this region's nucleotide sequence