Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1016

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1015 and Pf6N2E2_1016 are separated by 48 nucleotidesPf6N2E2_1016 and Pf6N2E2_1017 overlap by 4 nucleotidesPf6N2E2_1017 and Pf6N2E2_1018 are separated by 124 nucleotides Pf6N2E2_1015 - Inositol transport system sugar-binding protein, at 1,184,934 to 1,185,857 _1015 Pf6N2E2_1016 - Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin, at 1,185,906 to 1,187,060 _1016 Pf6N2E2_1017 - small molecule metabolism, at 1,187,057 to 1,187,905 _1017 Pf6N2E2_1018 - putative DNA-binding protein, at 1,188,030 to 1,189,055 _1018 Position (kb) 1185 1186 1187 1188Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1184.956 kb on + strandat 1184.957 kb on - strandat 1184.980 kb on + strandat 1185.260 kb on + strand, within Pf6N2E2_1015at 1185.260 kb on + strand, within Pf6N2E2_1015at 1185.261 kb on - strand, within Pf6N2E2_1015at 1185.343 kb on - strand, within Pf6N2E2_1015at 1185.535 kb on + strand, within Pf6N2E2_1015at 1185.535 kb on + strand, within Pf6N2E2_1015at 1185.535 kb on + strand, within Pf6N2E2_1015at 1185.666 kb on + strand, within Pf6N2E2_1015at 1185.733 kb on + strand, within Pf6N2E2_1015at 1185.734 kb on - strand, within Pf6N2E2_1015at 1185.835 kb on + strandat 1185.901 kb on + strandat 1185.902 kb on - strandat 1185.927 kb on + strandat 1185.958 kb on + strandat 1185.958 kb on + strandat 1186.110 kb on + strand, within Pf6N2E2_1016at 1186.145 kb on - strand, within Pf6N2E2_1016at 1186.336 kb on + strand, within Pf6N2E2_1016at 1186.377 kb on + strand, within Pf6N2E2_1016at 1186.377 kb on + strand, within Pf6N2E2_1016at 1186.378 kb on - strand, within Pf6N2E2_1016at 1186.378 kb on - strand, within Pf6N2E2_1016at 1186.381 kb on + strand, within Pf6N2E2_1016at 1186.381 kb on + strand, within Pf6N2E2_1016at 1186.381 kb on + strand, within Pf6N2E2_1016at 1186.382 kb on - strandat 1186.382 kb on - strand, within Pf6N2E2_1016at 1186.382 kb on - strand, within Pf6N2E2_1016at 1186.466 kb on - strand, within Pf6N2E2_1016at 1186.534 kb on + strand, within Pf6N2E2_1016at 1186.651 kb on + strand, within Pf6N2E2_1016at 1186.651 kb on + strand, within Pf6N2E2_1016at 1186.652 kb on - strand, within Pf6N2E2_1016at 1186.652 kb on - strand, within Pf6N2E2_1016at 1186.654 kb on + strand, within Pf6N2E2_1016at 1186.655 kb on - strand, within Pf6N2E2_1016at 1186.655 kb on - strand, within Pf6N2E2_1016at 1186.927 kb on + strand, within Pf6N2E2_1016at 1186.928 kb on - strand, within Pf6N2E2_1016at 1186.928 kb on - strand, within Pf6N2E2_1016at 1186.928 kb on - strand, within Pf6N2E2_1016at 1187.430 kb on + strand, within Pf6N2E2_1017at 1187.865 kb on + strandat 1187.865 kb on + strandat 1187.885 kb on - strandat 1187.921 kb on + strandat 1187.921 kb on + strandat 1187.921 kb on + strandat 1187.921 kb on + strandat 1187.921 kb on + strandat 1187.921 kb on + strandat 1187.921 kb on + strandat 1187.921 kb on + strandat 1187.922 kb on - strandat 1187.968 kb on + strandat 1187.969 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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1,184,956 + -0.3
1,184,957 - +0.4
1,184,980 + -0.1
1,185,260 + Pf6N2E2_1015 0.35 -0.5
1,185,260 + Pf6N2E2_1015 0.35 +1.5
1,185,261 - Pf6N2E2_1015 0.35 +1.0
1,185,343 - Pf6N2E2_1015 0.44 +0.1
1,185,535 + Pf6N2E2_1015 0.65 -0.9
1,185,535 + Pf6N2E2_1015 0.65 +0.5
1,185,535 + Pf6N2E2_1015 0.65 -0.8
1,185,666 + Pf6N2E2_1015 0.79 -1.0
1,185,733 + Pf6N2E2_1015 0.86 +0.1
1,185,734 - Pf6N2E2_1015 0.87 -1.6
1,185,835 + +1.9
1,185,901 + +1.5
1,185,902 - +0.6
1,185,927 + -0.2
1,185,958 + +0.2
1,185,958 + +4.7
1,186,110 + Pf6N2E2_1016 0.18 -0.3
1,186,145 - Pf6N2E2_1016 0.21 +0.9
1,186,336 + Pf6N2E2_1016 0.37 -0.1
1,186,377 + Pf6N2E2_1016 0.41 +0.1
1,186,377 + Pf6N2E2_1016 0.41 +1.5
1,186,378 - Pf6N2E2_1016 0.41 +1.1
1,186,378 - Pf6N2E2_1016 0.41 -0.0
1,186,381 + Pf6N2E2_1016 0.41 -0.6
1,186,381 + Pf6N2E2_1016 0.41 +0.5
1,186,381 + Pf6N2E2_1016 0.41 +0.2
1,186,382 - -1.6
1,186,382 - Pf6N2E2_1016 0.41 +1.0
1,186,382 - Pf6N2E2_1016 0.41 -0.5
1,186,466 - Pf6N2E2_1016 0.48 +2.0
1,186,534 + Pf6N2E2_1016 0.54 +0.9
1,186,651 + Pf6N2E2_1016 0.65 +0.7
1,186,651 + Pf6N2E2_1016 0.65 +0.2
1,186,652 - Pf6N2E2_1016 0.65 -0.1
1,186,652 - Pf6N2E2_1016 0.65 +0.3
1,186,654 + Pf6N2E2_1016 0.65 +0.4
1,186,655 - Pf6N2E2_1016 0.65 +0.1
1,186,655 - Pf6N2E2_1016 0.65 +1.3
1,186,927 + Pf6N2E2_1016 0.88 +1.5
1,186,928 - Pf6N2E2_1016 0.88 +0.9
1,186,928 - Pf6N2E2_1016 0.88 -0.1
1,186,928 - Pf6N2E2_1016 0.88 +0.6
1,187,430 + Pf6N2E2_1017 0.44 +0.9
1,187,865 + -2.0
1,187,865 + +0.4
1,187,885 - +0.5
1,187,921 + +0.8
1,187,921 + -0.5
1,187,921 + -0.4
1,187,921 + +3.3
1,187,921 + +0.5
1,187,921 + +1.4
1,187,921 + +0.7
1,187,921 + -1.3
1,187,922 - -2.1
1,187,968 + -0.0
1,187,969 - +0.4

Or see this region's nucleotide sequence