Experiment: Parabanic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1712 and Pf6N2E2_1713 are separated by 5 nucleotides Pf6N2E2_1713 and Pf6N2E2_1714 are separated by 3 nucleotides Pf6N2E2_1714 and Pf6N2E2_1715 are separated by 1 nucleotides Pf6N2E2_1715 and Pf6N2E2_1716 are separated by 8 nucleotides
Pf6N2E2_1712 - Permease of the drug/metabolite transporter (DMT) superfamily, at 2,020,844 to 2,021,749
_1712
Pf6N2E2_1713 - iron-sulfur flavoprotein, at 2,021,755 to 2,022,366
_1713
Pf6N2E2_1714 - FIG01218476: hypothetical protein, at 2,022,370 to 2,023,053
_1714
Pf6N2E2_1715 - hypothetical protein, at 2,023,055 to 2,023,600
_1715
Pf6N2E2_1716 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30), at 2,023,609 to 2,024,961
_1716
Position (kb)
2022
2023
2024 Strain fitness (log2 ratio)
-1
0
1
2 at 2021.488 kb on + strand, within Pf6N2E2_1712 at 2021.488 kb on + strand, within Pf6N2E2_1712 at 2021.488 kb on + strand, within Pf6N2E2_1712 at 2021.518 kb on - strand, within Pf6N2E2_1712 at 2022.134 kb on + strand, within Pf6N2E2_1713 at 2022.407 kb on + strand at 2022.520 kb on - strand, within Pf6N2E2_1714 at 2022.638 kb on + strand, within Pf6N2E2_1714 at 2022.662 kb on + strand, within Pf6N2E2_1714 at 2022.912 kb on - strand, within Pf6N2E2_1714 at 2022.912 kb on - strand, within Pf6N2E2_1714 at 2022.917 kb on + strand, within Pf6N2E2_1714 at 2022.942 kb on - strand, within Pf6N2E2_1714 at 2023.102 kb on - strand at 2023.182 kb on + strand, within Pf6N2E2_1715 at 2023.183 kb on - strand, within Pf6N2E2_1715 at 2023.446 kb on + strand, within Pf6N2E2_1715 at 2023.447 kb on - strand, within Pf6N2E2_1715 at 2023.527 kb on + strand, within Pf6N2E2_1715
Per-strain Table
Position Strand Gene LocusTag Fraction Parabanic Acid (N) remove 2,021,488 + Pf6N2E2_1712 0.71 -0.3 2,021,488 + Pf6N2E2_1712 0.71 +0.0 2,021,488 + Pf6N2E2_1712 0.71 +0.4 2,021,518 - Pf6N2E2_1712 0.74 -0.1 2,022,134 + Pf6N2E2_1713 0.62 +0.3 2,022,407 + +1.1 2,022,520 - Pf6N2E2_1714 0.22 +0.2 2,022,638 + Pf6N2E2_1714 0.39 +1.9 2,022,662 + Pf6N2E2_1714 0.43 +1.3 2,022,912 - Pf6N2E2_1714 0.79 -0.1 2,022,912 - Pf6N2E2_1714 0.79 +0.2 2,022,917 + Pf6N2E2_1714 0.80 +2.3 2,022,942 - Pf6N2E2_1714 0.84 +0.3 2,023,102 - -0.0 2,023,182 + Pf6N2E2_1715 0.23 -0.2 2,023,183 - Pf6N2E2_1715 0.23 -0.1 2,023,446 + Pf6N2E2_1715 0.72 +0.1 2,023,447 - Pf6N2E2_1715 0.72 +1.1 2,023,527 + Pf6N2E2_1715 0.86 +0.2
Or see this region's nucleotide sequence