Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5440 and Pf6N2E2_5441 are separated by 791 nucleotides Pf6N2E2_5441 and Pf6N2E2_5442 are separated by 495 nucleotides
Pf6N2E2_5440 - Mobile element protein, at 6,245,999 to 6,247,267
_5440
Pf6N2E2_5441 - FIG00955104: hypothetical protein, at 6,248,059 to 6,248,289
_5441
Pf6N2E2_5442 - Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2), at 6,248,785 to 6,251,199
_5442
Position (kb)
6248
6249 Strain fitness (log2 ratio)
-2
-1
0
1 at 6247.400 kb on - strand at 6247.400 kb on - strand at 6247.400 kb on - strand at 6247.536 kb on - strand at 6247.546 kb on + strand at 6247.547 kb on - strand at 6247.547 kb on - strand at 6247.547 kb on - strand at 6247.568 kb on + strand at 6247.568 kb on + strand at 6247.568 kb on + strand at 6247.568 kb on + strand at 6247.577 kb on + strand at 6247.577 kb on + strand at 6247.577 kb on + strand at 6247.577 kb on + strand at 6247.577 kb on + strand at 6247.577 kb on + strand at 6247.578 kb on - strand at 6247.578 kb on - strand at 6247.578 kb on - strand at 6247.578 kb on - strand at 6247.589 kb on + strand at 6247.589 kb on + strand at 6247.590 kb on - strand at 6247.590 kb on - strand at 6247.626 kb on + strand at 6247.626 kb on + strand at 6247.627 kb on - strand at 6247.627 kb on - strand at 6247.652 kb on + strand at 6247.653 kb on - strand at 6247.661 kb on + strand at 6247.661 kb on + strand at 6247.661 kb on + strand at 6247.662 kb on - strand at 6247.662 kb on - strand at 6247.662 kb on - strand at 6247.662 kb on - strand at 6247.662 kb on - strand at 6247.687 kb on + strand at 6247.688 kb on - strand at 6247.688 kb on - strand at 6247.688 kb on - strand at 6247.748 kb on + strand at 6247.748 kb on + strand at 6247.749 kb on - strand at 6247.749 kb on - strand at 6247.749 kb on - strand at 6247.962 kb on - strand at 6247.962 kb on - strand at 6247.962 kb on - strand at 6247.962 kb on - strand at 6247.962 kb on - strand at 6248.093 kb on + strand, within Pf6N2E2_5441 at 6248.093 kb on + strand, within Pf6N2E2_5441 at 6248.094 kb on - strand, within Pf6N2E2_5441 at 6248.216 kb on + strand, within Pf6N2E2_5441 at 6248.216 kb on + strand, within Pf6N2E2_5441 at 6248.216 kb on + strand, within Pf6N2E2_5441 at 6248.216 kb on + strand, within Pf6N2E2_5441 at 6248.216 kb on + strand, within Pf6N2E2_5441 at 6248.216 kb on + strand, within Pf6N2E2_5441 at 6248.217 kb on - strand, within Pf6N2E2_5441 at 6248.217 kb on - strand, within Pf6N2E2_5441 at 6248.217 kb on - strand, within Pf6N2E2_5441 at 6248.217 kb on - strand, within Pf6N2E2_5441 at 6248.313 kb on + strand at 6248.356 kb on + strand at 6248.356 kb on + strand at 6248.356 kb on + strand at 6248.357 kb on - strand at 6248.357 kb on - strand at 6248.357 kb on - strand at 6248.436 kb on - strand at 6248.436 kb on - strand at 6248.492 kb on + strand at 6248.734 kb on + strand at 6248.734 kb on + strand at 6248.734 kb on + strand at 6248.734 kb on + strand at 6248.735 kb on - strand at 6248.735 kb on - strand at 6248.735 kb on - strand at 6248.743 kb on + strand at 6248.743 kb on + strand at 6248.743 kb on + strand at 6248.743 kb on + strand at 6248.743 kb on + strand at 6248.743 kb on + strand at 6248.744 kb on - strand at 6248.744 kb on - strand at 6248.744 kb on - strand at 6248.744 kb on - strand at 6248.762 kb on - strand at 6248.784 kb on + strand at 6248.785 kb on - strand at 6248.785 kb on - strand at 6248.785 kb on - strand at 6248.785 kb on - strand at 6248.785 kb on - strand at 6248.849 kb on + strand at 6248.849 kb on + strand at 6248.849 kb on + strand at 6248.849 kb on + strand at 6248.849 kb on + strand at 6248.850 kb on - strand at 6248.850 kb on - strand at 6248.850 kb on - strand at 6248.850 kb on - strand at 6248.850 kb on - strand at 6248.850 kb on - strand at 6248.914 kb on + strand at 6248.914 kb on + strand at 6248.914 kb on + strand at 6248.914 kb on + strand at 6248.915 kb on - strand at 6248.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 6,247,400 - +0.1 6,247,400 - -0.2 6,247,400 - +1.1 6,247,536 - -0.3 6,247,546 + -0.3 6,247,547 - -0.6 6,247,547 - +0.7 6,247,547 - -1.2 6,247,568 + -0.0 6,247,568 + +0.6 6,247,568 + +0.6 6,247,568 + +0.6 6,247,577 + +0.4 6,247,577 + +0.8 6,247,577 + -0.4 6,247,577 + -2.2 6,247,577 + +1.3 6,247,577 + +0.3 6,247,578 - -1.0 6,247,578 - -0.8 6,247,578 - +0.4 6,247,578 - +0.3 6,247,589 + +1.5 6,247,589 + -2.7 6,247,590 - -1.6 6,247,590 - +1.7 6,247,626 + -1.6 6,247,626 + +0.7 6,247,627 - -0.5 6,247,627 - -0.3 6,247,652 + +1.1 6,247,653 - +0.6 6,247,661 + +0.4 6,247,661 + +0.3 6,247,661 + -0.7 6,247,662 - +0.0 6,247,662 - +1.7 6,247,662 - -0.2 6,247,662 - -1.2 6,247,662 - -0.5 6,247,687 + +0.6 6,247,688 - +0.4 6,247,688 - +0.1 6,247,688 - +0.2 6,247,748 + -1.3 6,247,748 + +1.4 6,247,749 - -0.7 6,247,749 - -1.8 6,247,749 - -0.1 6,247,962 - +0.6 6,247,962 - +0.1 6,247,962 - -0.2 6,247,962 - -2.3 6,247,962 - -1.1 6,248,093 + Pf6N2E2_5441 0.15 +0.5 6,248,093 + Pf6N2E2_5441 0.15 +0.3 6,248,094 - Pf6N2E2_5441 0.15 +0.4 6,248,216 + Pf6N2E2_5441 0.68 -0.7 6,248,216 + Pf6N2E2_5441 0.68 -1.1 6,248,216 + Pf6N2E2_5441 0.68 -1.3 6,248,216 + Pf6N2E2_5441 0.68 -0.9 6,248,216 + Pf6N2E2_5441 0.68 -0.7 6,248,216 + Pf6N2E2_5441 0.68 +0.7 6,248,217 - Pf6N2E2_5441 0.68 -0.2 6,248,217 - Pf6N2E2_5441 0.68 -1.2 6,248,217 - Pf6N2E2_5441 0.68 -0.4 6,248,217 - Pf6N2E2_5441 0.68 -0.7 6,248,313 + -0.3 6,248,356 + +0.9 6,248,356 + -0.3 6,248,356 + -0.7 6,248,357 - -0.8 6,248,357 - -0.9 6,248,357 - -1.2 6,248,436 - +1.1 6,248,436 - -0.3 6,248,492 + +1.0 6,248,734 + -0.2 6,248,734 + +1.1 6,248,734 + -0.4 6,248,734 + +0.3 6,248,735 - +0.6 6,248,735 - +0.5 6,248,735 - -0.8 6,248,743 + +0.2 6,248,743 + +0.1 6,248,743 + -0.8 6,248,743 + -1.3 6,248,743 + +0.4 6,248,743 + +0.8 6,248,744 - -0.4 6,248,744 - -0.0 6,248,744 - -0.5 6,248,744 - -0.9 6,248,762 - +1.1 6,248,784 + +1.1 6,248,785 - +0.7 6,248,785 - -0.9 6,248,785 - -0.8 6,248,785 - +0.7 6,248,785 - -0.9 6,248,849 + -0.7 6,248,849 + +0.1 6,248,849 + +0.2 6,248,849 + -0.2 6,248,849 + +0.5 6,248,850 - +1.7 6,248,850 - -0.4 6,248,850 - +1.7 6,248,850 - -2.6 6,248,850 - -1.3 6,248,850 - +0.2 6,248,914 + -0.6 6,248,914 + +0.8 6,248,914 + -0.6 6,248,914 + +1.4 6,248,915 - -0.3 6,248,915 - +0.4
Or see this region's nucleotide sequence