Experiment: L-Citrulline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4202 and Pf6N2E2_4203 are separated by 565 nucleotides Pf6N2E2_4203 and Pf6N2E2_4204 are separated by 5 nucleotides Pf6N2E2_4204 and Pf6N2E2_4205 are separated by 18 nucleotides
Pf6N2E2_4202 - GTPase and tRNA-U34 5-formylation enzyme TrmE, at 4,892,092 to 4,893,462
_4202
Pf6N2E2_4203 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 4,894,028 to 4,895,926
_4203
Pf6N2E2_4204 - rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB, at 4,895,932 to 4,896,567
_4204
Pf6N2E2_4205 - Chromosome (plasmid) partitioning protein ParA, at 4,896,586 to 4,897,383
_4205
Position (kb)
4894
4895
4896 Strain fitness (log2 ratio)
-2
-1
0
1 at 4893.460 kb on + strand at 4893.623 kb on + strand at 4893.710 kb on + strand at 4893.710 kb on + strand at 4893.710 kb on + strand at 4893.711 kb on - strand at 4893.711 kb on - strand at 4893.711 kb on - strand at 4893.767 kb on - strand at 4893.767 kb on - strand at 4893.832 kb on - strand at 4893.941 kb on + strand at 4893.941 kb on + strand at 4893.941 kb on + strand at 4893.941 kb on + strand at 4894.007 kb on + strand at 4894.007 kb on + strand at 4894.007 kb on + strand at 4896.059 kb on - strand, within Pf6N2E2_4204 at 4896.059 kb on - strand, within Pf6N2E2_4204 at 4896.304 kb on - strand, within Pf6N2E2_4204 at 4896.549 kb on - strand at 4896.592 kb on - strand at 4896.597 kb on - strand at 4896.597 kb on - strand at 4896.646 kb on - strand at 4896.766 kb on + strand, within Pf6N2E2_4205 at 4896.767 kb on - strand, within Pf6N2E2_4205
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (N) remove 4,893,460 + -0.5 4,893,623 + +0.1 4,893,710 + -2.2 4,893,710 + -0.1 4,893,710 + +0.7 4,893,711 - +0.8 4,893,711 - +0.6 4,893,711 - +0.4 4,893,767 - -0.9 4,893,767 - -0.9 4,893,832 - -2.0 4,893,941 + -0.5 4,893,941 + +0.2 4,893,941 + +1.2 4,893,941 + +1.4 4,894,007 + +1.0 4,894,007 + +0.6 4,894,007 + -0.5 4,896,059 - Pf6N2E2_4204 0.20 -0.3 4,896,059 - Pf6N2E2_4204 0.20 +0.7 4,896,304 - Pf6N2E2_4204 0.58 -2.1 4,896,549 - -0.5 4,896,592 - -0.3 4,896,597 - -1.8 4,896,597 - +0.1 4,896,646 - +0.3 4,896,766 + Pf6N2E2_4205 0.23 -0.9 4,896,767 - Pf6N2E2_4205 0.23 -0.7
Or see this region's nucleotide sequence