Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4202

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4201 and Pf6N2E2_4202 are separated by 79 nucleotidesPf6N2E2_4202 and Pf6N2E2_4203 are separated by 565 nucleotides Pf6N2E2_4201 - Inner membrane protein translocase component YidC, long form, at 4,890,330 to 4,892,012 _4201 Pf6N2E2_4202 - GTPase and tRNA-U34 5-formylation enzyme TrmE, at 4,892,092 to 4,893,462 _4202 Pf6N2E2_4203 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 4,894,028 to 4,895,926 _4203 Position (kb) 4892 4893 4894Strain fitness (log2 ratio) -2 -1 0 1at 4891.976 kb on + strandat 4892.046 kb on + strandat 4892.091 kb on + strandat 4892.091 kb on + strandat 4893.460 kb on + strandat 4893.623 kb on + strandat 4893.710 kb on + strandat 4893.710 kb on + strandat 4893.710 kb on + strandat 4893.711 kb on - strandat 4893.711 kb on - strandat 4893.711 kb on - strandat 4893.767 kb on - strandat 4893.767 kb on - strandat 4893.832 kb on - strandat 4893.941 kb on + strandat 4893.941 kb on + strandat 4893.941 kb on + strandat 4893.941 kb on + strandat 4894.007 kb on + strandat 4894.007 kb on + strandat 4894.007 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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4,891,976 + -1.2
4,892,046 + +0.6
4,892,091 + -0.9
4,892,091 + +0.6
4,893,460 + -0.5
4,893,623 + +0.1
4,893,710 + -2.2
4,893,710 + -0.1
4,893,710 + +0.7
4,893,711 - +0.8
4,893,711 - +0.6
4,893,711 - +0.4
4,893,767 - -0.9
4,893,767 - -0.9
4,893,832 - -2.0
4,893,941 + -0.5
4,893,941 + +0.2
4,893,941 + +1.2
4,893,941 + +1.4
4,894,007 + +1.0
4,894,007 + +0.6
4,894,007 + -0.5

Or see this region's nucleotide sequence