Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4132

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4131 and Pf6N2E2_4132 are separated by 195 nucleotidesPf6N2E2_4132 and Pf6N2E2_4133 are separated by 15 nucleotides Pf6N2E2_4131 - Sulfate permease, at 4,809,452 to 4,811,020 _4131 Pf6N2E2_4132 - L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1), at 4,811,216 to 4,812,136 _4132 Pf6N2E2_4133 - Choline-sulfatase (EC 3.1.6.6), at 4,812,152 to 4,813,684 _4133 Position (kb) 4811 4812 4813Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4810.472 kb on - strand, within Pf6N2E2_4131at 4810.713 kb on + strand, within Pf6N2E2_4131at 4810.713 kb on + strand, within Pf6N2E2_4131at 4810.713 kb on + strand, within Pf6N2E2_4131at 4810.713 kb on + strand, within Pf6N2E2_4131at 4810.713 kb on + strand, within Pf6N2E2_4131at 4810.713 kb on + strand, within Pf6N2E2_4131at 4810.713 kb on + strand, within Pf6N2E2_4131at 4810.713 kb on + strand, within Pf6N2E2_4131at 4810.713 kb on + strand, within Pf6N2E2_4131at 4810.713 kb on + strand, within Pf6N2E2_4131at 4810.713 kb on + strand, within Pf6N2E2_4131at 4810.713 kb on + strand, within Pf6N2E2_4131at 4810.714 kb on - strand, within Pf6N2E2_4131at 4810.714 kb on - strand, within Pf6N2E2_4131at 4810.714 kb on - strand, within Pf6N2E2_4131at 4810.714 kb on - strand, within Pf6N2E2_4131at 4810.714 kb on - strand, within Pf6N2E2_4131at 4810.714 kb on - strand, within Pf6N2E2_4131at 4810.714 kb on - strand, within Pf6N2E2_4131at 4810.714 kb on - strand, within Pf6N2E2_4131at 4810.714 kb on - strand, within Pf6N2E2_4131at 4810.714 kb on - strand, within Pf6N2E2_4131at 4810.755 kb on + strand, within Pf6N2E2_4131at 4810.755 kb on + strand, within Pf6N2E2_4131at 4810.756 kb on - strand, within Pf6N2E2_4131at 4810.756 kb on - strand, within Pf6N2E2_4131at 4810.848 kb on + strand, within Pf6N2E2_4131at 4810.848 kb on + strand, within Pf6N2E2_4131at 4810.848 kb on + strand, within Pf6N2E2_4131at 4810.849 kb on - strand, within Pf6N2E2_4131at 4810.849 kb on - strand, within Pf6N2E2_4131at 4810.849 kb on - strand, within Pf6N2E2_4131at 4810.849 kb on - strand, within Pf6N2E2_4131at 4810.887 kb on + strandat 4811.052 kb on + strandat 4811.052 kb on + strandat 4811.052 kb on + strandat 4811.052 kb on + strandat 4811.053 kb on - strandat 4811.053 kb on - strandat 4811.053 kb on - strandat 4811.138 kb on + strandat 4811.217 kb on + strandat 4811.217 kb on + strandat 4811.218 kb on - strandat 4811.440 kb on - strand, within Pf6N2E2_4132at 4811.458 kb on + strand, within Pf6N2E2_4132at 4811.460 kb on + strand, within Pf6N2E2_4132at 4811.460 kb on + strand, within Pf6N2E2_4132at 4811.460 kb on + strand, within Pf6N2E2_4132at 4811.460 kb on + strand, within Pf6N2E2_4132at 4811.461 kb on - strand, within Pf6N2E2_4132at 4811.461 kb on - strand, within Pf6N2E2_4132at 4811.461 kb on - strand, within Pf6N2E2_4132at 4811.484 kb on + strand, within Pf6N2E2_4132at 4811.484 kb on + strand, within Pf6N2E2_4132at 4811.485 kb on - strand, within Pf6N2E2_4132at 4811.505 kb on + strand, within Pf6N2E2_4132at 4811.505 kb on + strand, within Pf6N2E2_4132at 4811.506 kb on - strand, within Pf6N2E2_4132at 4811.506 kb on - strand, within Pf6N2E2_4132at 4811.506 kb on - strand, within Pf6N2E2_4132at 4811.709 kb on + strand, within Pf6N2E2_4132at 4811.709 kb on + strand, within Pf6N2E2_4132at 4811.709 kb on + strand, within Pf6N2E2_4132at 4811.709 kb on + strand, within Pf6N2E2_4132at 4811.710 kb on - strand, within Pf6N2E2_4132at 4811.710 kb on - strand, within Pf6N2E2_4132at 4811.758 kb on + strand, within Pf6N2E2_4132at 4811.758 kb on + strand, within Pf6N2E2_4132at 4811.759 kb on - strand, within Pf6N2E2_4132at 4811.781 kb on + strand, within Pf6N2E2_4132at 4811.781 kb on + strand, within Pf6N2E2_4132at 4811.781 kb on + strand, within Pf6N2E2_4132at 4811.781 kb on + strand, within Pf6N2E2_4132at 4811.781 kb on + strand, within Pf6N2E2_4132at 4811.781 kb on + strand, within Pf6N2E2_4132at 4811.782 kb on - strand, within Pf6N2E2_4132at 4811.782 kb on - strand, within Pf6N2E2_4132at 4811.782 kb on - strand, within Pf6N2E2_4132at 4811.865 kb on + strand, within Pf6N2E2_4132at 4811.973 kb on + strand, within Pf6N2E2_4132at 4811.974 kb on - strand, within Pf6N2E2_4132at 4811.974 kb on - strand, within Pf6N2E2_4132at 4812.116 kb on + strandat 4812.116 kb on + strandat 4812.117 kb on - strandat 4812.148 kb on + strandat 4812.148 kb on + strandat 4812.148 kb on + strandat 4812.148 kb on + strandat 4812.149 kb on - strandat 4812.149 kb on - strandat 4812.149 kb on - strandat 4812.149 kb on - strandat 4812.149 kb on - strandat 4812.149 kb on - strandat 4812.217 kb on + strandat 4812.218 kb on - strandat 4812.225 kb on + strandat 4812.225 kb on + strandat 4812.225 kb on + strandat 4812.225 kb on + strandat 4812.225 kb on + strandat 4812.225 kb on + strandat 4812.225 kb on + strandat 4812.226 kb on - strandat 4812.226 kb on - strandat 4812.226 kb on - strandat 4812.226 kb on - strandat 4812.226 kb on - strandat 4812.226 kb on - strandat 4812.226 kb on - strandat 4812.226 kb on - strandat 4812.226 kb on - strandat 4812.226 kb on - strandat 4812.480 kb on + strand, within Pf6N2E2_4133at 4812.480 kb on + strand, within Pf6N2E2_4133at 4812.480 kb on + strand, within Pf6N2E2_4133at 4812.481 kb on - strand, within Pf6N2E2_4133at 4812.481 kb on - strand, within Pf6N2E2_4133at 4812.481 kb on - strand, within Pf6N2E2_4133at 4812.543 kb on + strand, within Pf6N2E2_4133at 4812.543 kb on + strand, within Pf6N2E2_4133at 4812.543 kb on + strand, within Pf6N2E2_4133at 4812.543 kb on + strand, within Pf6N2E2_4133at 4812.543 kb on + strand, within Pf6N2E2_4133at 4812.543 kb on + strand, within Pf6N2E2_4133at 4812.543 kb on + strand, within Pf6N2E2_4133at 4812.543 kb on + strand, within Pf6N2E2_4133at 4812.544 kb on - strand, within Pf6N2E2_4133at 4812.544 kb on - strand, within Pf6N2E2_4133at 4812.544 kb on - strand, within Pf6N2E2_4133at 4812.544 kb on - strand, within Pf6N2E2_4133at 4812.544 kb on - strand, within Pf6N2E2_4133at 4812.544 kb on - strand, within Pf6N2E2_4133at 4812.544 kb on - strand, within Pf6N2E2_4133at 4812.544 kb on - strand, within Pf6N2E2_4133at 4812.544 kb on - strand, within Pf6N2E2_4133at 4812.544 kb on - strand, within Pf6N2E2_4133at 4812.544 kb on - strand, within Pf6N2E2_4133at 4812.544 kb on - strand, within Pf6N2E2_4133at 4812.768 kb on + strand, within Pf6N2E2_4133at 4812.836 kb on + strand, within Pf6N2E2_4133at 4812.837 kb on - strand, within Pf6N2E2_4133at 4812.888 kb on + strand, within Pf6N2E2_4133at 4812.888 kb on + strand, within Pf6N2E2_4133at 4812.888 kb on + strand, within Pf6N2E2_4133at 4812.888 kb on + strand, within Pf6N2E2_4133at 4812.888 kb on + strand, within Pf6N2E2_4133at 4812.889 kb on - strand, within Pf6N2E2_4133at 4812.889 kb on - strand, within Pf6N2E2_4133at 4812.889 kb on - strand, within Pf6N2E2_4133at 4812.889 kb on - strand, within Pf6N2E2_4133at 4812.889 kb on - strand, within Pf6N2E2_4133at 4812.889 kb on - strand, within Pf6N2E2_4133at 4812.889 kb on - strand, within Pf6N2E2_4133at 4812.931 kb on + strand, within Pf6N2E2_4133at 4812.932 kb on - strand, within Pf6N2E2_4133at 4812.963 kb on + strand, within Pf6N2E2_4133at 4812.963 kb on + strand, within Pf6N2E2_4133at 4812.963 kb on + strand, within Pf6N2E2_4133at 4812.963 kb on + strand, within Pf6N2E2_4133at 4812.963 kb on + strand, within Pf6N2E2_4133at 4812.963 kb on + strand, within Pf6N2E2_4133at 4812.963 kb on + strand, within Pf6N2E2_4133at 4812.963 kb on + strand, within Pf6N2E2_4133at 4812.964 kb on - strand, within Pf6N2E2_4133at 4812.964 kb on - strand, within Pf6N2E2_4133at 4813.044 kb on + strand, within Pf6N2E2_4133at 4813.044 kb on + strand, within Pf6N2E2_4133at 4813.045 kb on - strand, within Pf6N2E2_4133at 4813.045 kb on - strand, within Pf6N2E2_4133

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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4,810,472 - Pf6N2E2_4131 0.65 +0.6
4,810,713 + Pf6N2E2_4131 0.80 +0.1
4,810,713 + Pf6N2E2_4131 0.80 +0.1
4,810,713 + Pf6N2E2_4131 0.80 +0.4
4,810,713 + Pf6N2E2_4131 0.80 -0.9
4,810,713 + Pf6N2E2_4131 0.80 -0.1
4,810,713 + Pf6N2E2_4131 0.80 -0.9
4,810,713 + Pf6N2E2_4131 0.80 +0.4
4,810,713 + Pf6N2E2_4131 0.80 -0.8
4,810,713 + Pf6N2E2_4131 0.80 -0.1
4,810,713 + Pf6N2E2_4131 0.80 -0.1
4,810,713 + Pf6N2E2_4131 0.80 -0.4
4,810,713 + Pf6N2E2_4131 0.80 +0.0
4,810,714 - Pf6N2E2_4131 0.80 -0.1
4,810,714 - Pf6N2E2_4131 0.80 +0.3
4,810,714 - Pf6N2E2_4131 0.80 -0.1
4,810,714 - Pf6N2E2_4131 0.80 -1.0
4,810,714 - Pf6N2E2_4131 0.80 +0.1
4,810,714 - Pf6N2E2_4131 0.80 -1.4
4,810,714 - Pf6N2E2_4131 0.80 +0.9
4,810,714 - Pf6N2E2_4131 0.80 +0.8
4,810,714 - Pf6N2E2_4131 0.80 -0.0
4,810,714 - Pf6N2E2_4131 0.80 -0.1
4,810,755 + Pf6N2E2_4131 0.83 +1.2
4,810,755 + Pf6N2E2_4131 0.83 -0.9
4,810,756 - Pf6N2E2_4131 0.83 -0.9
4,810,756 - Pf6N2E2_4131 0.83 +0.5
4,810,848 + Pf6N2E2_4131 0.89 +0.2
4,810,848 + Pf6N2E2_4131 0.89 +0.4
4,810,848 + Pf6N2E2_4131 0.89 -0.2
4,810,849 - Pf6N2E2_4131 0.89 +0.2
4,810,849 - Pf6N2E2_4131 0.89 +0.1
4,810,849 - Pf6N2E2_4131 0.89 +0.0
4,810,849 - Pf6N2E2_4131 0.89 -0.7
4,810,887 + +0.4
4,811,052 + -0.1
4,811,052 + +0.2
4,811,052 + -0.2
4,811,052 + +0.4
4,811,053 - +0.1
4,811,053 - -0.2
4,811,053 - -0.1
4,811,138 + +1.2
4,811,217 + +1.2
4,811,217 + +1.4
4,811,218 - +0.0
4,811,440 - Pf6N2E2_4132 0.24 +0.2
4,811,458 + Pf6N2E2_4132 0.26 -0.4
4,811,460 + Pf6N2E2_4132 0.26 -1.6
4,811,460 + Pf6N2E2_4132 0.26 -0.5
4,811,460 + Pf6N2E2_4132 0.26 -0.4
4,811,460 + Pf6N2E2_4132 0.26 -0.8
4,811,461 - Pf6N2E2_4132 0.27 +0.3
4,811,461 - Pf6N2E2_4132 0.27 +2.1
4,811,461 - Pf6N2E2_4132 0.27 +0.3
4,811,484 + Pf6N2E2_4132 0.29 +0.7
4,811,484 + Pf6N2E2_4132 0.29 -0.9
4,811,485 - Pf6N2E2_4132 0.29 -0.2
4,811,505 + Pf6N2E2_4132 0.31 -0.3
4,811,505 + Pf6N2E2_4132 0.31 +1.0
4,811,506 - Pf6N2E2_4132 0.31 +0.4
4,811,506 - Pf6N2E2_4132 0.31 -0.8
4,811,506 - Pf6N2E2_4132 0.31 +0.1
4,811,709 + Pf6N2E2_4132 0.54 -0.4
4,811,709 + Pf6N2E2_4132 0.54 -0.4
4,811,709 + Pf6N2E2_4132 0.54 +0.5
4,811,709 + Pf6N2E2_4132 0.54 +0.3
4,811,710 - Pf6N2E2_4132 0.54 +0.4
4,811,710 - Pf6N2E2_4132 0.54 -1.0
4,811,758 + Pf6N2E2_4132 0.59 -0.9
4,811,758 + Pf6N2E2_4132 0.59 +0.2
4,811,759 - Pf6N2E2_4132 0.59 -0.4
4,811,781 + Pf6N2E2_4132 0.61 -0.8
4,811,781 + Pf6N2E2_4132 0.61 -0.4
4,811,781 + Pf6N2E2_4132 0.61 +0.3
4,811,781 + Pf6N2E2_4132 0.61 -0.7
4,811,781 + Pf6N2E2_4132 0.61 -0.5
4,811,781 + Pf6N2E2_4132 0.61 -0.1
4,811,782 - Pf6N2E2_4132 0.61 -0.7
4,811,782 - Pf6N2E2_4132 0.61 +1.3
4,811,782 - Pf6N2E2_4132 0.61 -0.1
4,811,865 + Pf6N2E2_4132 0.70 +0.1
4,811,973 + Pf6N2E2_4132 0.82 -0.2
4,811,974 - Pf6N2E2_4132 0.82 -0.1
4,811,974 - Pf6N2E2_4132 0.82 -0.3
4,812,116 + +0.3
4,812,116 + -0.3
4,812,117 - +0.1
4,812,148 + -0.3
4,812,148 + +0.8
4,812,148 + +0.4
4,812,148 + -0.3
4,812,149 - -0.9
4,812,149 - -0.6
4,812,149 - -2.5
4,812,149 - -0.2
4,812,149 - -0.8
4,812,149 - -0.1
4,812,217 + +0.8
4,812,218 - -0.1
4,812,225 + +0.5
4,812,225 + +1.2
4,812,225 + +0.4
4,812,225 + +0.3
4,812,225 + +0.5
4,812,225 + -1.1
4,812,225 + -0.5
4,812,226 - +1.3
4,812,226 - -0.1
4,812,226 - -0.2
4,812,226 - -0.5
4,812,226 - +0.4
4,812,226 - +0.3
4,812,226 - -0.3
4,812,226 - -0.5
4,812,226 - +0.3
4,812,226 - +1.2
4,812,480 + Pf6N2E2_4133 0.21 -1.9
4,812,480 + Pf6N2E2_4133 0.21 -2.1
4,812,480 + Pf6N2E2_4133 0.21 -0.3
4,812,481 - Pf6N2E2_4133 0.21 +0.2
4,812,481 - Pf6N2E2_4133 0.21 +0.2
4,812,481 - Pf6N2E2_4133 0.21 -0.8
4,812,543 + Pf6N2E2_4133 0.26 +0.6
4,812,543 + Pf6N2E2_4133 0.26 -0.3
4,812,543 + Pf6N2E2_4133 0.26 -1.2
4,812,543 + Pf6N2E2_4133 0.26 +0.1
4,812,543 + Pf6N2E2_4133 0.26 -0.0
4,812,543 + Pf6N2E2_4133 0.26 -0.1
4,812,543 + Pf6N2E2_4133 0.26 -0.8
4,812,543 + Pf6N2E2_4133 0.26 +0.5
4,812,544 - Pf6N2E2_4133 0.26 -0.0
4,812,544 - Pf6N2E2_4133 0.26 -0.4
4,812,544 - Pf6N2E2_4133 0.26 +1.3
4,812,544 - Pf6N2E2_4133 0.26 -0.7
4,812,544 - Pf6N2E2_4133 0.26 -1.0
4,812,544 - Pf6N2E2_4133 0.26 +1.0
4,812,544 - Pf6N2E2_4133 0.26 +0.5
4,812,544 - Pf6N2E2_4133 0.26 +0.0
4,812,544 - Pf6N2E2_4133 0.26 -3.6
4,812,544 - Pf6N2E2_4133 0.26 +0.5
4,812,544 - Pf6N2E2_4133 0.26 -0.9
4,812,544 - Pf6N2E2_4133 0.26 -0.8
4,812,768 + Pf6N2E2_4133 0.40 +0.4
4,812,836 + Pf6N2E2_4133 0.45 -1.6
4,812,837 - Pf6N2E2_4133 0.45 +1.0
4,812,888 + Pf6N2E2_4133 0.48 +0.4
4,812,888 + Pf6N2E2_4133 0.48 -0.9
4,812,888 + Pf6N2E2_4133 0.48 +0.1
4,812,888 + Pf6N2E2_4133 0.48 +0.3
4,812,888 + Pf6N2E2_4133 0.48 +1.4
4,812,889 - Pf6N2E2_4133 0.48 -0.3
4,812,889 - Pf6N2E2_4133 0.48 +0.5
4,812,889 - Pf6N2E2_4133 0.48 +0.7
4,812,889 - Pf6N2E2_4133 0.48 +0.2
4,812,889 - Pf6N2E2_4133 0.48 +0.1
4,812,889 - Pf6N2E2_4133 0.48 +0.6
4,812,889 - Pf6N2E2_4133 0.48 -0.6
4,812,931 + Pf6N2E2_4133 0.51 +0.8
4,812,932 - Pf6N2E2_4133 0.51 +0.1
4,812,963 + Pf6N2E2_4133 0.53 -0.8
4,812,963 + Pf6N2E2_4133 0.53 -0.3
4,812,963 + Pf6N2E2_4133 0.53 -1.8
4,812,963 + Pf6N2E2_4133 0.53 -0.7
4,812,963 + Pf6N2E2_4133 0.53 +0.4
4,812,963 + Pf6N2E2_4133 0.53 +0.1
4,812,963 + Pf6N2E2_4133 0.53 -0.1
4,812,963 + Pf6N2E2_4133 0.53 +0.1
4,812,964 - Pf6N2E2_4133 0.53 -0.1
4,812,964 - Pf6N2E2_4133 0.53 +0.7
4,813,044 + Pf6N2E2_4133 0.58 +0.3
4,813,044 + Pf6N2E2_4133 0.58 +0.6
4,813,045 - Pf6N2E2_4133 0.58 +0.5
4,813,045 - Pf6N2E2_4133 0.58 +0.5

Or see this region's nucleotide sequence